PhD Blaž Zupan [12536]

1. POLIČAR, Pavlin Gregor, STRAŽAR, Martin, ZUPAN, Blaž. OpenTSNE : a modular Python library for t-SNE dimensionality reduction and embedding. Journal of statistical software. May 2024, vol. 109, iss. 3, str. 1-30, ilustr. ISSN 1548-7660. https://www.jstatsoft.org/article/view/v109i03, DOI: 10.18637/jss.v109.i03. [COBISS.SI-ID 194832899]

2. POLIČAR, Pavlin Gregor, STRAŽAR, Martin, ZUPAN, Blaž. Embedding to reference t-SNE space addresses batch effects in single-cell classification. Machine learning. [Print ed.]. Feb. 2023, vol. 112, iss. 2, str. 721-740, ilustr. ISSN 0885-6125. https://link.springer.com/article/10.1007%2Fs10994-021-06043-1, DOI: 10.1007/s10994-021-06043-1. [COBISS.SI-ID 76932867]

3. DEMŠAR, Janez, ZUPAN, Blaž. Hands-on training about overfitting. PLoS computational biology. [Print ed.]. Mar. 2021, vol. 17, no. 3, str. 1-19, ilustr. ISSN 1553-734X. https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1008671, DOI: 10.1371/journal.pcbi.1008671. [COBISS.SI-ID 54159875]

4. GODEC, Primož, PANČUR, Matjaž, ILENIČ, Nejc, ČOPAR, Andrej, STRAŽAR, Martin, ERJAVEC, Aleš, PRETNAR ŽAGAR, Ajda, DEMŠAR, Janez, STARIČ, Anže, TOPLAK, Marko, ŽAGAR, Lan, HARTMAN, Jan, HAMILTON, Wang, BELLAZZI, Riccardo, PETROVIČ, Uroš, GARAGNA, Silvia, ZUCCOTTI, Maurizio, PARK, Dongsu, SHAULSKY, Gad, ZUPAN, Blaž. Democratized image analytics by visual programming through integration of deep models and small-scale machine learning. Nature communications. 2019, vol. 10, str. 4551-1-4551-7. ISSN 2041-1723. Repository of the University of Ljubljana – RUL , DOI: 10.1038/s41467-019-12397-x. [COBISS.SI-ID 32755751]

5. ŽITNIK, Marinka, ZUPAN, Blaž. Data fusion by matrix factorization. IEEE transactions on pattern analysis and machine intelligence. Jan. 2015, vol. 37, no. 1, str. 41-53, ilustr. ISSN 0162-8828. http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6867358&sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6978008%29. [COBISS.SI-ID 1536103875]

6. ŽITNIK, Marinka, NAM, Edward Adam, DINH, Christopher, KUSPA, Adam, SHAULSKY, Gad, ZUPAN, Blaž. Gene prioritization by compressive data fusion and chaining. PLoS computational biology. [Print ed.]. Oct. 2015, vol. 11, no. 10, str. 1-18, ilustr. ISSN 1553-734X. http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004552, DOI: 10.1371/journal.pcbi.1004552. [COBISS.SI-ID 1536572355]

7. DEMŠAR, Janez, CURK, Tomaž, ERJAVEC, Aleš, GORUP, Črtomir, HOČEVAR, Tomaž, MILUTINOVIĆ, Mitar, MOŽINA, Martin, POLAJNAR, Matija, TOPLAK, Marko, STARIČ, Anže, ŠTAJDOHAR, Miha, UMEK, Lan, ŽAGAR, Lan, ŽBONTAR, Jure, ŽITNIK, Marinka, ZUPAN, Blaž. Orange : data mining toolbox in Python. Journal of machine learning research. [Print ed.]. Aug. 2013, vol. 14, str. 2349-2353. ISSN 1532-4435. http://jmlr.org/papers/volume14/demsar13a/demsar13a.pdf, http://eprints.fri.uni-lj.si/2267/. [COBISS.SI-ID 10118740]

8. VAN DRIESSCHE, Nancy, DEMŠAR, Janez, BOOTH, Egzi O., HILL, Paul, JUVAN, Peter, ZUPAN, Blaž, KUSPA, Adam, SHAULSKY, Gad. Epistasis analysis with global transcriptional phenotypes. Nature genetics. May 2005, vol. 37, no. 5, str. 471-477, ilustr. ISSN 1061-4036. http://eprints.fri.uni-lj.si/894/. [COBISS.SI-ID 4712532]

9. ZUPAN, Blaž, DEMŠAR, Janez, BRATKO, Ivan, JUVAN, Peter, HALTER, John A., KUSPA, Adam, SHAULSKY, Gad. GenePath : a system for automated construction of genetic networks from mutant data. Bioinformatics. [Print ed.]. 2003, vol. 19, no. 3, str. 383-389. ISSN 1367-4803. http://eprints.fri.uni-lj.si/213/. [COBISS.SI-ID 3415124]

10. ZUPAN, Blaž, BOHANEC, Marko, DEMŠAR, Janez, BRATKO, Ivan. Learning by discovery concept hierarchies. Artificial intelligence. [Print ed.]. 1999, vol. 109, str. 211-242. ISSN 0004-3702. [COBISS.SI-ID 14228007]

11. BELLAZZI, Riccardo, ZUPAN, Blaž. Predictive data mining in clinical medicine : current issues and guidelines. International journal of medical informatics. [Print ed.]. 2008, vol. 77, no. 2, str. 81-97, ilustr. ISSN 1386-5056. [COBISS.SI-ID 6280788]