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Žiga Strmšek

Osebna bibliografija za obdobje 2008-2025

2008

1. STRMŠEK, Žiga. Kvaliteta sivkinega eteričnega olja? Ali dobim to, kar plačam? : raziskovalna naloga. [Ljubljana]: Gimnazija Poljane, 2008. 20 f., ilustr. [COBISS.SI-ID 10121267]

2012

2. STRMŠEK, Žiga, KUNEJ, Tanja. Catalogue of microRNA genes silenced by DNA methylation in cancer : facilitating development of novel biomarkers. V: KUNEJ, Tanja (ur.), GODNIČ, Irena (ur.). iTIME brainstorming : zbornik povzetkov = book of abstracts. Domžale: Univerza v Ljubljani, Biotehniška fakulteta, Oddelek za zootehniko, 2012. Str. 17. [COBISS.SI-ID 3167880]
3. STRMŠEK, Žiga, GODNIČ, Irena, ZORC, Minja, DOVČ, Peter, KUNEJ, Tanja. DNA methylation of microRNA genes in cancer: a source of novel epigenetic biomarkers. V: POTOČNIK, Uroš (ur.). Genetika 2012 : book of abstracts = zbornik povzetkov. Ljubljana: Genetic Society of Slovenia, 2012. Str. 130. ISBN 978-961-90534-7-8. [COBISS.SI-ID 3119240]

2013

4. STRMŠEK, Žiga, JEVŠINEK SKOK, Daša, KUNEJ, Tanja. Atlas of miR-34 gene family regulatory network and its therapeutical potential. V: RAMŠAK, Andreja (ur.), POTOČNIK, Uroš (ur.). Proceedings. 3rd Colloquium of genetics, Piran September 13th 2013. Ljubljana: Genetic Society of Slovenia, 2013. Str. 27. ISBN 978-961-90534-9-2, ISBN 978-961-93545-0-6. [COBISS.SI-ID 3270280]
5. STRMŠEK, Žiga, GODNIČ, Irena, DOVČ, Peter, KUNEJ, Tanja. Catalogue of miRNA genes silenced by DNA methylatiation - the source of novel cancer biomarkers. V: SERŠA, Gregor (ur.), et al. Book of abstracts. 7th Conference on Experimental and Translational Oncology, Portorož, Slovenia, April, 20-24, 2013. Ljubljana: Association of Radiology and Oncology, 2013. Str. 156. ISBN 978-961-91302-4-7. [COBISS.SI-ID 3221896]
6. STRMŠEK, Žiga. Izdelava animacije : področje računalništvo in informatika. Ljubljana: Srednja šola tehniških strok Šiška, 2013. 27 f., ilustr. [COBISS.SI-ID 11925299]
7. STRMŠEK, Žiga. Uravnavanje izražanja genov za mikroRNA z metilacijo DNA pri raku : diplomski seminar = Regulation of expression of microRNA genes by DNA methylation in cancer : B. Sc. thesis. Ljubljana: [Ž. Strmšek], 2013. VI, 19 f., ilustr. Biotehniška fakulteta, Študij biotehnologije, Diplomski seminar univerzitetni študij - 1. stopnja, 121. [COBISS.SI-ID 7605625]

2014

8. STRMŠEK, Žiga, KUNEJ, Tanja. Catalogue of microRNA genes silenced by DNA methylation in cancer : facilitating development of novel biomarkers. V: RAMŠAK, Andreja (ur.), POTOČNIK, Uroš (ur.). Proceedings. 4th Colloquium of Genetics, Piran, September 19th 2014. Ljubljana: Genetic Society of Slovenia, 2014. Str. 65. ISBN 978-961-90534-8-5. [COBISS.SI-ID 3435912]
9. STRMŠEK, Žiga, KUNEJ, Tanja. Data integration of 104 studies related with microRNA epigenetics revealed that miR-34 gene family is silenced by DNA methylation in the highest number of cancer types. Discoveries. 2014, vol. 2, no. 2, str. 1-12, e18. ISSN 2359-7232. http://www.discoveriesjournals.org/D.2014.02.EA-Dr%20Kunej.pdf, DOI: 10.1519/d.2014.10. [COBISS.SI-ID 3405704]
10. STRMŠEK, Žiga, KUNEJ, Tanja. Geni za mikro RNA in metilacija DNA - prihodnost onkogenih terapevtikov? = MicroRNA genes and DNA methylation - the future of oncogenic therapeutics?. V: KUNEJ, Tanja (ur.), OBŠTETER, Jana (ur.), JEVŠINEK SKOK, Daša (ur.). iTIME brainstorming : zbornik prispevkov = proceedings. 2. Simpozij raziskovalne mreže Integratomics TIME Domžale, 19. 12. 2013. Domžale: Univerza v Ljubljani, Biotehniška fakulteta, Oddelek za zootehniko, 2014. Str. 32-33, ilustr. [COBISS.SI-ID 3384456]
11. ŽARGI, Hana, STRMŠEK, Žiga, KUNEJ, Tanja. Modifikacija bakterije Escherichia coli za proizvodnjo n-butanola iz butanojske kisline = Modification of bacteria Escherichia coli for the production of n-butanol from butyric acid. V: KUNEJ, Tanja (ur.), ZORC, Minja (ur.). iTIME brainstorming : zbornik prispevkov = proceedings. 3. Simpozij raziskovalne mreže Integratomics TIME Domžale, 12. 9. 2014. Domžale: Univerza v Ljubljani, Biotehniška fakulteta, Oddelek za zootehniko, 2014. Str. 17-20. [COBISS.SI-ID 3439496]
12. STRMŠEK, Žiga, KUNEJ, Tanja. Razvoj kataloga miRNA genov uravnavanih z metilacijo DNA pri raku : omogočanje razvoja biooznačevalcev in terapevtskih tarč = Development of the catalog of miRNA genes regulated by DNA methylation in cancer : enabling development of cancer biomarkers and therapeutic targets. V: KUNEJ, Tanja (ur.), ZORC, Minja (ur.). iTIME brainstorming : zbornik prispevkov = proceedings. 3. Simpozij raziskovalne mreže Integratomics TIME Domžale, 12. 9. 2014. Domžale: Univerza v Ljubljani, Biotehniška fakulteta, Oddelek za zootehniko, 2014. Str. 29-33. [COBISS.SI-ID 3439752]

2015

13. STRMŠEK, Žiga, MOČNIK RONER, Maša, ZORC, Minja, KUNEJ, Tanja. Databse of microRNA genes regulated by DNA methylation in cancer : 2015 update, biomarker prioritization and identification of novel miRNA-cancer associations. V: JAKŠE, Jernej (ur.), et al. Genetika 2015 : book of abstracts. 7th Congress of the Genetic Society of Slovenia and 7th Meeting of the Slovenian Society of Human Genetics, 20-23 September 2015, Rogaška Slatina, Slovenia. Ljubljana: Genetic Society of Slovenia: The Slovenian Society of Human Genetics, 2015. Str. 96. ISBN 978-961-93545-2-0. [COBISS.SI-ID 3620488]
14. STRMŠEK, Žiga, MOČNIK RONER, Maša, KUNEJ, Tanja. Development of the workflow for prioritization of novel miRNA-cancer associations based on the database of miRNA genes regulated by DNA methylation in cancer = Razvoj sheme odločanja za prioritizacijo novih povezav med miRNA in rakom na podlagi podatkovne zbirke miRNA genov, uravnavanih z metilacijo DNA pri raku. V: TRAVEN, Eva (ur.), ZORC, Minja (ur.), KUNEJ, Tanja (ur.). iTIME brainstorming : zbornik prispevkov = proceedings. 4. Simpozij raziskovalne mreže Integromics TIME Domžale, 10. 7. 2015. Domžale: Univerza v Ljubljani, Biotehniška fakulteta, Oddelek za zootehniko, 2015. Str. 18-25, ilustr. [COBISS.SI-ID 3606664]
15. STRMŠEK, Žiga, KUNEJ, Tanja. MicroRNA silencing by DNA methylation in human cancer : a literature analysis. Non-coding RNA. 2015, vol. 1, no. 1, str. 44-52. ISSN 2311-553X. http://www.mdpi.com/2311-553X/1/1/44, DOI: 10.3390/ncrna1010044. [COBISS.SI-ID 3541384]
16. STRMŠEK, Žiga. Podatkovna zbirka mikro RNA-genov, uravnavanih z metilacijo DNA pri raku : razvoj, ohranjanje in napoved novih povezav z uporabo podatkovnega rudarjenja = Database of microRNA genes, regulated by DNA methylation in cancer : development, maintanance and prediction of new associations using data mining : [raziskovalno delo]. Ljubljana: [Ž. Strmšek], 2015. VI, 36 f., [73] f. pril., ilustr. [COBISS.SI-ID 3591048]

2016

17. LAPENTA, Fabio, GRADIŠAR, Helena, ROUND, Adam R., BOŽIČ ABRAM, Sabina, LJUBETIČ, Ajasja, DROBNAK, Igor, STRMŠEK, Žiga, AUPIČ, Jana, HAFNER BRATKOVIČ, Iva, LAINŠČEK, Duško, DJINOVIĆ CARUGO, Kristina, BENČINA, Mojca, JERALA, Roman. De novo design of in vivo folding modular topological proteins. V: Protein design - from first principles to biomedical applications. 67th Mosbacher Kolloquium, Mosbach/Baden, Germany, March 31 - April 2, 2016. Mosbach/Baden: [s. n.], 2016. Str. [67]. [COBISS.SI-ID 6058522]
18. LEBEN ZUPET, Katja, KRESE, Rok, PLAPER, Tjaša, FRANKO, Nik, STANOVNIK, Lidija, GRADIŠEK, Miha, MERLJAK, Estera, ROŠKAR, Samo, JERALA, Nina, CEROVIĆ, Kosta, PRAZNIK, Arne, PUŠNIK, Žiga. IGEM 2016 : giant jamboree, October 27-31, Hynes Convention Center, Boston, MA. [COBISS.SI-ID 1537310915]
19. AUPIČ, Jana, LAPENTA, Fabio, STRMŠEK, Žiga, JERALA, Roman. Towards designing new nano-scale protein architectures. Essays in Biochemistry. Nov. 2016, vol. 60, iss. 4, str. 315-324. ISSN 0071-1365. http://essays.biochemistry.org/content/60/4/315.full-text.pdf, DiRROS - Digitalni repozitorij raziskovalnih organizacij Slovenije, DOI: 10.1042/EBC20160018. [COBISS.SI-ID 6076186]

2017

20. LJUBETIČ, Ajasja, DROBNAK, Igor, AUPIČ, Jana, PISANSKI, Tomaž, LAPENTA, Fabio, STRMŠEK, Žiga, GRADIŠAR, Helena, JERALA, Roman. CoCoPOD : a coiled-coil protein origami design platform. V: MOHORČIČ, Martina (ur.), LJUBETIČ, Ajasja (ur.), JERALA, Roman (ur.). Book of abstracts. Bioorigami - designed bionanostructures from nucleic acids to proteins and beyond, Ljubljana, Slovenia, June, 21st - 23rd, 2017. Ljubljana: National institute of Chemistry, 2017. Str. 29. [COBISS.SI-ID 18062169]
21. LJUBETIČ, Ajasja, AUPIČ, Jana, DROBNAK, Igor, PISANSKI, Tomaž, LAPENTA, Fabio, STRMŠEK, Žiga, GRADIŠAR, Helena, JERALA, Roman. Coiled-coil protein origami cages (capable of in vivo self-assembly). V: ANDERLUH, Gregor (ur.), PODOBNIK, Marjetka (ur.). Advances in structural biology : mini simpozij 2017 : [26th October 2017, Ljubljana]. Ljubljana: Department of Molecular Biology and Nanobiotechnology D11, National Institute of Chemistry, 2017. Str. 20, ilustr. ISBN 978-961-6104-37-1. [COBISS.SI-ID 39283973]
22. LJUBETIČ, Ajasja, LAPENTA, Fabio, GRADIŠAR, Helena, DROBNAK, Igor, AUPIČ, Jana, STRMŠEK, Žiga, LAINŠČEK, Duško, HAFNER BRATKOVIČ, Iva, MAJERLE, Andreja, KRIVEC, Nuša, BENČINA, Mojca, PISANSKI, Tomaž, ĆIRKOVIĆ-VELIČKOVIĆ, Tanja, ROUND, Adam R., CARAZO, José María, MELERO, Roberto, JERALA, Roman. Design of coiled-coil protein-origami cages that self-assemble in vitro and in vivo. Nature biotechnology. Nov. 2017, vol. 35, no. 11, str. 1094-1101. ISSN 1087-0156. http://www.nature.com/articles/nbt.3994, DiRROS - Digitalni repozitorij raziskovalnih organizacij Slovenije, DOI: 10.1038/nbt.3994. [COBISS.SI-ID 6266906]
23. LJUBETIČ, Ajasja, LAPENTA, Fabio, GRADIŠAR, Helena, DROBNAK, Igor, AUPIČ, Jana, STRMŠEK, Žiga, LAINŠČEK, Duško, HAFNER BRATKOVIČ, Iva, MAJERLE, Andreja, BENČINA, Mojca, KOČAR, Vid, PISANSKI, Tomaž, ĆIRKOVIĆ-VELIČKOVIĆ, Tanja, ROUND, Adam R., MELERO, Roberto, JERALA, Roman. Design of molecular bioorigami : new modular protein structures and folding pathways. V: MOHORČIČ, Martina (ur.), LJUBETIČ, Ajasja (ur.), JERALA, Roman (ur.). Book of abstracts. Bioorigami - designed bionanostructures from nucleic acids to proteins and beyond, Ljubljana, Slovenia, June, 21st - 23rd, 2017. Ljubljana: National institute of Chemistry, 2017. Str. 21. [COBISS.SI-ID 18061657]
24. LAPENTA, Fabio, AUPIČ, Jana, STRMŠEK, Žiga, DROBNAK, Igor, KRIVEC, Nuša, GRADIŠAR, Helena, MELERO DEL RIO, Roberto, HODNIK, Vesna, JERALA, Roman. Hierarchical self-assembly of a de novo heterodimeric coiled-coil-based bipyramidal protein cage. V: MOHORČIČ, Martina (ur.), LJUBETIČ, Ajasja (ur.), JERALA, Roman (ur.). Book of abstracts. Bioorigami - designed bionanostructures from nucleic acids to proteins and beyond, Ljubljana, Slovenia, June, 21st - 23rd, 2017. Ljubljana: National institute of Chemistry, 2017. Str. 22, ilustr. [COBISS.SI-ID 40266245]
25. LJUBETIČ, Ajasja, GRADIŠAR, Helena, LAPENTA, Fabio, MAJERLE, Andreja, AUPIČ, Jana, STRMŠEK, Žiga, LAINŠČEK, Duško, HAFNER BRATKOVIČ, Iva, BENČINA, Mojca, JERALA, Roman. Next generation in vivo self-assembling coiled-coil protein origami. V: GORIČAR, Katja (ur.), HUDLER, Petra (ur.). Book of abstracts = Zbornik povzetkov. 12th Meeting of the Slovenian Biochemical Society with International Participation = 12. srečanje Slovenskega biokemijskega društva z mednarodno udeležbo, Bled 20 - 23 september 2017. Ljubljana: Slovenian Biochemical Society, 2017. Str. 104. ISBN 978-961-93879-4-8. [COBISS.SI-ID 6262042]

2018

26. LAPENTA, Fabio, AUPIČ, Jana, STRMŠEK, Žiga, JERALA, Roman. Coiled coil protein origami : from modular design principles towards biotechnological applications. Chemical Society reviews. 21 May 2018, vol. 47, iss. 10, str. 3530-3542. ISSN 0306-0012. http://pubs.rsc.org/en/content/articlelanding/2018/cs/c7cs00822h#!divAbstract, DOI: 10.1039/C7CS00822H. [COBISS.SI-ID 6349594]
27. LJUBETIČ, Ajasja, GRADIŠAR, Helena, AUPIČ, Jana, STRMŠEK, Žiga, JERALA, Roman. Extending coiled-coil protein origami using four helix bundles. V: The 43rd FEBS Congress, Prague, 7-12 July 2018. Prague: [s. n.]. 2018, str. [1]. https://2018.febscongress.org/abstract_preview.aspx?idAbstractEnc=4424170093099095100095424170. [COBISS.SI-ID 6442522]
28. LJUBETIČ, Ajasja, GRADIŠAR, Helena, AUPIČ, Jana, STRMŠEK, Žiga, JERALA, Roman. Extending coiled-coil protein origami using four helix bundles. V: Abstract book. The 18th FEBS Young Scientistsʹ Forum, 4-7 July, Prague, Czech Republik. Prague: [s. n.], 2018. Str. 102. [COBISS.SI-ID 6442010]
29. JERALA, Roman, BENČINA, Mojca, MEŠKO, Maja, LEBAR, Tina, LONZARIĆ, Jan, FINK, Tina, STRMŠEK, Žiga, LAPENTA, Fabio, PLAPER, Tjaša, LEBEN ZUPET, Katja, CEROVIĆ, Kosta, MERLJAK, Estera, FRANKO, Nik, KRESE, Rok, GRADIŠEK, Miha, PRAZNIK, Arne, JERALA, Nina, STANOVNIK, Lidija, ROŠKAR, Samo, PUŠNIK, Žiga. Kombinacija razcepljenih ortogonalnih proteaz z dimerizacijskimi domenami, ki omogočajo sestavljanje : patent SI25289 A, 2018-04-30. Ljubljana: Urad RS za intelektualno lastnino, 2018. 88 str., ilustr. [COBISS.SI-ID 6021658]
patentna družina: P-201600252, 2016-10-12; WO2018069782 (A3), 2018-05-24
30. JERALA, Roman, BENČINA, Mojca, MEŠKO, Maja, LEBAR, Tina, LONZARIĆ, Jan, FINK, Tina, STRMŠEK, Žiga, LAPENTA, Fabio, PLAPER, Tjaša, LEBEN ZUPET, Katja, CEROVIĆ, Kosta, MERLJAK, Estera, FRANKO, Nik, KRESE, Rok, GRADIŠEK, Miha, PRAZNIK, Arne, JERALA, Nina, STANOVNIK, Lidija, ROŠKAR, Samo, PUŠNIK, Žiga. Metoda za povečanje občutljivosti celic na ultrazvok in mehanske stimuluse, ki vključuje plinske mehurčke in celice, ki imajo povečano občutljivost mehanosenzorjev : patent SI25290 A, 2018-04-30. Ljubljana: Urad RS za intelektualno lastnino, 2018. 39 str., ilustr. [COBISS.SI-ID 6021914]
patentna družina: P-201600251, 2016-10-10; WO2018069788 (A1) 2018-04-19
31. LAPENTA, Fabio, AUPIČ, Jana, STRMŠEK, Žiga, DROBNAK, Igor, KRIVEC, Nuša, GRADIŠAR, Helena, MELERO DEL RIO, Roberto, HODNIK, Vesna, JERALA, Roman. Self-assembly of a coiled-coil-based bipyramidal protein cage : lecture at the Bioinspired Materials, Gordon Research Conference Bioinspired Multifunctional Dynamic Materials, Les Diablerets Conference Center, Les Diablerets, Switzerland, June 24-29, 2018. [COBISS.SI-ID 40266501]

2019

32. STRMŠEK, Žiga, AUPIČ, Jana, LAPENTA, Fabio, LAINŠČEK, Duško, TUŠAR, Anja, GRADIŠAR, Helena, JERALA, Roman. Coiled-coil protein origami as the scaffold for presentation of functional protein domains. V: KISOVEC, Matic (ur.). Book of abstracts = Knjiga povzetkov. 13th Meeting of the Slovenian Biochemical Society with International Participation = 13. srečanje Slovenskega biokemijskega društva z mednarodno udeležbo, Dobrna, 24 - 27 September 2019. Ljubljana: Slovenian Biochemical Society, 2019. Str. 24. ISBN 978-961-93879-8-6. [COBISS.SI-ID 6725658]
33. FINK, Tina, LONZARIĆ, Jan, PRAZNIK, Arne, PLAPER, Tjaša, MERLJAK, Estera, LEBEN ZUPET, Katja, JERALA, Nina, LEBAR, Tina, STRMŠEK, Žiga, LAPENTA, Fabio, BENČINA, Mojca, JERALA, Roman. Design of fast proteolysis-based signaling and logic circuits in mammalian cells. Nature chemical biology. Feb. 2019, vol. 15, iss. 2, str. 115-122, ilustr. ISSN 1552-4450. https://www.nature.com/articles/s41589-018-0181-6, DOI: 10.1038/s41589-018-0181-6. [COBISS.SI-ID 39867909]
34. GOLOB URBANC, Anja, RAJČEVIĆ, Uroš, STRMŠEK, Žiga, JERALA, Roman. Design of split superantigen fusion proteins for cancer immunotherapy. The Journal of biological chemistry. Apr. 2019, vol. 294, iss. 16, str. 6294-6305, ilustr. ISSN 0021-9258. DOI: 10.1074/jbc.RA118.006742. [COBISS.SI-ID 34277593]
35. GOLOB URBANC, Anja, STRMŠEK, Žiga, RAJČEVIĆ, Uroš, JERALA, Roman. Design of split superantigen fusion proteins for cancer immunotherapy. V: KISOVEC, Matic (ur.). Book of abstracts = Knjiga povzetkov. 13th Meeting of the Slovenian Biochemical Society with International Participation = 13. srečanje Slovenskega biokemijskega društva z mednarodno udeležbo, Dobrna, 24 - 27 September 2019. Ljubljana: Slovenian Biochemical Society, 2019. Str. 56. ISBN 978-961-93879-8-6. [COBISS.SI-ID 6726938]
36. AUPIČ, Jana, STRMŠEK, Žiga, LAPENTA, Fabio, PAHOVNIK, David, PISANSKI, Tomaž, LIU, Chuan, ERDMANN, Philipp, PLITZKO, Jürgen, JERALA, Roman. Engineering the folding pathway of a modular protein cage for multiple use of building modules. V: PODOBNIK, Marjetka (ur.), ANDERLUH, Gregor (ur.). Recent advances in cryo-em : minisymposium 2019, 6. 9. 2019 : [book of abstracts]. Ljubljana: Department of Molecular Biology and Nanobiotechnology, National Institute of Chemistry, 2019. Str. 9. ISBN 978-961-6104-46-3. [COBISS.SI-ID 6706458]
37. LAPENTA, Fabio, AUPIČ, Jana, STRMŠEK, Žiga, GRADIŠAR, Helena, MELERO DEL RIO, Roberto, JERALA, Roman. Hierarchical self-assembly of a coiled-coil-based bipyramidal protein cage. V: Protein engineering II : from new molecules to new processes. York: Biochemical Society. 2019, [1] str. https://www.eventsforce.net/biochemsoc/frontend/reg/absViewDocumentFE.csp?documentID=2005&eventID=42. [COBISS.SI-ID 40267013]
38. MAJERLE, Andreja, HADŽI, San, AUPIČ, Jana, STRMŠEK, Žiga, LAPENTA, Fabio, SATLER, Tadej, LORIS, Remy, JERALA, Roman. Nanobodies targeting coiled-coil protein origami cages for structure determination and introduction of delivery application. V: KISOVEC, Matic (ur.). Book of abstracts = Knjiga povzetkov. 13th Meeting of the Slovenian Biochemical Society with International Participation = 13. srečanje Slovenskega biokemijskega društva z mednarodno udeležbo, Dobrna, 24 - 27 September 2019. Ljubljana: Slovenian Biochemical Society, 2019. Str. 59. ISBN 978-961-93879-8-6. [COBISS.SI-ID 6727706]
39. AUPIČ, Jana, STRMŠEK, Žiga, LAPENTA, Fabio, PAHOVNIK, David, PISANSKI, Tomaž, JERALA, Roman. Recycling coiled-coil building blocks for easier design of coiled-coil protein origami cages. V: Protein Engineering : University of York, UK, 15th-17th July 2019 : abstracts. Protein Engineering, University of York, UK, 15th-17th July 2019. York: [s. n.], 2019. Str. 6-7. [COBISS.SI-ID 27836931]

2020

40. SUŠJAN, Petra, LAINŠČEK, Duško, STRMŠEK, Žiga, HODNIK, Vesna, ANDERLUH, Gregor, HAFNER BRATKOVIČ, Iva. Inhibition of the NLRP3 inflammasome by peptide inhibitors. V: KOŠNIK, Mitja (ur.). 7th Slovenian Pneumology, Allergology and Immunology Congress : 10th - 12th of December 2020, online : [book of abstracts]. Golnik: Slovenian Respiratory Society, 2020. Str. 37. ISBN 978-961-95041-1-6. https://drive.google.com/file/d/1325ajZ0G4B4NzZpnkAXFRV9SKkFuuL-y/view. [COBISS.SI-ID 44450051]
41. SUŠJAN, Petra, LAINŠČEK, Duško, STRMŠEK, Žiga, HODNIK, Vesna, ANDERLUH, Gregor, HAFNER BRATKOVIČ, Iva. Selective inhibition of NLRP3 inflammasome by designed peptide originating from ASC. The FASEB journal. [Online ed.]. Aug. 2020, vol. 34, iss. 8, str. 11068-11086. ISSN 1530-6860. https://faseb.onlinelibrary.wiley.com/doi/10.1096/fj.201902938RR, DiRROS - Digitalni repozitorij raziskovalnih organizacij Slovenije, DOI: 10.1096/fj.201902938RR. [COBISS.SI-ID 23332355]
42. JERALA, Roman, FINK, Tina, FORSTNERIČ, Vida, MALENŠEK, Špela, AUPIČ, Jana, LAINŠČEK, Duško, BENČINA, Mojca, HAFNER BRATKOVIČ, Iva, MANČEK KEBER, Mateja, PEČAN, Peter, DEKLEVA, Petra, PLAPER, Tjaša, OREHEK, Sara, STRMŠEK, Žiga, ESIH, Hana. Vaccines based on an antigen protein fused to a nanostructuring scaffold : LU102016, 2020-08-26. Luxembourg: Office de la propriété intellectuelle Ministère de lʹÉconomie, 2020. 5 str., ilustr. [COBISS.SI-ID 43483395]

2021

43. AUPIČ, Jana, LAPENTA, Fabio, STRMŠEK, Žiga, JERALA, Roman. Design of a coiled-coil protein origami with controllable self-assembly. V: Molecules of life : towards new horizons : FEBS 2021 : the 45th FEBS Congress : 3-8 July 2021, Ljubljana, Slovenia : virtual : abstracts. [S. l.]: Federation of European Biochemical Societies. 2021, str. [1]. https://2021.febscongress.org/abstract_preview.aspx?idAbstractEnc=4424170094100095098091424170. [COBISS.SI-ID 70618115]
44. AUPIČ, Jana, STRMŠEK, Žiga, LAPENTA, Fabio, PAHOVNIK, David, PISANSKI, Tomaž, DROBNAK, Igor, LJUBETIČ, Ajasja, JERALA, Roman. Designed folding pathway of modular coiled-coil-based proteins. Nature communications. 2021, vol. 12, str. 1-12, ilustr. ISSN 2041-1723. https://doi.org/10.1038/s41467-021-21185-5, Repozitorij Univerze v Novi Gorici - RUNG, DOI: 10.1038/s41467-021-21185-5. [COBISS.SI-ID 51116547]
45. STRMŠEK, Žiga, PAVKO, Neža, AUPIČ, Jana, LAPENTA, Fabio, JERALA, Roman. Functionalization and assembly of coiled-coil protein origami nanostructures using SpyCatcher/SpyTag system. V: 18th Annual Conference Foundations of Nanoscience : 12 - 15 April 2021 : abstract booklet : online event. [S. l.: s. n.], 2021. Str. 105-106. [COBISS.SI-ID 79728387]
46. MAJERLE, Andreja, HADŽI, San, AUPIČ, Jana, SATLER, Tadej, LAPENTA, Fabio, STRMŠEK, Žiga, LAH, Jurij, LORIS, Remy, JERALA, Roman. A nanobody toolbox targeting dimeric coiled-coil modules for functionalization of designed protein origami structures. Proceedings of the National Academy of Sciences of the United States of America. [Online ed.]. 27 Apr. 2021, vol. 118, iss. 17, [article no.] e2021899118, str. 1-9, ilustr. ISSN 1091-6490. https://www.pnas.org/content/118/17/e2021899118, DOI: 10.1073/pnas.2021899118. [COBISS.SI-ID 64113667]
47. LAINŠČEK, Duško, FINK, Tina, FORSTNERIČ, Vida, HAFNER BRATKOVIČ, Iva, OREHEK, Sara, STRMŠEK, Žiga, MANČEK KEBER, Mateja, PEČAN, Peter, ESIH, Hana, MALENŠEK, Špela, AUPIČ, Jana, DEKLEVA, Petra, PLAPER, Tjaša, VIDMAR, Sara, KADUNC POLAJNAR, Lucija, BENČINA, Mojca, OMERSA, Neža, ANDERLUH, Gregor, POJER, Florence, LAU, Kelvin, HACKER, David, CORREIA, Bruno E., PETERHOFF, David, WAGNER, Ralf, BERGANT, Valter, HERRMANN, Alexander, PICHLMAIR, Andreas, JERALA, Roman. A nanoscaffolded spike-RBD vaccine provides protection against SARS-CoV-2 with minimal anti-scaffold response. Vaccines. May 2021, vol. 9, iss. 5, [article no.] 431, str. 1-21. ISSN 2076-393X. https://www.mdpi.com/2076-393X/9/5/431, DOI: 10.3390/vaccines9050431. [COBISS.SI-ID 62539779]
48. QU, Jia-Huan, LEIRS, Karen, ESCUDERO, Remei, STRMŠEK, Žiga, JERALA, Roman, SPASIC, Dragana, LAMMERTYN, Jeroen. Novel regeneration approach for creating reusable FO-SPR probes with NTA surface chemistry. Nanomaterials. [Online ed.]. Jan. 2021, vol. 11, iss. 1, str. 1-12, ilustr. ISSN 2079-4991. https://www.mdpi.com/2079-4991/11/1/186, DOI: 10.3390/nano11010186. [COBISS.SI-ID 89299971]
49. LAPENTA, Fabio, AUPIČ, Jana, STRMŠEK, Žiga, JERALA, Roman, et al. Oligomeric self-assembly of a coiled-coil-based bipyramidal protein cage. V: Molecules of life : towards new horizons : FEBS 2021 : the 45th FEBS Congress : 3-8 July 2021, Ljubljana, Slovenia : virtual : abstracts. [S. l.]: Federation of European Biochemical Societies. 2021, 1 str. https://2021.febscongress.org/abstract_preview.aspx?idAbstractEnc=4424170094100095098100424170, Repozitorij Univerze v Novi Gorici - RUNG. [COBISS.SI-ID 70115331]
50. STRMŠEK, Žiga. Predstavitev proteinskih domen na ogrodju proteinskega origamija iz ovitih vijačnic v obliki tetraedra : doktorska disertacija = Presentation of protein domains on the scaffold of coiled-coil protein origami tetrahedron : doctoral dissertation. Ljubljana: [Ž. Strmšek], 2021. 113 str., 12 str. pril., ilustr. https://repozitorij.uni-lj.si/IzpisGradiva.php?id=129192&lang=slv, Repozitorij Univerze v Ljubljani – RUL, http://www.dlib.si/details/URN:NBN:SI:doc-WAV9T6V7. [COBISS.SI-ID 131519747]
51. LAPENTA, Fabio, AUPIČ, Jana, VEZZOLI, Marco, STRMŠEK, Žiga, DA VELA, Stefano, SVERGUN, Dmitrii Ivanovich, CARAZO, José María, MELERO, Roberto, JERALA, Roman. Self-assembly and regulation of protein cages from pre-organised coiled-coil modules. Nature communications. 2021, vol. 12, str. 1-12, ilustr. ISSN 2041-1723. https://doi.org/10.1038/s41467-021-21184-6, Repozitorij Univerze v Novi Gorici - RUNG, DOI: 10.1038/s41467-021-21184-6. [COBISS.SI-ID 51114755]

2022

52. LEBEN ZUPET, Katja, STRMŠEK, Žiga, LEBAR, Tina, VERBIČ, Anže, DRAGOVAN, Matej, OMERSA, Neža, ANDERLUH, Gregor, JERALA, Roman. Binding of the transcription activator-like effector augments transcriptional regulation by another transcription factor. Nucleic acids research. 7 Jun. 2022, vol. 50, iss. 11, str. 6562–6574, ilustr. ISSN 0305-1048. https://academic.oup.com/nar/article/50/11/6562/6603662, DOI: 10.1093/nar/gkac454. [COBISS.SI-ID 120903171]
53. DAVE, Dhwanit, MASSARANO, Tlalit, KATZIR, Itai, STRMŠEK, Žiga, LJUBETIČ, Ajasja, SEMENTA, Deborah. EMBO beyond biology : connecting peptide, protein, and DNA design with systems chemistry. Chem. 10 Feb. 2022, vol. 8, iss. 2, str. 319-324. ISSN 2451-9294. DOI: 10.1016/j.chempr.2021.12.021. [COBISS.SI-ID 100264451]
54. AUPIČ, Jana, LAPENTA, Fabio, STRMŠEK, Žiga, MERLJAK, Estera, PLAPER, Tjaša, JERALA, Roman. Metal ion-regulated assembly of designed modular protein cages. Science advances. 17 Jun. 2022, vol. 8, iss. 24, str. 1-12. ISSN 2375-2548. https://www.science.org/doi/10.1126/sciadv.abm8243, DOI: 10.1126/sciadv.abm8243. [COBISS.SI-ID 114422019]
55. ŽIVIČ, Zala, STRMŠEK, Žiga, NOVINEC, Marko, LAH, Jurij, HADŽI, San. Stalk domain of SARS-CoV-2 spike protein and its structural polymorphism. V: PODOBNIK, Marjetka (ur.). "Give Structural Biology to Young People" : minisymposium 2022, 28. 09. 2022 : [book of abstracts]. Electronic version. Ljubljana: Department of Molecular Biology and Nanobiotechnology, National Institute of Chemistry, 2022. Str. 11. ISBN 978-961-6104-80-7. https://www.ki.si/fileadmin/user_upload/datoteke-D11/Dogodki_in_mini_simpozij/MS2022/MS2022.pdf. [COBISS.SI-ID 125409795]
56. ŽIVIČ, Zala, STRMŠEK, Žiga, NOVINEC, Marko, LAH, Jurij, HADŽI, San. Structural polymorphism of coiled-coils from the stalk domain of SARS-CoV-2 spike protein. The FASEB journal. Mar. 2022, vol. 36, iss. 3, [article no.] e22199, str. 1-11, ilustr. ISSN 0892-6638. https://faseb.onlinelibrary.wiley.com/doi/10.1096/fj.202101670R, Repozitorij Univerze v Ljubljani – RUL, DOI: 10.1096/fj.202101670R. [COBISS.SI-ID 97817859]
57. STRMŠEK, Žiga, TUŠAR, Anja, PAVKO, Neža, AUPIČ, Jana, LAPENTA, Fabio, JERALA, Roman. Using small-angle X-ray scatering to determine the shape of decorated coiled-coil protein origami. V: PODOBNIK, Marjetka (ur.). "Give Structural Biology to Young People" : minisymposium 2022, 28. 09. 2022 : [book of abstracts]. Electronic version. Ljubljana: Department of Molecular Biology and Nanobiotechnology, National Institute of Chemistry, 2022. Str. 7. ISBN 978-961-6104-80-7. https://www.ki.si/fileadmin/user_upload/datoteke-D11/Dogodki_in_mini_simpozij/MS2022/MS2022.pdf. [COBISS.SI-ID 125279747]

2023

58. STRMŠEK, Žiga, SNOJ, Jaka, SATLER, Tadej, JERALA, Roman. Coiled-coil protein origami : design, isolation, and characterization. V: UENO, Takafumi (ur.). Protein cages : design, structure, and applications. New York: Humana Press, cop. 2023. Str. 3-48, ilustr. Methods in molecular biology, 2671. ISBN 978-1-0716-3222-2. ISSN 1940-6029. https://link.springer.com/protocol/10.1007/978-1-0716-3222-2_1. [COBISS.SI-ID 173004547]

2025

59. VIDMAR, Sara, ŠMIDLEHNER, Tamara, AUPIČ, Jana, STRMŠEK, Žiga, LJUBETIČ, Ajasja, XIAO, Fei, HU, Guang, LIU, Chuan, BECK, Florian, ERDMANN, Philipp S., JERALA, Roman. Beyond dimerization : harnessing tetrameric coiled-coils for nanostructure assembly. Angewandte Chemie : international edition. Mar. 17, 2025, vol. 64, iss. 12, [article no.] e202422075, str. 1-8. ISSN 1521-3773. https://onlinelibrary.wiley.com/doi/10.1002/anie.202422075, Repozitorij Univerze v Ljubljani – RUL, DiRROS - Digitalni repozitorij raziskovalnih organizacij Slovenije, DOI: 10.1002/anie.202422075. [COBISS.SI-ID 221895427]
60. ZHOU, Weijun, STRMŠEK, Žiga, SNOJ, Jaka, ŠKARABOT, Miha, JERALA, Roman. Programmable protein-DNA composite nanostructures : from nanostructure construction to protein-induced micro-scale material self-assembly and functionalization. Small. 2025, vol. 21, iss. 30, [article no.] 2502060, str. 1-12, ilustr. ISSN 1613-6829. https://onlinelibrary.wiley.com/doi/10.1002/smll.202502060, DiRROS - Digitalni repozitorij raziskovalnih organizacij Slovenije, DOI: 10.1002/smll.202502060. [COBISS.SI-ID 240986371]
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