Andrej Bavdek

1. PRISELAC, Dragan, BAVDEK, Andrej, GEKARA, Nelson O., WEISS, Siegfried, GUTIÉRREZ-AGUIRRE, Ion, ANDERLUH, Gregor. Membrane binding properties of listeriolysin O, a cholesterol dependent cytolysin. In: KOS, Janko (ed.), CIMERMAN, Nina (ed.), DROBNIČ-KOŠOROK, Marinka (ed.). 6th Meeting of the Slovenian Biochemical Society with International Participation, Lipica, September 21-25, 2005. Ljubljana: Slovenian Biochemical Society, 2005. Str. 121. ISBN 961-91651-0-1. [COBISS.SI-ID 19981017]

2. BAVDEK, Andrej. Vezava listeriolizina na podprte lipidne membrane : diplomska naloga : univerzitetni študij = Binding of listeriolysin to supported lipid membranes : graduation thesis : university studies. Ljubljana: [A. Bavdek], 2005. IX, 40 f., ilustr., graf. prikazi, pril. [COBISS.SI-ID 1564751]

3. PODLESNIK BESENIČAR, Mojca, BAVDEK, Andrej, ANDERLUH, Gregor. Extracting the cholesterol from chip-immobilised vesicles with methyl-ß-cyclodextrin. European journal of biochemistry : the FEBS journal. Supplement. 2006, letn. 273, suppl. 1, str. 312-313. ISSN 1474-3833. [COBISS.SI-ID 21259481]

4. PETROVIČ, Uroš, MATTIAZZI, Mojca, CVETEK, Janez, JENKO PRAŽNIKAR, Zala, LOGONDER, Uroš, BAVDEK, Andrej, KOVAČIČ, Lidija, PUNGERČAR, Jože, ROWAN, Edward G., ANDERLUH, Franc, KRIŽAJ, Igor. Genome-wide analysis of the molecular mechanism of action of ammodytoxin, a neurotoxic ▫$sPLA_2$▫ in yeast cells : [invited talk]. In: Abstract book. 15th World Congress on Animal, Plant and Microbial Toxins, Sunday 23 July to Friday 28 July, 2006, Glasgow, Scotland at the University of Strathclyde. [Glasgow]: IST, 2006. Str. 40. [COBISS.SI-ID 20010535]

5. MATTIAZZI, Mojca (scribe), PETROVIČ, Uroš, ŠRIBAR, Jernej, BAVDEK, Andrej, ANDERLUH, Gregor, KRIŽAJ, Igor. Potential role of 14-3-3 proteins in biological activity of phospolipases ▫$A_2$▫. In: 1st Symposium on Lipid and membrane Biology : [March 16-18 2006, Graz, Austria]. [Graz]: SFB Research Center, 2006. Str. 15. [COBISS.SI-ID 19759399]

6. BAVDEK, Andrej, ANDERLUH, Gregor. Vezava listeriolizina na podprte lipidne membrane. In: GUNDE-CIMERMAN, Nina (ed.), DROBNE, Damjana (ed.). Biodan 06 : Ljubljana, 22. junij 2006. Ljubljana: Univerza v Ljubljani, Biotehniška fakulteta, 2005. Str. [1]. [COBISS.SI-ID 22818009]

7. BAVDEK, Andrej, PODLESNIK BESENIČAR, Mojca, ANDERLUH, Gregor. Kinetics of cholesterol extraction from lipid membranes by methyl-[beta]-cyclodextrin - a surface plasmon resonance approach. In: POKLAR ULRIH, Nataša (ed.), ABRAM, Veronika (ed.), CIGIĆ, Blaž (ed.). Zbornik povzetkov = Book of abstracts. 7. srečanje Slovenskega biokemijskega društva z mednarodno udeležbo, 26.-29. september 2007 = 7th Meeting of the Slovenian Biochemical Society with International Participation, Maribor, September 26th to 29th, 2007. Ljubljana: Slovensko biokemijsko društvo: = Slovenian Biochemical Society, 2007. Str. 98. ISBN 978-961-91651-3-3. [COBISS.SI-ID 23220185]

8. KACJAN-MARŠIĆ, Nina, SEPČIĆ, Kristina, BAVDEK, Andrej, REGVAR, Marjana, et al. Misija Anfa friki : 3. del oddaje TV Slovenija, I. program, 3. april 2007. Ljubljana, 2007. [COBISS.SI-ID 22783193]

9. BAVDEK, Andrej, GEKARA, Nelson O., PRISELAC, Dragan, GUTIÉRREZ-AGUIRRE, Ion, DARJI, Ayub, CHAKRABORTY, Trinad, MAČEK, Peter, LAKEY, Jeremy H., WEISS, Siegfried, ANDERLUH, Gregor. Sterol and pH interdependence in the binding, oligomerization, and pore formation of listeriolysin O. Biochemistry. [Print ed.]. 2007, letn. 46, št. 14, str. 4425-4437. ISSN 0006-2960. [COBISS.SI-ID 22569689]

10. BAVDEK, Andrej, ANDERLUH, Gregor. Uporaba površinske plazmonske resonance v bazičnih znanostih in analitiki. In: BERDEN ZRIMEC, Maja (ed.), BARLIČ-MAGANJA, Darja (ed.). Biološki detekcijski sistemi v veterini in mikrobiologiji. 1. izd. Grosuplje: Inštitut za fizikalno biologijo, 2007. Str. 87-94. ISBN 978-961-91742-1-0. [COBISS.SI-ID 23308761]

11. PODLESNIK BESENIČAR, Mojca, BAVDEK, Andrej, ANDERLUH, Gregor. Use of surface plasmon resosnace to study structural properties of lipid membranes = Uporaba površinske plazmonske resonance za študij strukturnih lastnosti lipidnih membran : [invited talk]. In: BAVCON KRALJ, Mojca (ed.), TREBŠE, Polonca (ed.). Book of abstracts = Knjiga povzetkov. 15th International Symposium Spectroscopy in Theory and Practice = 15. mednarodni simpozij Spektroskopija v teoriji in praksi, Nova Gorica, Slovenija, 18.-21. april 2007. Nova Gorica: Univerza, 2007. Str. 49. ISBN 978-961-6311-44-1. [COBISS.SI-ID 22675929]

12. PODLESNIK BESENIČAR, Mojca, BAVDEK, Andrej, KLADNIK, Aleš, MAČEK, Peter, ANDERLUH, Gregor. Kinetics of cholesterol extraction from lipid membranes by methyl-beta-cyclodextrin : a surface plasmon resonance approach. Biochimica et biophysica acta. Biomembranes. [Print ed.]. 2008, vol. 1778, str. 175-184. ISSN 0005-2736. [COBISS.SI-ID 1826895]

13. BAVDEK, Andrej, ANDERLUH, Gregor, LAKEY, Jeremy H. Listeriolysin O stability at different physiological conditions. In: 16th European Section Meeting of the International Society on Toxinology, 7-10 September 2008, Leuven, Belgium. [Leuven: s. n., 2008]. 59, str. 35. [COBISS.SI-ID 1896015]

14. BAVDEK, Andrej, ANDERLUH, Gregor. Stabilnost in aktivnost toksina listeriolizina v različnih fizioloških pogojih. In: GUNDE-CIMERMAN, Nina (ed.), DROBNE, Damjana (ed.). Biodan 08 : Ljubljana, 11. februar 2008. Ljubljana: Univerza v Ljubljani, Biotehniška fakulteta, 2008. Str. [1]. [COBISS.SI-ID 23961049]

15. RICH, Rebecca L., ANDERLUH, Gregor, BAVDEK, Andrej, et al. A global benchmark study using affinity-based biosensors. Analytical biochemistry. 2009, issue 2, vol. 386, str. 194-216. ISSN 0003-2697. http://dx.doi.org/10.1016/j.ab.2008.11.021, Repository of the University of Ljubljana – RUL , DOI: 10.1016/j.ab.2008.11.021. [COBISS.SI-ID 1935951]

16. BAVDEK, Andrej, KOSTANJŠEK, Rok, ANDERLUH, Gregor. Aggregation cause listeriolysin O inactivation at physiological conditions. In: Complement, perforins and bacterial cholesterol dependent cytolysins: the hole family, Prato, Italy, 15th-18th April 2009 : delegate handbook. Prato: Monash University, 2009. Str. 35, [034]. [COBISS.SI-ID 2006607]

17. BAVDEK, Andrej, ANDERLUH, Gregor. Listeriolysin O aggregation causes inactivation at physiological conditions. In: GOLIČNIK, Marko (ed.), BAVEC, Aljoša (ed.). Book of abstracts. Joint Congress of the Slovenian Biochemical Society and the Genetic Society of Slovenia with International Participation, Otočec, September 20-23, 2009. Ljubljana: Slovenian Biochemical Society: Genetic Society of Slovenia, 2009. Str. 141. ISBN 978-961-91651-5-7. [COBISS.SI-ID 26059737]

18. AMBROŽIČ, Jerneja, ANDERLUH, Gregor, BAVDEK, Andrej, BELUŠIČ, Gregor, BUTALA, Matej, DRAŠLAR, Kazimir, GOSTINČAR, Cene, GRABNAR, Miklavž, GUNDE-CIMERMAN, Nina, HERZOG-VELIKONJA, Blagajana, JERMAN, Borut, LAPANJE, Aleš, PAŠIĆ, Lejla, RAZPOTNIK, Andrej, SEPČIĆ, Kristina, STARČIČ ERJAVEC, Marjanca, STUŠEK, Peter, TURK, Martina, ŽGUR-BERTOK, Darja. Ocene tveganj za delo z GSO. In: STARČIČ ERJAVEC, Marjanca (ed.), AMBROŽIČ, Jerneja. Gensko spremenjeni organizmi na Oddelku za biologijo Biotehniške fakultete Univerze v Ljubljani. Ljubljana: Biotehniška fakulteta, Oddelek za biologijo, 2009. Str. 37-136. ISBN 978-961-90262-9-8. [COBISS.SI-ID 26997209]

19. ANDERLUH, Gregor, BAVDEK, Andrej, SEPČIĆ, Kristina. Praktikum iz biokemije : za študente prvostopenjskega bolonjskega programa Biologija. Ljubljana: Študentska založba, 2009. 75 str., ilustr., tabele. Knjižna zbirka Scripta. ISBN 978-961-242-234-9. [COBISS.SI-ID 246315776]

20. BAVDEK, Andrej, PODLESNIK BESENIČAR, Mojca, MAČEK, Peter, ANDERLUH, Gregor. Extraction of cholesterol from lipid membranes by methyl-beta-cyclodextrin : a surface plasmon resonance approach. In: HU, Jie (ed.). Cyclodextrins : chemistry and physics. Kerala (India): Transworld Research Network, 2010. Str. 47-59. ISBN 978-81-7895-430-1. [COBISS.SI-ID 2376783]

21. ŽEROVNIK, Eva, TALER-VERČIČ, Ajda, ŠKERGET, Katja, ČERU, Slavko, BAVDEK, Andrej, HODNIK, Vesna, POMPE NOVAK, Maruša, KUMM, Tina, ANDERLUH, Gregor, PALUMAA, Peep, SORIANO, Salvador, KOPITAR-JERALA, Nataša, TURK, Vito. Interactin of A-beta peptide (1-40) with domain swapped oligomers of human stefin B. In: FENS forum abstracts. 7th FENS Forum of European Neuroscience, July 3-7, 2010, Amsterdam, Netherlands. [S. l.]: Federation of European Neuroscience Societies, 2010. Str. 236. ISBN 92-990014-4-8. [COBISS.SI-ID 23784999]

22. TALER-VERČIČ, Ajda, ŠKERGET, Katja, ČERU, Slavko, BAVDEK, Andrej, HODNIK, Vesna, KUMM, Tina, PALUMAA, Peep, SORIANO, Salvador, KOPITAR-JERALA, Nataša, TURK, Vito, ANDERLUH, Gregor, ŽEROVNIK, Eva. Interaction between amyloid beta ▫$(A\beta$)$▫ peptide and stefin B protein is stefin B oligomer-specific. In: Proteinases and their inhibitors : recent developments. 27th Winter School, Tiers, Italy, February 24th - 28th, 2010. [S. l.: S. n.], 2010. Str. 22. [COBISS.SI-ID 23444775]

23. ŠKERGET, Katja, TALER-VERČIČ, Ajda, BAVDEK, Andrej, HODNIK, Vesna, ČERU, Slavko, TUŠEK-ŽNIDARIČ, Magda, POMPE NOVAK, Maruša, KOPITAR-JERALA, Nataša, TURK, Vito, ANDERLUH, Gregor, ŽEROVNIK, Eva, et al. Interaction between oligomers of stefin B and amyloid-beta in vitro and in cells. The Journal of biological chemistry. 2010, vol. 285, no. 5, str. 3201-3210. ISSN 0021-9258. http://dx.doi.org/10.1074/jbc.M109.024620, Repository of the University of Ljubljana – RUL , DOI: 10.1074/jbc.M109.024620. [COBISS.SI-ID 2152783]

24. BAVDEK, Andrej. Molekularni mehanizem vezave listeriolizina O na lipidne membrane : doktorska disertacija = Molecular mechanism of listeriolysin O binding to the lipid membranes : doctoral dissertation. Ljubljana: [A. Bavdek], 2010. XII, 118 f., ilustr., pril. [COBISS.SI-ID 2177359]

25. ANTONINI, Vuokko, MARCHIORETTO, M., PRAPER, Tilen, BAVDEK, Andrej, ANDERLUH, Gregor, DALLA SERRA, Mauro. Planar lipid membranes investigation of listeriolysin pore forming ability. In: Libro degli Abstracts. XX Congreso Nazionale SIBPA, Arcidosso, 11-14 Settembre 2010. Arcidosso: Società Italiana di Biofisica Pura e Applicata, 2010. Str. 103. [COBISS.SI-ID 27895769]

26. MATTIAZZI, Mojca, SUN, Yidi, WOLINSKI, Heimo, BAVDEK, Andrej, PETAN, Toni, ANDERLUH, Gregor, KOHLWEIN, Sepp D., DRUBIN, David, KRIŽAJ, Igor, PETROVIČ, Uroš. A neurotoxic phospholipase ▫$A_2$▫ impairs yeast amphiphysin activity and reduces endocytosis. PloS one. 2012, vol. 7, iss. 7, str. 1-13, e40931. ISSN 1932-6203. DOI: 10.1371/journal.pone.0040931. [COBISS.SI-ID 5026074]

27. BAVDEK, Andrej, KOSTANJŠEK, Rok, ANTONINI, Valeria, LAKEY, Jeremy H., DALLA SERRA, Mauro, GILBERT, Robert J., ANDERLUH, Gregor. pH dependence of listeriolysin O aggregation and pore-forming ability. FEBS journal. 2012, vol. 279, iss. 1, str. 126-141. ISSN 1742-464X. http://onlinelibrary.wiley.com/doi/10.1111/j.1742-4658.2011.08405.x/pdf, DOI: 10.1111/j.1742-4658.2011.08405.x. [COBISS.SI-ID 4881690]

28. PETROVIČ, Uroš, MATTIAZZI, Mojca, KAFERLE, Petra, KOKOŠAR, Janez, KRIŽAJ, Igor, PETAN, Toni, KOCJAN, Tina, BAVDEK, Andrej, CURK, Tomaž, ANDERLUH, Gregor, ZUPAN, Blaž, STAGLJAR, Igor, et al. Saccharomyces cerevisiae cell - a molecular biologist's test tube. In: HUDLER, Petra (ed.), VIDETIČ PASKA, Alja (ed.), JUVAN, Peter (ed.). Molekularna medicina in biotehnologija = Molecular medicine and biotechnology : book of abstracts. Simpozij z mednarodno udele bo ob 40. obletnici In tituta za biokemijo in 20. obletnici Medicinskega centra za molekularno biologijo = International Symposium at 40th Anniversary of Institute of Biochemistry and_ 20th Anniversary of Medical Centre for Molecular Biology, Ljubljana, 27-29 June 2012. Ljubljana: Inštitut za biokemijo, Medicinska fakulteta: = Institute of Biochemistry, Faculty of Medicine, 2012. Str. 50. ISBN 978-961-267-050-4. [COBISS.SI-ID 26056487]

29. PODOBNIK, Marjetka, MARCHIORETTO, Marta, ZANETTI, Manuela, BAVDEK, Andrej, KISOVEC, Matic, CAJNKO, Miša Mojca, LUNELLI, Lorenzo, DALLA SERRA, Mauro, ANDERLUH, Gregor. Plasticity of listeriolysin O pores and its regulation by pH and unique histidine : [lecture]. In: KOS, Janko (ed.), POKLAR ULRIH, Nataša (ed.). Molecules of life : book of abstracts. FEBS3+ Meeting and 11th Meeting of the Slovenian Biochemical Society, September 16-19, 2015, Portorož, Slovenia. Ljubljana: Slovenian Biochemical Society, 2015. Str. 82. ISBN 978-961-93879-0-0. [COBISS.SI-ID 5779994]

30. PODOBNIK, Marjetka, MARCHIORETTO, Marta, ZANETTI, Manuela, BAVDEK, Andrej, KISOVEC, Matic, CAJNKO, Miša Mojca, LUNELLI, Lorenzo, DALLA SERRA, Mauro, ANDERLUH, Gregor. Plasticity of lysteriolysin O pores and its regulation by pH and unique histidine. Scientific reports. Apr. 2015, vol. 5, str. 1-10, ilustr. ISSN 2045-2322. http://www.nature.com/srep/2015/150407/srep09623/pdf/srep09623.pdf, DOI: 10.1038/srep09623. [COBISS.SI-ID 5679642]