Noël Malod-Dognin

1. MALOD-DOGNIN, Noël, PRŽULJ, Nataša. GR-Align : fast and flexible alignment of protein 3D structures using graphlet degree similarity. Bioinformatics. [Print ed.]. 2014, vol. 30, no. 9, str. 1259-1265. ISSN 1367-4803. http://bioinformatics.oxfordjournals.org/content/30/9/1259, DOI: 10.1093/bioinformatics/btu020. [COBISS.SI-ID 2048314643]

2. GLIGORIJEVIĆ, Vladimir, MALOD-DOGNIN, Noël, PRŽULJ, Nataša. Integrative methods for analyzing big data in precision medicine. Proteomics. [Print ed.]. 2016, vol. 16, iss. 5, str. 741-758. ISSN 1615-9853. DOI: 10.1002/pmic.201500396. [COBISS.SI-ID 2048353299]

3. MALOD-DOGNIN, Noël, PRŽULJ, Nataša. L-GRAAL : lagrangian graphlet-based network aligner. Bioinformatics. [Print ed.]. 2015, vol. 31, no. 13, str. 2182-2189. ISSN 1367-4803. DOI: 10.1093/bioinformatics/btv130. [COBISS.SI-ID 2048353555]

4. DAVIS, Darren, YAVEROĞLU, Ömer Nebil, MALOD-DOGNIN, Noël, STOJMIROVIC, Aleksandar, PRŽULJ, Nataša. Topology-function conservation in protein-protein interaction networks. Bioinformatics. [Print ed.]. 2015, vol. 31, no. 10, str. 1632-1639. ISSN 1367-4803. http://bioinformatics.oxfordjournals.org/content/31/10/1632.full.pdf+html, DOI: 10.1093/bioinformatics/btv026. [COBISS.SI-ID 2048352275]

5. GLIGORIJEVIĆ, Vladimir, MALOD-DOGNIN, Noël, PRŽULJ, Nataša. Fuse : multiple network alignment via data fusion. Bioinformatics. [Print ed.]. 2016, vol. 32, no. 8, str. 1195-1203. ISSN 1367-4803. DOI: 10.1093/bioinformatics/btv731. [COBISS.SI-ID 2048353811]

6. PRŽULJ, Nataša, MALOD-DOGNIN, Noël. Network analytics in the age of big data : How can we holistically mine big data?. Science. 2016, vol. 353, no. 6295, str. 123-124. ISSN 0036-8075. http://dx.doi.org/10.1126/science.aah3449. [COBISS.SI-ID 17824857]

7. MALOD-DOGNIN, Noël, PRŽULJ, Nataša. Omics data complementarity underlines functional cross-communication in yeast. Journal of integrative bioinformatics. [Spletna izd.]. June 2017, vol. 14, iss. 2, art. 20170018 (10str.). ISSN 1613-4516. https://doi.org/10.1515/jib-2017-0018, DOI: 10.1515/jib-2017-0018. [COBISS.SI-ID 18281561]

8. YAVEROĞLU, Ömer Nebil, MALOD-DOGNIN, Noël, MILENKOVIĆ, Tijana, PRŽULJ, Nataša. Rebuttal to the Letter to the Editor in response to the paper : proper evaluation of alignment-free network comparison methods. Bioinformatics. [Print ed.]. Apr. 2017, vol. 33, iss. 7, str. 1107-1109. ISSN 1367-4803. https://doi.org/10.1093/bioinformatics/btw388, DOI: 10.1093/bioinformatics/btw388. [COBISS.SI-ID 18286681]

9. MALOD-DOGNIN, Noël, BAN, Kristina, PRŽULJ, Nataša. Unified alignment of protein-protein interaction networks. Scientific reports. 2017, vol. 7, art. no. 953, str. 1-10. ISSN 2045-2322. DOI: 10.1038/s41598-017-01085-9. [COBISS.SI-ID 2048451603]

10. GAUDELET, Thomas, MALOD-DOGNIN, Noël, PRŽULJ, Nataša. Higher-order molecular organization as a source of biological function. Bioinformatics. [Print ed.]. Sep. 2018, vol. 34, iss. 17, str. i944-i953. ISSN 1367-4803. https://doi.org/10.1093/bioinformatics/bty570, DOI: 10.1093/bioinformatics/bty570. [COBISS.SI-ID 18584153]

11. MALOD-DOGNIN, Noël, PETSCHNIGG, Julia, PRŽULJ, Nataša. Precision medicine - A promising, yet challenging road lies ahead. Current opinion in systems biology. Feb. 2018, vol. 7, str. 1-7. ISSN 2452-3100. https://doi.org/10.1016/j.coisb.2017.10.003, DOI: 10.1016/j.coisb.2017.10.003. [COBISS.SI-ID 18280025]

12. MALOD-DOGNIN, Noël, PRŽULJ, Nataša. Functional geometry of protein interactomes. Bioinformatics. [Print ed.]. Oct. 2019, vol. 35, iss. 19, str. 3727-3734. ISSN 1367-4803. https://doi.org/10.1093/bioinformatics/btz146, DOI: 10.1093/bioinformatics/btz146. [COBISS.SI-ID 18939737]

13. WINDELS, Sam F. L., MALOD-DOGNIN, Noël, PRŽULJ, Nataša. Graphlet Laplacians for topology-function and topology-disease relationships. Bioinformatics. [Print ed.]. Dec. 2019, vol. 35, iss. 24, str. 5226-5234. ISSN 1367-4803. https://doi.org/10.1093/bioinformatics/btz455, DOI: 10.1093/bioinformatics/btz455. [COBISS.SI-ID 18939481]

14. MALOD-DOGNIN, Noël, WINDELS, Sam F. L., PRŽULJ, Nataša. Machine learning for data integration in cancer precision medicine : matrix factorization approaches. V: PRŽULJ, Nataša (ur.). Analyzing network data in biology and medicine : an interdisciplinary textbook for biological, medical and computational scientists. Cambridge [etc.]: Cambridge University Press, 2019. Str. 286-312, graf. prikazi. ISBN 978-1-108-43223-8, ISBN 1-108-43223-9. [COBISS.SI-ID 19588867]

15. MALOD-DOGNIN, Noël, PRŽULJ, Nataša. Network alignment. V: PRŽULJ, Nataša (ur.). Analyzing network data in biology and medicine : an interdisciplinary textbook for biological, medical and computational scientists. Cambridge [etc.]: Cambridge University Press, 2019. Str. 369-413, graf. prikazi. ISBN 978-1-108-43223-8, ISBN 1-108-43223-9. [COBISS.SI-ID 19594755]

16. MALOD-DOGNIN, Noël, PETSCHNIGG, Julia, WINDELS, Sam F. L., POVH, Janez, HEMMINGWAY, Harry, KETTELER, Robin, PRŽULJ, Nataša. Towards a data-integrated cell. Nature communications. Feb. 2019, [vol.] 10, f. 1-13, ilustr. ISSN 2041-1723. https://www.nature.com/articles/s41467-019-08797-8, Repozitorij Univerze v Ljubljani – RUL, DOI: 10.1038/s41467-019-08797-8. [COBISS.SI-ID 16484379]

17. PERIN, Nataša, REP, Valentina, SOVIĆ, Irena, JURIČIĆ, Štefica, SELGRAD, Danijel, KLOBUČAR, Marko, PRŽULJ, Nataša, GUPTA, Chhedi Lal, MALOD-DOGNIN, Noël, KRALJEVIĆ-PAVELIĆ, Sandra, HRANJEC, Marijana. Antiproliferative activity and mode of action analysis of novel amino and amido substituted phenantrene and naphtho [2, 1-b] thiophene derivatives. European journal of medicinal chemistry. [Print ed.]. Jan. 2020, vol. 185, art. 111833 (13 str.), ilustr. ISSN 0223-5234. https://www.sciencedirect.com/science/article/pii/S0223523419309857, DOI: 10.1016/j.ejmech.2019.111833. [COBISS.SI-ID 58044931]

18. MALOD-DOGNIN, Noël, PANCALDI, Vera, VALENCIA, Alfonso, PRŽULJ, Nataša. Chromatin network markers of leukemia. V: ISMB 2020 Proceedings. Oxford: Oxford University Press, July 2020. Str. 455-463. Bioinformatics (Oxford. Print), Vol. 36, Iss. Suppl. 1. ISSN 1367-4803. https://doi.org/10.1093/bioinformatics/btaa445, DOI: 10.1093/bioinformatics/btaa445. [COBISS.SI-ID 57849091]

19. DORIA-BELENGUER, Sergio, YOUSSEF, Markus K., BÖTTCHER, René, MALOD-DOGNIN, Noël, PRŽULJ, Nataša. Probabilistic graphlets capture biological function in probabilistic molecular networks. V: ECCB2020 Proceedings. Oxford: Oxford University Press, Dec. 2020. Str. 804-812. Bioinformatics (Oxford. Print), Vol. 36, Iss. Suppl. 2. ISSN 1367-4803. https://doi.org/10.1093/bioinformatics/btaa812, DOI: 10.1093/bioinformatics/btaa812. [COBISS.SI-ID 57826051]

20. GAUDELET, Thomas, MALOD-DOGNIN, Noël, SÁNCHEZ-VALLE, Jon, PRŽULJ, Nataša. Unveiling new disease, pathway, and gene associations via multi-scale neural network. PloS one. Apr. 2020, vol. 15, iss. 4, art. 0231059 (12 str.), ilustr. ISSN 1932-6203. https://doi.org/10.1371/journal.pone.0231059, DOI: 10.1371/journal.pone.0231059. [COBISS.SI-ID 57930243]