Benjamin Bajželj

1. BAJŽELJ, Benjamin. Vpliv 2,2,2-trifluoroetanola (TFE) in temperature na zvitje intrinzično neurejenih peptidov iz bakterijskih sistemov toksin-antitoksin : magistrsko delo : univerzitetni študijski program 2. stopnje Biokemija. Ljubljana: [B. Bajželj], 2017. 47 str., ilustr. [COBISS.SI-ID 1537611971]

2. BAJŽELJ, Benjamin, DRGAN, Viktor. Analysis of counter-propagation neural network models for prediction of neurotoxicity. V: NOVIČ, Marjana (ur.), VRAČKO, Marjan (ur.). Book of abstracts. 18th International Conference on QSAR in Environmental and Health Sciences, 11-15th June 2018, Bled, Slovenia. Ljubljana: National Institute of Chemistry, 2018. Str. 118. ISBN 978-961-6104-38-8. [COBISS.SI-ID 39576581]

3. DRGAN, Viktor, BAJŽELJ, Benjamin. Grouping of compounds from a neurotoxicity dataset based on gene expression data. V: NOVIČ, Marjana (ur.), VRAČKO, Marjan (ur.). Book of abstracts. 18th International Conference on QSAR in Environmental and Health Sciences, 11-15th June 2018, Bled, Slovenia. Ljubljana: National Institute of Chemistry, 2018. Str. 117. ISBN 978-961-6104-38-8. [COBISS.SI-ID 39576325]

4. DRGAN, Viktor, BAJŽELJ, Benjamin. Modelling liver toxicity of drugs using artificial neural networks. V: 10th International Symposium on Computational Methods in Toxicology and Pharmacology Integrating Internet Resources, Ioannina, 23-27 June, 2019 : book of abstracts. [S. l.]: [s. n.], 2019. Str. 62. [COBISS.SI-ID 6680346]

5. BAJŽELJ, Benjamin, DRGAN, Viktor. Hepatotoxicity modeling using counter-propagation artificial neural networks : handling an imbalanced classification problem. Molecules. Feb. 2020, vol. 25, iss. 3, str. 481-1-481-17, ilustr. ISSN 1420-3049. https://www.mdpi.com/1420-3049/25/3/481, DOI: 10.3390/molecules25030481. [COBISS.SI-ID 6781466]

6. VENKO, Katja, BAJŽELJ, Benjamin. In silico models for hepatotoxicity prediction. V: PINTAR, Albin (ur.), et al. Zbornik povzetkov = Book of abstracts : Slovenski kemijski dnevi 2020 = 26th Annual Meeting of the Slovenian Chemical Society : 16.-18. september 2020, Portorož, Portorose, Slovenija. Ljubljana: Slovensko kemijsko društvo, 2020. Str. 107. ISBN 978-961-93849-7-8. [COBISS.SI-ID 30989571]

7. DRGAN, Viktor, BAJŽELJ, Benjamin. Application of supervised SOM algorithms in predicting the hepatotoxic potential of drugs. International journal of molecular sciences. 24 Apr. 2021, vol. 22, iss. 9, [article no.] 4443, str. 1-15. ISSN 1422-0067. https://www.mdpi.com/1422-0067/22/9/4443, DOI: 10.3390/ijms22094443. [COBISS.SI-ID 62501635]

8. BAJŽELJ, Benjamin, DRGAN, Viktor. QSAR and network analysis approaches for predicting druginduced liver injury. V: PINTAR, Albin (ur.), et al. Zbornik povzetkov = Book of abstracts : Slovenski kemijski dnevi 2021 = 27th Annual Meeting of the Slovenian Chemical Society : 22.-24. september 2021, Portorož, Portorose, Slovenija. Ljubljana: Slovensko kemijsko društvo, 2021. Str. 131. ISBN 978-961-93849-9-2. [COBISS.SI-ID 80862211]

9. DRGAN, Viktor, BAJŽELJ, Benjamin. Supervised SOMs in evaluating drug potential for liver injury. V: 19th International Workshop on (Quantitative) Structure-Activity Relationships in Environmental and Health Sciences : June 7th - June 9th, 2021 : workshop program. [S. l.: s. n.], 2021. Str. 59. https://oxabs-programme-files-prod-eu.s3.amazonaws.com/ae1019bc-f4f1-4021-9f9f-c9ed6a6fdab4.pdf. [COBISS.SI-ID 67871235]

10. DRGAN, Viktor, BAJŽELJ, Benjamin. An extension of the CPANN algorithm to assist in the interpretation of model predictions. V: Book of abstracts : QSAR 2023 : 20th International Workshop on (Quantitative) Structure-Activity Relationships in Environmental and Health Sciences : 5 - 9 June 2023 in Copenhagen, Denmark. [S. l.: s. n.], 2023. Str. 63. [COBISS.SI-ID 157190915]

11. DRGAN, Viktor, BAJŽELJ, Benjamin, VENKO, Katja. Grouping of endocrine disruptors based on molecular descriptors and docking data. V: DEKANT, Wolfgang (ur.). Abstracts of the 57th Congress of the European Societies of Toxicology : (EUROTOX 2023) : toxicology – multidisciplinary science leading to safer and sustainable life : Ljubljana, Slovenia, 10 –13 September 2023. Berlin: Springer, 2023. Str. s136-s137. Toxicology letters (Online), Vol. 384, suppl. 1. ISSN 1879-3169. https://toxlet-384-s1.elsevierdigitaledition.com/. [COBISS.SI-ID 169868547]

12. TRČEK, Hana, BAJŽELJ, Benjamin, RAZPOTNIK, Rok, PETRIČ, Miha, PLEŠNIK, Boštjan, DJOKIĆ, Mihajlo, PLAHUTA, Irena, IVANECZ, Arpad, TROTOVŠEK, Blaž, REŽEN, Tadeja, ROZMAN, Damjana, et al. Exploring the circRNA landscape in hepatocellular carcinoma with longread nanopore sequencing. V: NADIŽAR, Nejc (ur.). 19th CFGBC Symposium : book of abstracts : Slovenia, 6th June 2024. Ljubljana: University of Ljubljana, Faculty of Medicine, 2024. Str. 47. http://cfgbc.mf.uni-lj.si/wp-content/uploads/bookofabstracts_2024cfgbcsym19.pdf. [COBISS.SI-ID 205822723]

13. BAJŽELJ, Benjamin, DRGAN, Viktor. Improving QSAR hepatotoxicity predictions using protein-ligand interaction docking scores. V: 24th EuroQSAR : September 22-26, 2024, Barcelona, Spain : book of abstracts. [S. l.: s. n.], 2024. Str. 345. [COBISS.SI-ID 212613891]

14. TRČEK, Hana (avtor, korespondenčni avtor), BAJŽELJ, Benjamin, RAZPOTNIK, Rok, TROTOVŠEK, Blaž, IVANECZ, Arpad, PETRIČ, Miha, DJOKIĆ, Mihajlo, PLEŠNIK, Boštjan, PLAHUTA, Irena, ZAPLOTNIK, Martin, CELLNER, Linda, JANŠA, Rado, VIDMAR, Robert, FONOVIĆ, Marko, PROSENC ZMRZLJAK, Uršula, HUDLER, Petra, ROZMAN, Damjana, REŽEN, Tadeja, et al. Krožne RNA in hepatocelularni karcinom. V: KRANJC BREZAR, Simona (ur.), ČEMAŽAR, Maja (ur.), ZADNIK, Vesna (ur.). 1. slovenski znanstveni simpozij o raziskavah raka : Rak trebušne slinavke : 11. oktober 2024, Onkološki inštitut Ljubljana : zbornik prispevkov in povzetkov. 1. izd. Ljubljana: Onkološki inštitut: Združenje za radioterapijo in onkologijo pri Slovenskem zdravniškem društvu, 2024. Str. 65-66. ISBN 978-961-7029-86-4. DiRROS - Digitalni repozitorij raziskovalnih organizacij Slovenije. [COBISS.SI-ID 228772099]

15. BAJŽELJ, Benjamin, TRČEK, Hana, REŽEN, Tadeja. Bioinformatics in the detection and analysis of differentially expressed circrnas in hepatocellular carcinoma. V: NADIŽAR, Nejc (ur.). 20th CFGBC Symposium : book of abstracts : Slovenia, 11th – 12th June 2025. Electronic version. Ljubljana: University of Ljubljana, Faculty of Medicine, 2025. Str. 36. http://cfgbc.mf.uni-lj.si/wp-content/uploads/2025cfgbcsym20_bookofabstracts.pdf. [COBISS.SI-ID 240784899]

16. TRČEK, Hana, RAZPOTNIK, Rok, BAJŽELJ, Benjamin, LAZIĆ-MATIĆ, Marija, ZAPLOTNIK, Martin, TROTOVŠEK, Blaž, DJOKIĆ, Mihajlo, PETRIČ, Miha, PLEŠNIK, Boštjan, PLAHUTA, Irena, ROZMAN, Damjana, REŽEN, Tadeja (avtor, korespondenčni avtor), et al. Circular RNAs in liver cancer : from functional characterization biomarker discovery. V: ŽEGURA, Bojana (ur.), et al. CutCancer Final Conference 2025 : shaping tomorrow : innovative approaches in genetic toxicology and cancer research : October 22nd-23rd 2025, National Institute of Biology (NIB) : book of abstracts. 1st ed. Ljubljana: National Institute of Biology, 2025. Str. 16. https://dirros.openscience.si/Dokument.php?id=35430&lang=slv. [COBISS.SI-ID 257137667]
projekt: J3-4513, P1-0390, IP-0022 (CFGBC); financer: Slovenian Research and Innovation Agency (ARIS)

17. TRČEK, Hana, BAJŽELJ, Benjamin, RAZPOTNIK, Rok, PETRIČ, Miha, PLEŠNIK, Boštjan, DJOKIĆ, Mihajlo, TROTOVŠEK, Blaž, PLAHUTA, Irena, IVANECZ, Arpad, ROZMAN, Damjana, REŽEN, Tadeja. Comprehensive circRNA profiling in a european cohort of hepatocellular carcinoma patients using short- and longread sequencing. V: NADIŽAR, Nejc (ur.). 20th CFGBC Symposium : book of abstracts : Slovenia, 11th – 12th June 2025. Electronic version. Ljubljana: University of Ljubljana, Faculty of Medicine, 2025. Str. 87. http://cfgbc.mf.uni-lj.si/wp-content/uploads/2025cfgbcsym20_bookofabstracts.pdf. [COBISS.SI-ID 240790019]

18. REŽEN, Tadeja, TRČEK, Hana, RAZPOTNIK, Rok, BAJŽELJ, Benjamin, LAZIĆ-MATIĆ, Marija, ZAPLOTNIK, Martin, TROTOVŠEK, Blaž, DJOKIĆ, Mihajlo, PETRIČ, Miha, PLEŠNIK, Boštjan, PLAHUTA, Irena, IVANECZ, Arpad, CELLNER, Linda, ŠMID, Lojze, JANŠA, Rado, HUDLER, Petra, VIDMAR, Robert, FONOVIĆ, Marko, PROSENC ZMRZLJAK, Uršula, ROZMAN, Damjana. Unraveling circRNA functions in hepatocellular carcinoma. V: NADIŽAR, Nejc (ur.). 20th CFGBC Symposium : book of abstracts : Slovenia, 11th – 12th June 2025. Electronic version. Ljubljana: University of Ljubljana, Faculty of Medicine, 2025. Str. 20. http://cfgbc.mf.uni-lj.si/wp-content/uploads/2025cfgbcsym20_bookofabstracts.pdf. [COBISS.SI-ID 240794115]

19. BAJŽELJ, Benjamin, NOVIČ, Marjana, DRGAN, Viktor. Utilizing molecular descriptor importance to enhance endpoint predictions. Toxics. 2025, vol. 13, iss. 5, [article no.] 383, str. 1-12, ilustr. ISSN 2305-6304. https://www.mdpi.com/2305-6304/13/5/383, DiRROS - Digitalni repozitorij raziskovalnih organizacij Slovenije, DOI: 10.3390/toxics13050383. [COBISS.SI-ID 238997763]