Matic Kovačič

1. KOVAČIČ, Matic. Stabilizacija G-kvadrupleksa trombin-vezavnega aptamera s pirenskimi skupinami : diplomsko delo na univerzitetnem študiju Biokemija. Ljubljana: [M. Kovačič], 2016. 44 f., ilustr. [COBISS.SI-ID 1537117379]

2. KOVAČIČ, Matic. Določanje struktur G-kvadrupleksov stabiliziranih s pirenskimi skupinami : magistrsko delo. Ljubljana: [M. Kovačič], 2018. V, 68 str., ilustr. [COBISS.SI-ID 1538040259]

3. KOVAČIČ, Matic. Stabilizacija z gvanini bogatih nekanoničnih DNA struktur s pirenskimi skupinami = Stabilization of guanine-rich non-canonical DNA structures with pyrene groups. V: Zbornik znanstvenih radova. XXII. Međunarodna Tehnologijada, Trogir, 7. - 13. svibnja 2018. Zagreb: Fakultet kemijskog inženjerstva i tehnologije, 2018. Str. 12. [COBISS.SI-ID 1537794243]

4. KOVAČIČ, Matic, PODBEVŠEK, Peter, TATEISHI-KARIMATA, Hisae, SUGIMOTO, Naoki, PLAVEC, Janez, TRANTÍREK, Lukáš. TBA G-quadruplex structures with covalently bound pyrene. V: PODBEVŠEK, Peter (ur.), PLAVEC, Janez (ur.). Advances in noncanonical nucleic acids : ANNA 2018, Portorož, Slovenia, October 25th - 27th, 2018. Ljubljana: Slovenian NMR Centre, National Institute of Chemistry, 2018. Str. 44. ISBN 978-961-6104-40-1. [COBISS.SI-ID 6528794]

5. KOVAČIČ, Matic, PODBEVŠEK, Peter, TATEISHI-KARIMATA, Hisae, SUGIMOTO, Naoki, PLAVEC, Janez. Thrombin binding aptamer G-quadruplex stabilized by pyrene modified nucleotides. V: XXIII International Roundtable on Nucleosides, Nucleotides and Nucleic Acids, La Jolla, California, August 26 - 30, 2018. La Jolla: [s. n.], 2018. Str. [123]. http://irt2018.ucsd.edu/IRT%202018%20Program%20and%20Abstracts.pdf. [COBISS.SI-ID 6548506]

6. KOVAČIČ, Matic. Določanje struktur G-kvadrupleksov, stabiliziranih s pirenskimi skupinami = Structure determination of G-quadruplexes stabilised with pyrene moieties. V: PLEVNIK, Miha (ur.). 49. Krkine nagrade : znanost povezuje : zbornik povzetkov : 29. simpozij, Novo mesto, 18. oktober 2019. Novo mesto: Krka, 2019. Str. 59. [COBISS.SI-ID 40251397]

7. KOVAČIČ, Matic, PODBEVŠEK, Peter, TATEISHI-KARIMATA, Hisae, SUGIMOTO, Naoki, PLAVEC, Janez. Effects of pyrene moiety incorporation on G-quadruplex structures. V: 21st ISMAR - 15th EUROISMAR, August 25-30, 2019, Berlin : joint conference : GDCh FGMR Discussion Meeting. Berlin: [s. n.], 2019. Str. 448. [COBISS.SI-ID 6704410]

8. KOVAČIČ, Matic, PODBEVŠEK, Peter, TATEISHI-KARIMATA, Hisae, SUGIMOTO, Naoki, PLAVEC, Janez. Incorporation of pyrene moiety into G-quadruplex structures. V: PODBEVŠEK, Peter (ur.), PLAVEC, Janez (ur.). Advances in noncanonical nucleic acids : ANNA 2019, Rogaška Slatina, Slovenia, October 17th - 19th, 2019 : [programme and book of abstracts]. Ljubljana: Slovenian NMR Centre, National Institute of Chemistry, 2019. Str. 46. ISBN 978-961-6104-47-0. [COBISS.SI-ID 40256773]

9. KOVAČIČ, Matic, PODBEVŠEK, Peter, TATEISHI-KARIMATA, Hisae, SUGIMOTO, Naoki, PLAVEC, Janez. Thrombin-binding aptamer G-quadruplex structures modified with pyrene. V: NMR : a tool for biology XIth : program & abstract book : January 28-30, 2019, Institut Pasteur, Paris - France. Paris: [s. n.], 2019. Str. 71. [COBISS.SI-ID 6571034]

10. KOVAČIČ, Matic, ILC, Gregor, DE MARCO, Ario. A10 nanobody protein backbone assignation. Madison: University of Wisconsin System, BMRB, 2020. 1 spletni vir. http://www.bmrb.wisc.edu/data_library/summary/index.php?bmrbId=50414, Repozitorij Univerze v Novi Gorici - RUNG. [COBISS.SI-ID 25159683]

11. UMERANI, Mehran J., PRATAKSHYA, Preeta, CHATTERJEE, Atrouli, CERNA SANCHEZ, Juana A., KIM, Ho Shin, ILC, Gregor, KOVAČIČ, Matic, MAGNAN, Christophe, MARMIROLI, Benedetta, SARTORI, Barbara, KWANSA, Albert L., ORINS, Helen, BARTLETT, Andrew W., LEUNG, Erica M., FENG, Zhijing, NAUGHTON, Kyle L., NORTON-BAKER, Brenna, PHAN, Long, LONG, James, ALLEVATO, Alex, LEAL-CRUZ, Jessica E., LIN, Qiyin, BALDI, Pierre, BERNSTORFF, Sigrid, PLAVEC, Janez, YINGLING, Yaroslava G., GORODETSKY, Alon A. Structure, self-assembly, and properties of a truncated reflectin variant. Proceedings of the National Academy of Sciences of the United States of America. [Online ed.]. 29 Dec. 2020, vol. 117, iss. 52, str. 32891-32901, ilustr. ISSN 1091-6490. https://www.pnas.org/content/117/52/32891, DOI: 10.1073/pnas.2009044117. [COBISS.SI-ID 45983235]

12. KOVAČIČ, Matic, PODBEVŠEK, Peter, TATEISHI-KARIMATA, Hisae, TAKAHASHI, Shuntaro, SUGIMOTO, Naoki, PLAVEC, Janez. Thrombin binding aptamer G-quadruplex stabilized by pyrene-modified nucleotides. Nucleic acids research. 17 Apr. 2020, vol. 48, iss. 7, str. 3975-3986, ilustr. ISSN 0305-1048. https://academic.oup.com/nar/article/48/7/3975/5755880?searchresult=1, DOI: 10.1093/nar/gkaa118. [COBISS.SI-ID 14909187]

13. UBBIALI, Daniele, ORLANDO, Marco, KOVAČIČ, Matic, IACOBUCCI, Claudio, SEMRAU, Marta S., BAJC, Gregor, FORTUNA, Sara, ILC, Gregor, MEDAGLI, Barbara, OLOKETUYI, Sandra, DE MARCO, Ario, et al. An anti-HER2 nanobody binds to its antigen HER2 via two independent paratopes. International journal of biological macromolecules. [Print ed.]. Jul. 2021, vol. 182, str. 502-511, ilustr. ISSN 0141-8130. Repozitorij Univerze v Novi Gorici - RUNG, DOI: 10.1016/j.ijbiomac.2021.04.032. [COBISS.SI-ID 59741443]

14. KOVAČIČ, Matic, PODBEVŠEK, Peter, TATEISHI-KARIMATA, Hisae, TAKAHASHI, Shuntaro, SUGIMOTO, Naoki, PLAVEC, Janez. Pyrene modified analogues of thrombin binding aptamer exhibit unique structural features. V: Molecules of life : towards new horizons : FEBS 2021 : the 45th FEBS Congress : 3-8 July 2021, Ljubljana, Slovenia : virtual : abstracts. [S. l.]: Federation of European Biochemical Societies. 2021, str. [1]. https://2021.febscongress.org/abstract_preview.aspx?idAbstractEnc=4424170095091091099093424170. [COBISS.SI-ID 70519811]

15. KOVAČIČ, Matic, PODBEVŠEK, Peter, PLAVEC, Janez, TATEISHI-KARIMATA, Hisae, TAKAHASHI, Shuntaro, SUGIMOTO, Naoki. Unique structural features of pyrene-modified G-quadruplex revealed by NMR. V: LENARČIČ ŽIVKOVIĆ, Martina (ur.), et al. EUROMAR : European Conference on Magnetic Resonance : 5th - 8th July 2021 : book of abstracts. Ljubljana: En-Fist Centre of Excellence, 2021. Str. 164. ISBN 978-961-95442-0-4. [COBISS.SI-ID 70510851]

16. KOVAČIČ, Matic, PLAVEC, Janez. NMR study of the interaction between ALS related G-quadruplex and nucleolin-derived RG/RGG-rich peptides. V: NMR : a tool for biology : programme book : May 2-4, 2022, Institut Pasteur, Paris. Paris: Institut Pasteur, 2022. Str. 59. [COBISS.SI-ID 108932355]

17. KOVAČIČ, Matic. Exploring the binding behavior of RGG peptides and G‐quadruplexes : mini‐symposium »Frontiers on Wonderful World of Nucleic Acids 2023«, Slovenski etnografski muzej, Ljubljana, 25. 1. 2023. [COBISS.SI-ID 141266691]

18. KOVAČIČ, Matic, PLAVEC, Janez. Unraveling the dynamics of the G-quadruplex/RG-rich peptide complexes by NMR. V: EUROMAR 2023 : the 19th European Magnetic Resonance Meeting 2023, 9-13 July, Glasgow : programme & abstract book. Edinburgh: Scotland, 2023. Str. [371]. https://euromar2023.org/wp-content/uploads/2023/07/PA-Book-V2.pdf. [COBISS.SI-ID 162911747]

19. KOVAČIČ, Matic, PLAVEC, Janez. Unraveling the specificity of the G-quadruplex/RG-rich peptide interactions by NMR. V: PODBEVŠEK, Peter (ur.), PLAVEC, Janez (ur.). ANNA 2023 : Advances in Noncanonical Nucleic Acids : book of abstracts : Maribor, Slovenia, October 18th – 21st, 2023. Ljubljana: Slovenian NMR Centre, National Institute of Chemistry, 2023. Str. 53. ISBN 978-961-6104-88-3. https://www.slonmr.si/anna_2023/ANNA2023BookOfAbstracts.pdf. [COBISS.SI-ID 187321859]

20. PRATAKSHYA, Preeta, KWANSA, Albert L., KOVAČIČ, Matic, KAIMAL, Nikhil, PANTELEEV, Arsenii, CHATTERJEE, Atrouli, TOLOUEI, Nadia E., KAUTZ, Rylan, NAUGHTON, Kyle L., PLAVEC, Janez, et al. Bulk proton conduction in films from a truncated reflectin variant. APL materials. Nov. 2024, vol.12, iss. 10, [article no.] 101113, str. 1-8, ilustr. ISSN 2166-532X. https://pubs.aip.org/aip/apm/article/12/10/101113/3317312/Bulk-proton-conduction-in-films-from-a-truncated, DiRROS - Digitalni repozitorij raziskovalnih organizacij Slovenije, DOI: 10.1063/5.0214285. [COBISS.SI-ID 216566019]

21. HADŽI, San, ŽIVIČ, Zala, KOVAČIČ, Matic, ZAVRTANIK, Uroš, HAESAERTS, Sarah, CHARLIER, Daniel, PLAVEC, Janez, VOLKOV, Alexander N., LAH, Jurij, LORIS, Remy. Fuzzy recognition by the prokaryotic transcription factor HigA2 from Vibrio cholerae. Nature communications. 10 Apr. 2024, vol. 15, article no. 3105, str. 1-12, ilustr. ISSN 2041-1723. https://www.nature.com/articles/s41467-024-47296-3, DOI: 10.1038/s41467-024-47296-3. [COBISS.SI-ID 195249411]

22. KOVAČIČ, Matic, PLAVEC, Janez (diskutant). NMR study of interaction between G-quadruplex forming DNA oligonucleotides and RG-rich peptides : IOPC, International oligonucleotides and peptides conference, Milan, 25-26 June 2024. [COBISS.SI-ID 217457411]

23. KOVAČIČ, Matic, PLAVEC, Janez. Unraveling the effect of binding of the RG-rich peptides to G-quadruplex structures by NMR. V: PODBEVŠEK, Peter (ur.), PLAVEC, Janez (ur.). ANNA 2024 : Advances in Noncanonical Nucleic Acids : book of abstracts : Portorož, Slovenia, October 24th - 26th, 2024. Ljubljana: Slovenian NMR Centre, National Institute of Chemistry, 2024. Str. 54. ISBN 978-961-6104-98-2. https://slonmr.si/anna_2024/ANNA2024BookOfAbstracts.pdf. [COBISS.SI-ID 217379075]