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Kaja Blagotinšek Cokan

Osebna bibliografija za obdobje 2011-2026

2011

1. KUBALE, Valentina, BLAGOTINŠEK COKAN, Kaja, POGAČNIK, Azra, VRECL, Milka. Vloga tretje znotrajcelične zanke pri regulaciji dolge oblike dopaminskega receptotja tipa 2 (D2L-R). V: MAJDIČ, Gregor (ur.). Program in zbornik referatov. Slovenian veterinary research. Ljubljana: Veterinarska fakulteta, 2011. Vol. 48, suppl. 13, str. 362-365. Slovenian veterinary research, Supplement, 13. ISBN 978-961-6199-54-4. ISSN 1580-4003. [COBISS.SI-ID 3445626]

2012

2. BLAGOTINŠEK COKAN, Kaja. Funkcionalni pomen območja v tretji znotrajcelični zanki za specifičnost delovanja dolge oblike dopaminskega receptorja tipa 2(D2L-R) = The functional importance of conserved motif in the third intracellular loop of the specifity of the long form of dopamine receptor type 2 (D2L-R). Ljubljana: [Kaja Blagotinšek], 2012. 60 f., ilustr., graf. prikazi. [COBISS.SI-ID 3614330]
3. BLAGOTINŠEK COKAN, Kaja, KUBALE, Valentina, POGAČNIK, Azra, VRECL, Milka. Identification of conserved motif in the third intracellular loop in dopamine receptor type 2 (D2L-R) related to intracellular retention of D2L-R. V: HUDLER, Petra (ur.), VIDETIČ PASKA, Alja (ur.), JUVAN, Peter (ur.). Molekularna medicina in biotehnologija = Molecular medicine and biotechnology : book of abstracts. Simpozij z mednarodno udele bo ob 40. obletnici In tituta za biokemijo in 20. obletnici Medicinskega centra za molekularno biologijo = International Symposium at 40th Anniversary of Institute of Biochemistry and_ 20th Anniversary of Medical Centre for Molecular Biology, Ljubljana, 27-29 June 2012. Ljubljana: Inštitut za biokemijo, Medicinska fakulteta: = Institute of Biochemistry, Faculty of Medicine, 2012. Str. 93. ISBN 978-961-267-050-4. [COBISS.SI-ID 3555450]

2013

4. BLAGOTINŠEK COKAN, Kaja, VRECL, Milka, KUBALE, Valentina. Funkcionalni pomen območja v tretji znotrajcelični zanki za specifičnost delovanja dolge oblike dopaminskega receptorja tipa 2(D2L-R). Ructus. 2013, št. 32, str. 14. [COBISS.SI-ID 3700602]
5. KUBALE, Valentina, BLAGOTINŠEK COKAN, Kaja, VRECL, Milka. The functional importance of conserved motif in the third intracellular loop of the long form of dopamine receptor type 2 (D2L-R). V: PETAN, Toni (ur.), ŠPES, Aleš (ur.). Book of abstracts. 10th Meeting of the Slovenian Biochemical Society with International Participation, Ljubljana, Slovenia, September 15-18, 2013. Ljubljana: Slovenian Biochemical Society, 2013. Str. 30. ISBN 978-961-91651-8-8. [COBISS.SI-ID 3724666]

2014

6. BLAGOTINŠEK COKAN, Kaja, GRUDEN, Eva, VRECL, Milka, MOHORIČ, Luka, MAJDIČ, Gregor, ČEH, Katerina, KUBALE, Valentina. Raziskave bioenakovrednosti mezenhimskih matičnih celic samcev in samic psov s pomočjo metode BRET - razlike v celičnem sporočanju : predavanje na konferenci "Dnevi biofizike", 4. - 5. september 2014, Zreče. Ljubljana: Institut Jožef Stefan, Laboratorij za biofiziko, 2014. [COBISS.SI-ID 3867770]

2016

7. BLAGOTINŠEK COKAN, Kaja, PERŠE, Martina, JERUC, Jera, URLEP, Žiga, LORBEK, Gregor, JUVAN, Peter, ROZMAN, Damjana. Chronic liver inflammation of Cyp51 knockout mice represents an important promoter of hepatocarcinogenesis. V: CVITANOVIĆ TOMAŠ, Tanja (ur.), et al. Everything you always wanted to know about personalised medicine in clinical care. [S. l.: s. n], 2016. Str. 107-108. https://www.easym.eu/lw_resource/datapool/_items/item_59/easym_2016_programme_brochure_protected.pdf. [COBISS.SI-ID 33035225]
8. KUBALE, Valentina, BLAGOTINŠEK COKAN, Kaja, LARSEN, Jane N., EIDNE, Karin A, VRECL, Milka. The conserved arginine cluster in the insert of the third cytoplasmic loop of the long form of the D2 dopamine receptor (D2L-R) acts as an intracellular retention signal. International journal of molecular sciences. 2016, vol. 17, no. 7, str. 1-16, št. članka 1152. ISSN 1422-0067. Repozitorij Univerze v Ljubljani – RUL, DOI: 10.3390/ijms17071152. [COBISS.SI-ID 4174970]
9. ROZMAN, Damjana, LORBEK, Gregor, KOVAČ, Urša, URLEP, Žiga, BLAGOTINŠEK COKAN, Kaja, PERŠE, Martina, JERUC, Jera. CYP51 liver knockout mice - a new model of sex- dependent progression to nash and hepatocellular carcinoma. Journal of hepatology. Supplement. 2014, vol. 64, iss. 2, suppl., str. s560-s561. ISSN 0169-5185. http://www.journal-of-hepatology.eu/article/S0168-8278(16)01012-6/pdf. [COBISS.SI-ID 33062617]
10. BLAGOTINŠEK COKAN, Kaja, LORBEK, Gregor, URLEP, Žiga, PERŠE, Martina, JERUC, Jera, JUVAN, Peter, ROZMAN, Damjana. Identification of molecular and metabolic differences between NASH and HCC of CYP51 knockout mice. V: URLEP, Žiga (ur.), JUVAN, Peter (ur.). Book of abstracts. Elixir-si Launch & 11th CFGBC Symposium Data for Life, Ljubljana, September 20 - September 21, 2016. Ljubljana: Faculty of Medicine, 2016. Str. 28. ISBN 978-961-267-113-6. http://cfgbc.mf.uni-lj.si/2016data4life/abstracts/Book_of_Abstracts.pdf. [COBISS.SI-ID 32829913]
11. BLAGOTINŠEK COKAN, Kaja, GRUDEN, Eva, VRECL, Milka, MOHORIČ, Luka, MAJDIČ, Gregor, ČEH, Katerina, KUBALE, Valentina. Spolno specifično znotrajcelično sporočanje v matičnih celicah samcev in samic psov po aktivaciji inzulinskega receptorja s pomočjo metode BRET2. V: MAJDIČ, Gregor (ur.). 6. Slovenski veterinarski kongres 2016 = 6th Slovenian Veterinary Congress 2016 : Portorož, 2. -3. December 2016. 6. slovenski veterinarski kongres, Portorož, 2. -3. december 2016. Ljubljana: Veterinarska fakulteta, 2016. Vol. 53, suppl. 17, str. 223-228, graf. prikaz. Slovenian veterinary research, Vol. 53, suppl. 17, 2016. ISSN 1580-4003. http://www.dlib.si/details/URN:NBN:SI:doc-1O81PDA5. [COBISS.SI-ID 4251258]

2017

12. BLAGOTINŠEK COKAN, Kaja, PERŠE, Martina, JERUC, Jera, LORBEK, Gregor, URLEP, Žiga, ROZMAN, Damjana. Blocking cholesterol synthesis in the liver promotes hepatocarcinogenesis in the mouse model HCyp51-/-. V: Abstracts. Systems Medicine Conference in Slovenia National Awareness Event 8th June 8th 2017 & 12th CFGBC Symposium - June 9th 2017, and "Systems Medicine" Workshop. Ljubljana: Faculty of Medicine, 2017. http://cfgbc.mf.uni-lj.si/2017eracosysmed/abstracts/abstractP_kBlagotinsek_01.html. [COBISS.SI-ID 33926361]
13. ROZMAN, Damjana, BLAGOTINŠEK COKAN, Kaja, PERŠE, Martina, JERUC, Jera, LORBEK, Gregor, URLEP, Žiga, PROSENC ZMRZLJAK, Uršula. Blocking hepatic Cyp51 from cholesterol synthesis promotes hepatocarcinogenesis. V: Biochemistry, biophysics, biotechnology : Delegate book / program and abstracts. [S. l.: s. n., 2017]. Str. 90. [COBISS.SI-ID 33560793]
projekt: financer: ARRS
14. HVALA, Staš, PUŠNIK, Žiga, REJC, Živa, PROSENC ZMRZLJAK, Uršula, BLAGOTINŠEK COKAN, Kaja, URLEP, Žiga, NADIŽAR, Nejc, MOŠKON, Stane, ROZMAN, Damjana, MOŠKON, Miha. Computational support for management of animal samples. V: Abstracts. Systems Medicine Conference in Slovenia National Awareness Event 8th June 8th 2017 & 12th CFGBC Symposium - June 9th 2017, and "Systems Medicine" Workshop. Ljubljana: Faculty of Medicine, 2017. Str. [1]. http://cfgbc.mf.uni-lj.si/2017eracosysmed/abstracts/abstractP_zRejc_01.html. [COBISS.SI-ID 1537663427]
15. HVALA, Staš, PUŠNIK, Žiga, REJC, Živa, PROSENC ZMRZLJAK, Uršula, BLAGOTINŠEK COKAN, Kaja, URLEP, Žiga, NADIŽAR, Nejc, MOŠKON, Stane, ROZMAN, Damjana, MOŠKON, Miha. Computational support for management of animal samples in research laboratories. V: GORIČAR, Katja (ur.), HUDLER, Petra (ur.). Book of abstracts = Zbornik povzetkov. 12th Meeting of the Slovenian Biochemical Society with International Participation = 12. srečanje Slovenskega biokemijskega društva z mednarodno udeležbo, Bled 20 - 23 september 2017. Ljubljana: Slovenian Biochemical Society, 2017. Str. 108. ISBN 978-961-93879-4-8. [COBISS.SI-ID 1537557955]
16. HVALA, Staš, PUŠNIK, Žiga, REJC, Živa, PROSENC ZMRZLJAK, Uršula, BLAGOTINŠEK COKAN, Kaja, URLEP, Žiga, NADIŽAR, Nejc, MOŠKON, Stane, ROZMAN, Damjana, MOŠKON, Miha. Computational support for management, tracking and analysis of animal samples. V: KRANJC BREZAR, Simona (ur.), MAJDIČ, Gregor (ur.). Proceedings. 3rd Congress of the SLAS and 1st joint SLAS - CroLASA meeting, Ljubljana, 15-16 June 2017. 1st ed. Ljubljana: Veterinarska fakulteta, 2017. Str. 55. Slovenian veterinary research, Vol. 54, suppl. 18, 2017. ISSN 1580-4003. [COBISS.SI-ID 1537446083]
17. BLAGOTINŠEK COKAN, Kaja, PERŠE, Martina, JERUC, Jera, LORBEK, Gregor, URLEP, Žiga, PROSENC ZMRZLJAK, Uršula, ROZMAN, Damjana. The hepatocyte specific Cyp51 knock-out mouse model HCyp51 doxy+/doxy+ : a better choice to investigate NA(F) induced HCC. V: KRANJC BREZAR, Simona (ur.), MAJDIČ, Gregor (ur.). Proceedings. 3rd Congress of the SLAS and 1st joint SLAS - CroLASA meeting, Ljubljana, 15-16 June 2017. 1st ed. Ljubljana: Veterinarska fakulteta, 2017. Str. 44. Slovenian veterinary research, Vol. 54, suppl. 18, 2017. ISSN 1580-4003. [COBISS.SI-ID 33325273]
18. HVALA, Staš, PUŠNIK, Žiga, REJC, Živa, PROSENC ZMRZLJAK, Uršula, BLAGOTINŠEK COKAN, Kaja, URLEP, Žiga, NADIŽAR, Nejc, ROZMAN, Damjana, MOŠKON, Miha. InfoGen : informacijski sistem za sledenje, analizo in vodenje vzorcev na področju funkcijske genomike. V: ŽEMVA, Andrej (ur.), TROST, Andrej (ur.). Zbornik šestindvajsete mednarodne Elektrotehniške in računalniške konference ERK 2017 = Proceedings of the Twenty-sixth International Electrotechnical and Computer Science Conference ERK 2017. ERK 2017, Portorož, Slovenija, 25. - 26. september 2017. Ljubljana: IEEE, Slovenska sekcija IEEE, 2017. Str. 524-527, ilustr. Zbornik ... Elektrotehniške in računalniške konference ERK ..., 26. ISSN 2591-0442. http://erk.fe.uni-lj.si/2017/papers/hvala(infogen__informacijski).pdf. [COBISS.SI-ID 1537556163]
19. BLAGOTINŠEK COKAN, Kaja, PERŠE, Martina, JERUC, Jera, LORBEK, Gregor, URLEP, Žiga, PROSENC ZMRZLJAK, Uršula, ROZMAN, Damjana. The NA(F)LD induced hepatocellular carcinoma in liver specific Cyp51 knock-out mouse models. V: GORIČAR, Katja (ur.), HUDLER, Petra (ur.). Book of abstracts = Zbornik povzetkov. 12th Meeting of the Slovenian Biochemical Society with International Participation = 12. srečanje Slovenskega biokemijskega društva z mednarodno udeležbo, Bled 20 - 23 september 2017. Ljubljana: Slovenian Biochemical Society, 2017. Str. 135. ISBN 978-961-93879-4-8. [COBISS.SI-ID 33436889]
20. BLAGOTINŠEK COKAN, Kaja, ROZMAN, Damjana. Targeting signalling pathways in hepatocellular carcinoma. Current pharmaceutical design. 2017, iss. 1, vol. 23, str. 170-175. ISSN 1381-6128. DOI: 10.2174/1381612822666161006160005. [COBISS.SI-ID 32864217]

2018

21. BLAGOTINŠEK COKAN, Kaja, JERUC, Jera, PERŠE, Martina, LORBEK, Gregor, URLEP, Žiga, JUVAN, Peter, NADIŽAR, Nejc, PROSENC ZMRZLJAK, Uršula, ROZMAN, Damjana. Disrupted cholesterol synthesis leads to female prevalent hepatocellular carcinoma in transgenic mice. Journal of hepatology. 2018, vol. 68, suppl. 4, str. s686. ISSN 0168-8278. https://www.journal-of-hepatology.eu/article/S0168-8278(18)31630-1/fulltext. [COBISS.SI-ID 33748185]
22. BLAGOTINŠEK COKAN, Kaja, PERŠE, Martina, JERUC, Jera, LORBEK, Gregor, URLEP, Žiga, JUVAN, Peter, NADIŽAR, Nejc, ROZMAN, Damjana. Non-alcoholic fatty liver disease induced hepatocellular carcinoma: major genetic risk factors in a mouse model HCyp51-/- : [poster]. V: Taste of genomics : abstracts. 13th CFGBC Symposium, Ljubljana, 20-21 June 2018. Ljubljana: Faculty of Medicine, 2018. http://cfgbc.mf.uni-lj.si/events/seminars/2018cfgbcsym13/abstracts/posterAbstract_KBCokan_01.html. [COBISS.SI-ID 33823705]
23. ROZMAN, Damjana, BLAGOTINŠEK COKAN, Kaja, CVITANOVIĆ TOMAŠ, Tanja, URLEP, Žiga, JUVAN, Peter, MOŠKON, Miha, MRAZ, Miha. Sexual aspects in hepatic metabolism and its abnormalities : a systems approach. V: SZÜTS, Dávis (ur.), BUDAY, László (ur.). FEBS3+ Conference : [from molecules to living systems] : final programme & book of abstracts : 2-5 September 2018, Siófok, Hungary. Veszprém: OOK-Press, 2018. Str. 98. ISBN 978-615-5270-47-5. [COBISS.SI-ID 33947609]
24. BLAGOTINŠEK COKAN, Kaja, PERŠE, Martina, JERUC, Jera, PROSENC ZMRZLJAK, Uršula, JUVAN, Peter, ROZMAN, Damjana. Transgenic mice models and alternative approach for the study of non-alcoholic fatty liver disease and hepatacellular carcinoma. V: ERHARDT, Julija (ur.). Pokusne životinje u znanstvenim istraživanjima = Laboratory animals in scientific research. 3. znanstveno-stručni simpozij Hrvatskog društva za znanost o laboratorijskim životinjama i 2. zajednički skup CroLASA-e i SLAS-a s međunarodnim sudjelovanjem,. Zagreb: Hrvatsko društvo za znanost o laboratorijskim životinjama, 2018. Str. 15. ISBN 978-953-59521-1-4. [COBISS.SI-ID 34026713]
25. BLAGOTINŠEK COKAN, Kaja, PERŠE, Martina, JERUC, Jera, LORBEK, Gregor, URLEP, Žiga, JUVAN, Peter, NADIŽAR, Nejc, ROZMAN, Damjana. Uporabnost mišjih modelov za študije hepatokarcinogeneze sprožene z blokirano sintezo holesterola zaradi izbitja gena Cyp51. V: KRANJC BREZAR, Simona (ur.), MAJDIČ, Gregor (ur.). Zbornik prispevkov. 4.kongres Slovenskega društva za laboratorijske živali, Domžale, 2018. Ljubljana: Veterinarska fakulteta, 2018. Vol. 55, suppl. 19, str. 14. Slovenian veterinary research, Vol. 55, suppl. 19, 2018. ISSN 1580-4003. [COBISS.SI-ID 33823193]

2019

26. BLAGOTINŠEK COKAN, Kaja, PERŠE, Martina, JERUC, Jera, LORBEK, Gregor, URLEP, Žiga, JUVAN, Peter, NADIŽAR, Nejc, ROZMAN, Damjana. Hepatocelullar carcinoma : the consequence of the disrupted cholesterol synthesis in transgenic mice. V: EASyM Europe 2018 : abstracts. New Rochelle (NY): Mary Ann Liebert, 2019. Str. a-16. Systems medicine, #vol. #2, 1. ISSN 2573-3370. https://www.liebertpub.com/doi/pdf/10.1089/sysm.2018.29003.abstracts. [COBISS.SI-ID 34272985]
27. BLAGOTINŠEK COKAN, Kaja, PERŠE, Martina, JERUC, Jera, LORBEK, Gregor, SKUBIC, Cene, JUVAN, Peter, ROZMAN, Damjana. Molekularno ovrednotenje hepatokarcinogeneze z uporabo transgenih mišjih modelov in alternativnega pristopa = Molecular charcterization of hepatocarciongenesis using transgenic mice models and alternative approach. V: MAJDIČ, Gregor (ur.). Slovenski veterinarski kongres : [Portorož, Slovenia, 3 - 6 April 2019]. 7. slovenski veterinarski kongres, Portorož, 3 - 6 April, 2019. Ljubljana: Veterinarska fakulteta, 2019. Str. 249-250. Slovenian veterinary research, Vol. 56, suppl. 23, 2019. ISSN 1580-4003. [COBISS.SI-ID 34279129]

2020

28. BLAGOTINŠEK COKAN, Kaja, URLEP, Žiga, LORBEK, Gregor, MATZ-SOJA, Madlen, SKUBIC, Cene, PERŠE, Martina, JERUC, Jera, JUVAN, Peter, REŽEN, Tadeja, ROZMAN, Damjana. Chronic disruption of the late cholesterol synthesis leads to female-prevalent liver cancer. Cancers. 2020, vol. 12, iss. 11, str. 1-24, ilustr. ISSN 2072-6694. https://www.mdpi.com/2072-6694/12/11/3302, Repozitorij Univerze v Ljubljani – RUL, DOI: 10.3390/cancers12113302. [COBISS.SI-ID 36485123]
29. BLAGOTINŠEK COKAN, Kaja, MAVRI, Maša, RUTLAND, Catrin, GLISIĆ, Sanja, SENCANSKI, Milan, VRECL, Milka, KUBALE, Valentina. Critical impact of different conserved endoplasmic retention mofits and dopamine receptor interacting proteins (DRIPs) on intracellular localization and trafficking of the D2 dopamine receptor (D2-R) isoforms. Biomolecules. 2020, vol. 10, no. 10, str. 1-18, ilustr. ISSN 2218-273X. https://www.mdpi.com/2218-273X/10/10/1355#, Repozitorij Univerze v Ljubljani – RUL, DOI: 10.3390/biom10101355. [COBISS.SI-ID 29478403]
30. MORGAN, Edward T., SKUBIC, Cene, LEE, Choon-myung, BLAGOTINŠEK COKAN, Kaja, ROZMAN, Damjana. Regulation of cytochrome P450 enzyme activity and expression by nitric oxide in the context of inflammatory disease. Drug metabolism reviews. Nov. 2020, vol. 52, iss. 4, str. 455-471, ilustr. ISSN 0360-2532. https://www.tandfonline.com/doi/full/10.1080/03602532.2020.1817061, DOI: 10.1080/03602532.2020.181706. [COBISS.SI-ID 28358403]
projekt: J1-9176; financer: Slovenian Research Agency
projekt: financer: National Institutes of Health Institute of General Medical Science
31. BLAGOTINŠEK COKAN, Kaja, JUVAN, Peter, MOŠKON, Miha, URLEP, Žiga, MRAZ, Miha, KONG, X.Y., ESKILD, W., ROZMAN, Damjana, REŽEN, Tadeja. Transcriptional and metabolic rearrangements in liver fibrosis. V: Abstracts : virtual symposium. 15th CFGBC Symposium, 15th June 2020, Ljubljana. Ljubljana: Faculty of Medicine, 2020. http://cfgbc.mf.uni-lj.si/events-2020cfgbcsym15/events-2020cfgbcsym15-lectureabstracts/. [COBISS.SI-ID 19697923]

2021

32. BLAGOTINŠEK COKAN, Kaja, URLEP, Žiga, LORBEK, Gregor, MATZ-SOJA, Madlen, SKUBIC, Cene, PERŠE, Martina, JERUC, Jera, JUVAN, Peter, REŽEN, Tadeja, ROZMAN, Damjana. Chronic disruption of the late cholesterol synthesis leads to female-prevalent liver cancer. V: Digital Liver Cancer Summit 2021 : abstract book : 5-6 Februar 2021. Geneva: EASL, 2021. Str. 98. https://easl.eu/wp-content/uploads/2021/01/Digital-Liver-Cancer-Summit-2021-Abstract-book.pdf. [COBISS.SI-ID 51467779]
33. BLAGOTINŠEK COKAN, Kaja, URLEP, Žiga, MOŠKON, Miha, MRAZ, Miha, KONG, Xiang Y., ESKILD, Winnie, ROZMAN, Damjana, JUVAN, Peter, REŽEN, Tadeja. Common transcriptional program of liver fibrosis in mouse genetic models and humans. International journal of molecular sciences. 2021, vol. 22, iss. 2, str. 1-21, ilustr. ISSN 1422-0067. https://www.mdpi.com/1422-0067/22/2/832, Repozitorij Univerze v Ljubljani – RUL, DOI: 10.3390/ijms22020832. [COBISS.SI-ID 47324419]
projekt: J1-9176; financer: Slovenian Research Agency
projekt: financer: Norwegian Research Council
34. BLAGOTINŠEK COKAN, Kaja, PERŠE, Martina, JERUC, Jera, LORBEK, Gregor, URLEP, Žiga, SKUBIC, Cene, JUVAN, Peter, REŽEN, Tadeja, MOŠKON, Miha, MRAZ, Miha, ESKILD, W., MATZ-SOJA, Madlen, SPINDELBÖCK, W., ROZMAN, Damjana. The molecular crosstalk between diminished cholesterol synthesis and chronic liver disease in mice and humans. FEBS open bio. 2021, vol. 11, suppl. 1, str. 502-503. ISSN 2211-5463. https://febs.onlinelibrary.wiley.com/doi/epdf/10.1002/2211-5463.13205. [COBISS.SI-ID 70069763]
35. BLAGOTINŠEK COKAN, Kaja. Razvoj hepatocelularnega karcinoma pri miših kot posledica prekinjene sinteze holesterola zaradi izbitja gena CYP51 v jetrih : doktorska disertacija = Hepatocellular carcinoma development in mice as a consequence of blocked cholesterol synthesis due to the CYP51 liver conditional knockout : doctoral dissertation. Ljubljana: [K. Blagotinšek Cokan], 2021. XVII f., 155 str., ilustr. https://repozitorij.uni-lj.si/IzpisGradiva.php?id=125619&lang=slv, Repozitorij Univerze v Ljubljani – RUL, http://www.dlib.si/details/URN:NBN:SI:doc-HGHYAVRJ. [COBISS.SI-ID 58909443]
36. HOCHMUTH, Luise, KÖRNER, Christiane, OTT, Fritzi, VOLKE, Daniela, BLAGOTINŠEK COKAN, Kaja, JUVAN, Peter, BROSCH, Mario, HOFMANN, Ute, HOFFMANN, Ralf, ROZMAN, Damjana, et al. Sex-dependent dynamics of metabolism in primary mouse hepatocytes. Archives of toxicology. 2021, vol. 95, str. 3001-3013, ilustr. ISSN 0340-5761. https://link.springer.com/article/10.1007/s00204-021-03118-9, DOI: 10.1007/s00204-021-03118-9. [COBISS.SI-ID 70075907]
37. SPORMANN, Luise, OTT, F, VOLKE, D, BLAGOTINŠEK COKAN, Kaja, JUVAN, Peter, BROSCH, M, HOFMANN, U, HOFFMANN, Rasmus, ROZMAN, Damjana, BERG, T, MATZ-SOJA, Madlen. The sexual dimorphism of primary murine hepatocytes changes during cultivation. Zeitschrift für Gastroenterologie. Jan. 2021, vol. 59, iss. 1, str. e33. ISSN 1439-7803. https://www.thieme-connect.de/products/ejournals/conferencepdf/075776/10.1055/s-00000094.pdf, DOI: 10.1055/s-0040-1722035. [COBISS.SI-ID 55762435]
38. BLAGOTINŠEK COKAN, Kaja, NASSIB, Petra, SKUBIC, Cene, PERŠE, Martina, WECHTERSBACH, Karmen, KOJC, Nika, JERUC, Jera, JARC JOVIČIĆ, Eva, PETAN, Toni, DEBELJAK, Željko, HEFFER, Marija, MATZ-SOJA, Madlen, ROZMAN, Damjana. The sterol crystallization and lipid droplets biogenesis in dysregulated cholesterol synthesis are incidental to metabolic associated liver disease progression in mice. V: Abstracts : virtual symposium. 16th CFGBC Symposium, 17th June 2021, Ljubljana. Ljubljana: Faculty of Medicine, 2021. http://cfgbc.mf.uni-lj.si/wp-content/uploads/2021cfgbcsym16_abstracts.pdf. [COBISS.SI-ID 67554307]

2022

39. BLAGOTINŠEK COKAN, Kaja, PERŠE, Martina. Communication with scientists and timed-mating rodent management can help reduce surplus animals : our experience. Laboratory animals. 2022, vol. 56, suppl. 1, str. 133-134. ISSN 1758-1117. https://journals.sagepub.com/doi/pdf/10.1177/00236772221103950, DOI: 10.1177/00236772221103950. [COBISS.SI-ID 114726147]
40. SKUBIC, Cene, KOČAR, Eva, NASSIB, Petra, BLAGOTINŠEK COKAN, Kaja, VOVK, Irena, KRIŽMAN, Mitja, ROZMAN, Damjana. LC-APCI-MS method for studying sterol synthesis intermediates in cell and mouse models and clinical samples. V: VOVK, Irena (ur.), GLAVNIK, Vesna (ur.), BENSA, Maja (ur.). 26th International Symposium on Separation Sciences : 28th June - 1st July, 2022, Ljubljana, Slovenia : book of abstracts. Ljubljana: National Institute of Chemistry, 2022. Str. 57. ISBN 978-961-6104-78-4. [COBISS.SI-ID 115284227]
41. BLAGOTINŠEK COKAN, Kaja, HANCOCK, John M., SPINDELBÖCK, Walter, REŽEN, Tadeja, JUVAN, Peter, ROZMAN, Damjana (avtor, korespondenčni avtor). Matching mouse models to specific human liver disease states by comparative functional genomics of mouse and human datasets. Biochimica et biophysica acta. Gene regulatory mechanisms. 2022, vol. 1865, iss. 1, str. [1]-9, ilustr. ISSN 1876-4320. https://www.sciencedirect.com/science/article/pii/S1874939921001036, https://www.mdpi.com/2077-0383/10/24/5777, DOI: 10.1016/j.bbagrm.2021.194785. [COBISS.SI-ID 92233987]
42. BLAGOTINŠEK COKAN, Kaja, PERŠE, Martina, HANCOCK, John M., SPINDELBÖCK, Walter, REŽEN, Tadeja, JUVAN, Peter, ROZMAN, Damjana. Translation of mouse model genetic signatures to human hepatocarcinogenesis. V: NADIŽAR, Nejc (ur.). 17th CFGBC Symposium : book of abstracts : Hybrid Symposium Slovenia, 6th June 2022. Electronic version. Ljubljana: Faculty of Medicine, 2022. Str. 25. http://cfgbc.mf.uni-lj.si/wp-content/uploads/bookofabstracts_2022cfgbcsym17.pdf. [COBISS.SI-ID 111208451]

2023

43. ROZMAN, Damjana, WALAKIRA, Andrew, SKUBIC, Cene, NADIŽAR, Nejc, REŽEN, Tadeja, BLAGOTINŠEK COKAN, Kaja, KOČAR, Eva, MRAZ, Miha, MOŠKON, Miha. Unraveling potential biomarkers of metabolism associated liver disease and hepatocellular carcinoma : oral presentation at 2023 Joint Meeting of the 23rd International Conference on Cytochrome P450 and the 38th Annual Meeting of the Japanese Society for the Study of Xenobiotics in Shizuoka, September 25th - 29th, 2023, Shizuoka, Japan. [COBISS.SI-ID 203610115]
44. ROZMAN, Damjana, WALAKIRA, Andrew, SKUBIC, Cene, NADIŽAR, Nejc, REŽEN, Tadeja, BLAGOTINŠEK COKAN, Kaja, KOČAR, Eva, MRAZ, Miha, MOŠKON, Miha. Unraveling potential biomarkers of metabolism associated liver disease and hepatocellular carcinoma. V: Discovering new knowledge and technology in life sciences and drug discovery : learning from the past, knowing the future : program & abstracts. Shizuoka: Laboratory of Molecular Toxicology, School of Pharmaceutical Sciences, University of Shizuoka, 2023. Str. 422. https://www.2023iccp450-jssx.org/abstract/2023_ICCP450_JSSX_abstract.pdf. [COBISS.SI-ID 187493635]

2024

45. UMEK, Nejc (avtor, korespondenčni avtor), MEZNARIČ, Marija, ŠINK, Žiga, BLAGOTINŠEK COKAN, Kaja, PROSENC ZMRZLJAK, Uršula, HORVAT, Simon. In situ spatial transcriptomic analysis of human skeletal muscle using the Xenium platform : version v1. Genève: Zenodo, Nov. 2024. 1 spletni vir. https://doi.org/10.5281/zenodo.14173371, https://doi.org/10.21203/rs.3.rs-5012685/v1, DOI: 10.5281/zenodo.14173371. [COBISS.SI-ID 251588099]
projekt: P3-0043 Molekularni mehanizmi razvoja in delovanja skeletne mišice; financer: Slovenian Research and Innovation Agency
projekt: P4-0220 Primerjalna genomika in genomska biodiverziteta; financer: Slovenian Research and Innovation Agency
46. UMEK, Nejc, MEZNARIČ, Marija, ŠINK, Žiga, BLAGOTINŠEK COKAN, Kaja, PROSENC ZMRZLJAK, Uršula, HORVAT, Simon. In situ spatial transcriptomic analysis of human skeletal muscle using the Xenium platform. V: PIRKMAJER, Sergej (ur.), MIŠ, Katarina (ur.). 51st European Muscle Conference, 22-26 September 2024, Ljubljana : book of abstracts. 51st European muscle conference, 22-26 September 2024, Ljubljana. Ljubljana: European Society for Muscle Research, 2024. Str. 230. [COBISS.SI-ID 211395075]
47. BOŠTJANČIČ, Emanuela, BLAGOTINŠEK COKAN, Kaja, PROSENC ZMRZLJAK, Uršula, ZIDAR, Nina. Markers of HPV-positive and HPV-negative squamous cell carcinoma of the larynx, identified by in situ spatial profiling of RNA targets. V: KRANJC BREZAR, Simona (ur.), ČEMAŽAR, Maja (ur.), MARKELC, Boštjan (ur.). 10th Congress of the Genetic Society of Slovenia & 10th meeting of the Slovenian Society for Human Genetics : book of abstracts : September 25th-28th 2024, Faculty of Tourism Studies - Turistica, Portorož, Slovenia]. 1st ed. Ljubljana: Genetic Society of Slovenia: Slovenian Society of Human Genetics, 2024. Str. 43. ISBN 978-961-93545-9-9. [COBISS.SI-ID 210408451]
48. SEWERIN, Sebastian, AURNHAMMER, Charlotte, SKUBIC, Cene, BLAGOTINŠEK COKAN, Kaja, JERUC, Jera, ROZMAN, Damjana, PFISTER, Frederick, DITTRICH, Katalin, MAYER, Brigitte, SCHÖNAUER, Ria, et al. Mechanisms of pathogenicity and the quest for genetic modifiers of kidney disease in branchiootorenal syndrome. Clinical kidney journal. 2024, vol. 17, iss. 1, [article no.] sfad260, str. 1-10, ilustr. ISSN 2048-8513. https://academic.oup.com/ckj/advance-article/doi/10.1093/ckj/sfad260/7313626, Repozitorij Univerze v Ljubljani – RUL, DOI: 10.1093/ckj/sfad260. [COBISS.SI-ID 170379011]
projekt: SE 3451/1–1; financer: German Research Foundation (Deutsche Forschungsgemeinschaft, DFG)
49. BLAGOTINŠEK COKAN, Kaja, MARENTIČ, Ana, HAUPTMAN, Nina, GOVEJŠEK, Tina, BOŠTJANČIČ, Emanuela, UMEK, Nejc, HORVAT, Simon, JENKO BIZJAN, Barbara, SABOLIĆ, Iva, PROSENC ZMRZLJAK, Uršula. Spatial transcriptomics discoveries of human pathologies using Xenium Analyzer. V: KRANJC BREZAR, Simona (ur.), ČEMAŽAR, Maja (ur.), MARKELC, Boštjan (ur.). 10th Congress of the Genetic Society of Slovenia & 10th meeting of the Slovenian Society for Human Genetics : book of abstracts : September 25th-28th 2024, Faculty of Tourism Studies - Turistica, Portorož, Slovenia]. 1st ed. Ljubljana: Genetic Society of Slovenia: Slovenian Society of Human Genetics, 2024. Str. 65. ISBN 978-961-93545-9-9. https://genetika24.sgd.si/wp-content/uploads/2024/09/Gen24_Book_of_Abstracts_Web.pdf. [COBISS.SI-ID 210685187]

2025

50. ZELJKOVIĆ VITAS, Irma, PROSENC ZMRZLJAK, Uršula, BLAGOTINŠEK COKAN, Kaja, KUNEJ, Tanja, HORVAT, Simon, MOŠKON, Miha, UMEK, Nejc. Advancing spatial transcriptomics in complex tissues : a Xenium workflow for skeletal muscle. V: KRANJC BREZAR, Simona (ur.), ČEMAŽAR, Maja (ur.), MARKELC, Boštjan (ur.). 10th Colloquium of Genetics : book of abstracts : September 19th 2025, National Institute of Biology, Marine Biology Station, Piran. Ljubljana: Genetic Society of Slovenia: Slovenian Society of Human Genetics, 2025. Str. 14-15. ISBN 978-961-97126-0-3. https://sgd.si/wp-content/uploads/2025/09/SGD_Zbornik_2025_Kolokvij.pdf. [COBISS.SI-ID 249666307]
51. UMEK, Nejc, MEZNARIČ, Marija, ŠINK, Žiga, BLAGOTINŠEK COKAN, Kaja, PROSENC ZMRZLJAK, Uršula, HORVAT, Simon. In situ spatial transcriptomic analysis of human skeletal muscle using the Xenium platform. Cell and tissue research. 2025, vol. 399, iss. 3, str. 291-302, ilustr. ISSN 0302-766X. https://link.springer.com/article/10.1007/s00441-024-03945-z, Repozitorij Univerze v Ljubljani – RUL, DOI: 10.1007/s00441-024-03945-z. [COBISS.SI-ID 221773059]
52. KREFT, Tinkara (avtor, korespondenčni avtor), BLAGOTINŠEK COKAN, Kaja, SKUBIC, Cene, PERŠE, Martina, WECHTERSBACH, Karmen, KOJC, Nika, JERUC, Jera, DEBELJAK, Željko, MANDIĆ, Dario, HEFFER, Marija, MATZ-SOJA, Madlen, ROZMAN, Damjana. Inducible Cyp51 knockout model reveals sterol imbalance and hepatic alterations in adult mouse liver. V: 24th International Conference on Cytochrome P450 : biochemistry, genomics, and pharmacology : program and abstract book. Bern: [ICCP450], 2025. Str. 119. https://iccp450bern.unibe.ch/. [COBISS.SI-ID 244358659]
53. KREFT, Tinkara, BLAGOTINŠEK COKAN, Kaja, SKUBIC, Cene, PERŠE, Martina, WECHTERSBACH, Karmen, KOJC, Nika, JERUC, Jera, DEBELJAK, Željko, HEFFER, Marija, ROZMAN, Damjana, et al. Novel induccible CYP51 knock-out model enables investigation of sterol dysregulation in adult mouse liver. V: NADIŽAR, Nejc (ur.). 20th CFGBC Symposium : book of abstracts : Slovenia, 11th – 12th June 2025. Electronic version. Ljubljana: University of Ljubljana, Faculty of Medicine, 2025. Str. 57. http://cfgbc.mf.uni-lj.si/wp-content/uploads/2025cfgbcsym20_bookofabstracts.pdf. [COBISS.SI-ID 278300931]
54. KREFT, Tinkara, BLAGOTINŠEK COKAN, Kaja, SKUBIC, Cene, REŽEN, Tadeja, ROZMAN, Damjana (avtor, korespondenčni avtor). Sterol mediated stress response after diminished CYP51A1. V: 24th International Conference on Cytochrome P450 : biochemistry, genomics, and pharmacology : program and abstract book. Bern: [ICCP450], 2025. Str. 100, fotogr. https://iccp450bern.unibe.ch/. [COBISS.SI-ID 244356355]

2026

55. BAYAT, Tara, YEASMIN POPY, Farzana, FLORKE GEE, Rebecca R., BARR, Benjamin, OLAYIWOLA, Yusuff, SOLANO GUTIERREZ, Juan Sebastian, ŠTEPIHAR, Denis, DIAZ-RIAÑO, Jorge, MYERS, Stephanie, BLAGOTINŠEK COKAN, Kaja, ROZMAN, Damjana, et al. Cross-species upregulation of MAGED2 in liver cancer suggests a role in obesity-driven tumor progression. Current issues in molecular biology. 2026, vol. 48, iss. 2, [article no.] 139, str. 1-23, ilustr. ISSN 1467-3045. https://www.mdpi.com/1467-3045/48/2/139, Repozitorij Univerze v Ljubljani – RUL, DOI: 10.3390/cimb48020139. [COBISS.SI-ID 277413635]
56. KREFT, Tinkara, BLAGOTINŠEK COKAN, Kaja, SKUBIC, Cene, REŽEN, Tadeja, PERŠE, Martina, WECHTERSBACH, Karmen, KOJC, Nika, JERUC, Jera, DEBELJAK, Željko, HEFFER, Marija, MATZ-SOJA, Madlen, ROZMAN, Damjana (avtor, korespondenčni avtor). Hepatic management of toxic sterols after acute deletion of Cyp51 from cholesterol synthesis. Journal of biological chemistry. Spletna izd. 2026, vol. , iss. [ahead of print], [article no.] 111188, str. 1-38, ilustr. ISSN 1083-351X. https://www.jbc.org/article/S0021-9258(26)00058-X/fulltext, Repozitorij Univerze v Ljubljani – RUL, DOI: 10.1016/j.jbc.2026.111188. [COBISS.SI-ID 267520771]
projekt: P1-0390, J1-9176, J1-50024, ESFRI-ELIXIR, BI-DE/17-19-8, 10-0022; financer: Slovenian Research and Innovation Agency (ARIS)
projekt: research network LiSyM [031L0053] and LiSyM Cancer [031L0256C and 031L0258E]; financer: Federal Ministry of Education and Research (BMBF, Germany)
57. KOČAR, Eva, BLAGOTINŠEK COKAN, Kaja, KREFT, Tinkara, REŽEN, Tadeja, ROZMAN, Damjana (avtor, korespondenčni avtor). The importance of sex dimorphism in liver metabolism and progressive liver diseases. Biology of sex differences. 2026, vol. 17, iss. 1, [article no.] 14, str. 1-20, ilustr. ISSN 2042-6410. https://link.springer.com/article/10.1186/s13293-025-00811-7, Repozitorij Univerze v Ljubljani – RUL, DOI: 10.1186/s13293-025-00811-7. [COBISS.SI-ID 267517699]
projekt: P1-0104, P1-0390, J3-4513, J1-9176, J1-50024 and ELIXIR-SI RI-SI-2; financer: Slovenian Research and Innovation Agency (ARIS)
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