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Katja Škerget

Personal bibliography for the period 2004-2021

2004

1. ŠKERGET, Katja. Vpliv polimorfizma genov HLA II. razreda na dovzetnost za multiplo sklerozo v kočevski populaciji : diplomsko delo. Ljubljana: [K. Škerget], 2004. 49 f., ilustr. [COBISS.SI-ID 26157061]

2005

2. ŠKERGET, Katja, KOKALJ-JENKO, Saša, TURK, Dušan, ŽEROVNIK, Eva. Energetics of the two phases in amyloid-fibril formation. In: KOS, Janko (ed.), CIMERMAN, Nina (ed.), DROBNIČ-KOŠOROK, Marinka (ed.). 6th Meeting of the Slovenian Biochemical Society with International Participation, Lipica, September 21-25, 2005. Ljubljana: Slovenian Biochemical Society, 2005. Str. 123. ISBN 961-91651-0-1. [COBISS.SI-ID 19341607]
3. ŽEROVNIK, Eva, KOKALJ-JENKO, Saša, GUNČAR, Gregor, RABZELJ, Sabina, ŠKERGET, Katja, STOKA, Veronika, TURK, Dušan. Human stefin B (cystatin B) as a good model system to study amyloid-fibril formation. Kinetics, morphology and structure. In: OSREDKAR, Damjan (ed.), KORITNIK, Blaž (ed.), BON, Jurij (ed.). Abstract book : [Neuroscience `05 : neurobiology, neurology, psychiatry, cognitive neuroscience]. Sinapsa Neuroscience Symposium, 18th-20th November 2005, Ljubljana, Slovenia_. Ljubljana: Sinapsa, Slovenian Neuroscience Association, 2005. Str. 54. ISBN 961-91704-0-7. [COBISS.SI-ID 19436839]
4. ŽEROVNIK, Eva, RABZELJ, Sabina, ŠKERGET, Katja, GIANNINI, Silva, STOKA, Veronika, KOKALJ-JENKO, Saša, TURK, Dušan, STANIFORTH, Rosemary A. New pieces in solving the puzzle of amyloid-fibril formation; with stefin B as a model protein. In: KOS, Janko (ed.), CIMERMAN, Nina (ed.), DROBNIČ-KOŠOROK, Marinka (ed.). 6th Meeting of the Slovenian Biochemical Society with International Participation, Lipica, September 21-25, 2005. Ljubljana: Slovenian Biochemical Society, 2005. Str. 35. ISBN 961-91651-0-1. [COBISS.SI-ID 19340583]

2006

5. ŽEROVNIK, Eva, ŠKERGET, Katja, TUŠEK-ŽNIDARIČ, Magda, LOESCHNER, Corina, BRAZIER, Marcus W., BROWN, David R. High affinity coppper binding by stefin B (cystatin B) and its role in the inhibition of amyloid fibrillation. FEBS journal. 2006, vol. 273, str. 4250-4263. ISSN 1742-464X. [COBISS.SI-ID 20069927]
6. ŠKERGET, Katja, VILFAN, Andrej, ŽEROVNIK, Eva. Protein concentration effects on the two phases of amyloid-fibril formation by humanoid stefin B. In: 23rd Winter School [on] Proteinases and their Inhibitors, Recent Developments : in Tiers at the Rosengarten, March 1-5, 2006. [S. l.: s. n.], 2006. Str. 68. [COBISS.SI-ID 19801383]
7. ŠKERGET, Katja, TUŠEK-ŽNIDARIČ, Magda, LOESCHNER, Corina, BROWN, David R., ŽEROVNIK, Eva. Role of copper in the inhibition of amyloid fibrillation by human stefin B (cystatin B). In: DOLINAR, Marko (ed.), TURK, Boris (ed.). Book of abstracts. 5th International Conference on Cysteine Proteinases and their Inhibitors: From Structure to Regulation and Biology, Portorož, Slovenia, September 2-6, 2006. Ljubljana: Jožef Stefan Institute, 2006. Str. 96. ISBN 961-6303-80-5. [COBISS.SI-ID 20126247]
8. KOKALJ-JENKO, Saša, GUNČAR, Gregor, ŠTERN, Igor, MORGAN, G. Edward, ŠKERGET, Katja, RABZELJ, Sabina, KENIG, Manca, TURK, Vito, ŽEROVNIK, Eva, TURK, Dušan. Structure of cystatin B tetrameter : prolines as switches in amyloid fibril formation. In: Abstract book. 5th Forum of European Neuroscience, Vienna, 8-12 July 2006. [S. l.]: FENS. Str. 245. ISBN 92-990014-2-1. [COBISS.SI-ID 19970343]

2007

9. ŽEROVNIK, Eva, ŠKARABOT, Miha, ŠKERGET, Katja, GIANNINI, Silva, STOKA, Veronika, KOKALJ-JENKO, Saša, STANIFORTH, Rosemary A. Amyloid fibril formation by human stefin B : influence of pH and TFE on fibril growth and morphology. Amyloid. 2007, vol. 14, no. 3, str. 237-247. ISSN 1350-6129. [COBISS.SI-ID 21005095]
10. ŠKERGET, Katja, ČERU, Slavko, RABZELJ, Sabina, TUŠEK-ŽNIDARIČ, Magda, ŽEROVNIK, Eva. Human stefin B: interaction with amyloid-beta protein. In: POKLAR ULRIH, Nataša (ed.), ABRAM, Veronika (ed.), CIGIĆ, Blaž (ed.). Zbornik povzetkov = Book of abstracts. 7. srečanje Slovenskega biokemijskega društva z mednarodno udeležbo, 26.-29. september 2007 = 7th Meeting of the Slovenian Biochemical Society with International Participation, Maribor, September 26th to 29th, 2007. Ljubljana: Slovensko biokemijsko društvo: = Slovenian Biochemical Society, 2007. Str. 133. ISBN 978-961-91651-3-3. [COBISS.SI-ID 23232217]
11. ŠKERGET, Katja, ŽEROVNIK, Eva, VILFAN, Andrej. The mechanism of amyloid-fibril formation by stefin B : temperature and protein concentration dependence of the rates. In: KORITNIK, Blaž (ed.), OSREDKAR, Damjan (ed.). Book of abstracts. Sinapsa Neuroscience Conference '07, 5th-7th October 2007, Ljubljana. Ljubljana: Sinapsa, Slovensko društvo za nevroznanost, Slovenian Neuroscience Association, 2007. Str. 28. ISBN 978-961-91704-2-7. [COBISS.SI-ID 21123367]
12. ŠKERGET, Katja, VILFAN, Andrej, KOKALJ-JENKO, Saša, TURK, Vito, TURK, Dušan, ŽEROVNIK, Eva. Model for stefin B amyloid-fibrillation from the kinetics & size of the toxic oligomers. In: DOLINAR, Marko (ed.), STOKA, Veronika (ed.), TURK, Boris (ed.). From single molecules to degradomics : book of abstracts. Xth International Symposium on Proteinase Inhibitors and Biological Control, Portorož, Slovenia, June 23-27, 2007. Ljubljana: Jožef Stefan Institute, 2007. Str. 83. ISBN 978-961-6303-92-7. [COBISS.SI-ID 20909095]
13. ŽEROVNIK, Eva, ČERU, Slavko, ŠKERGET, Katja, VILFAN, Andrej, KOKALJ-JENKO, Saša, RABZELJ, Sabina, ANDERLUH, Gregor, TURK, Vito, TURK, Dušan, STANIFORTH, Allan. Model for stefin B amyloid-fibrillation from the kinetics & size the toxic oligomers. In: III. Meeting on Molecular Mechanisms of Neurodegeneration : Aula Magna dell'Universita' degli Studi di Milano, May 19-21,2007, Milano, Italy. [S.l.: s.n.], 2007. [COBISS.SI-ID 20771879]
14. ŠKERGET, Katja, TUŠEK-ŽNIDARIČ, Magda, LOESCHNER, Corina, BROWN, David R., ŽEROVNIK, Eva. Role of copper in the inhibition of amyloid fibrillation by human stefin B (cystatin B). In: 24th Winter School Proteinases and their Inhibitors : in Tiers at the Rosengarten, Febr. 28th - March 4th, 2007. [S.l.: s.n.], 2007. Str. 52. [COBISS.SI-ID 20627239]
15. ŠKERGET, Katja. Towards the understanding of the mechanism of amyloid fibril formation: in vitro studies and differential gene expression : presented at Functional Genomics and Proteomics in Molecular Medicine, 3-9 June, 2007, Split, Croatia. 2007. [COBISS.SI-ID 20908839]

2008

16. ŠKERGET, Katja, ČERU, Slavko, RABZELJ, Sabina, TUŠEK-ŽNIDARIČ, Magda, ŽEROVNIK, Eva. Human stefin B : interaction with amyloid-beta (1-40) peptide. In: DOLINAR, Marko (ed.), STOKA, Veronika (ed.), TURK, Boris (ed.). Book of abstracts. XIth Symposium on Proteinase Inhibitors and Biological Control, Portorož, Slovenia, August 30 - September 3, 2008. Ljubljana: Jožef Stefan Institute, 2008. Str. 50. ISBN 978-961-264-001-9. [COBISS.SI-ID 22185255]
17. ŠKERGET, Katja, VILFAN, Andrej, TURK, Dušan, ŽEROVNIK, Eva. A model for amyloid formation by human stefin B (cystatin B) : [presented at 33rd FEBS Congress & 11th IUBMB Conference 28 June - 3 July 2008, Megaron Athens, Athens]. FEBS journal. 2008, vol. 275, suppl. 1, str. 199. ISSN 1742-464X. [COBISS.SI-ID 21880359]
18. TALER-VERČIČ, Ajda, ČERU, Slavko, ŠKERGET, Katja, ŽEROVNIK, Eva. Oligomers of human stefin B : their interconversions in vitro and in vivo?. In: DOLINAR, Marko (ed.), STOKA, Veronika (ed.), TURK, Boris (ed.). Book of abstracts. XIth Symposium on Proteinase Inhibitors and Biological Control, Portorož, Slovenia, August 30 - September 3, 2008. Ljubljana: Jožef Stefan Institute, 2008. Str. 49. ISBN 978-961-264-001-9. [COBISS.SI-ID 22186279]
19. MATTIAZZI, Mojca, ŠKERGET, Katja, KAFERLE, Petra, KOKOŠAR, Janez, PRELEC, Metod, JEREB, Matej, CURK, Tomaž, KRIŽAJ, Igor, ZUPAN, Blaž, PETROVIČ, Uroš. Towards understanding lipid-associated disorders and neurodegenerative diseases throygh functional genomics in yeast Saccharomyces cerevisiae. In: BAVEC, Aljoša (ed.). From arrays to understanding diseases. 3rd CFGBC Symposium, Ljubljana, June 19, 2008. Ljubljana: Faculty of Medicine, 2008. Str. 14. ISBN 978-961-6264-98-3. [COBISS.SI-ID 21854759]

2009

20. ŠKERGET, Katja, ČERU, Slavko, ŽEROVNIK, Eva. Interaction of human stefin B with A▫$\beta$▫ peptide. In: GOLIČNIK, Marko (ed.), BAVEC, Aljoša (ed.). Book of abstracts. Joint Congress of the Slovenian Biochemical Society and the Genetic Society of Slovenia with International Participation, Otočec, September 20-23, 2009. Ljubljana: Slovenian Biochemical Society: Genetic Society of Slovenia, 2009. Str. 108. ISBN 978-961-91651-5-7. [COBISS.SI-ID 23063335]
21. ŠKERGET, Katja, ČERU, Slavko, SORIANO, Salvador, ŽEROVNIK, Eva. Interaction of stefin B (cystatin B) and A-beta in vitro and in the cell : [invited talk]. In: KORITNIK, Blaž (ed.), OSREDKAR, Damjan (ed.). Book of abstracts. Sinapsa Neuroscience Conference '09, Faculty of Medicine, University of Ljubljana, 26th - 29th September 2009. Ljubljana: Sinapsa, Slovenian Neuroscience Association, 2009. Str. 36. ISBN 978-961-91704-3-4. [COBISS.SI-ID 23063079]
22. ŽEROVNIK, Eva, VILFAN, Andrej, ŠKERGET, Katja. Model for amyloid fibril formation by human stefin B. In: International Bunsen Discussion Meeting on Structure of Amyloid Fibrils and Mechanism of Amyloid Formation : 8-11 February 2009, Halle an der Saale (Germany). [S. l.: s. n.], 2009. Str. 171. [COBISS.SI-ID 22444583]
23. ŠKERGET, Katja, VILFAN, Andrej, TALER-VERČIČ, Ajda, TUŠEK-ŽNIDARIČ, Magda, ANDERLUH, Gregor, PALUMAA, Peep, KOKALJ-JENKO, Saša, TURK, Vito, TURK, Dušan, ŽEROVNIK, Eva. Stefin B - modelni protein za študij napačnega zvijanja proteinov in njihove agregacije. In: ISKRA, Jernej (ed.), MILOŠEV, Ingrid (ed.). Dan mladih raziskovalcev 2009. Ljubljana: Institut "Jožef Stefan", 2009. 1 str. ISBN 978-961-264-009-5. [COBISS.SI-ID 22431015]
24. ŠKERGET, Katja, VILFAN, Andrej, POMPE NOVAK, Maruša, TURK, Vito, WALTHO, Jonathan P., TURK, Dušan, ŽEROVNIK, Eva. The mechanism of amyloid-fibril formation by stefin B : temperature and protein concentration dependence of the rates. Proteins. [Print ed.]. 2009, vol. 74, no. 2, str. 425-436. ISSN 0887-3585. [COBISS.SI-ID 21880103]
25. ŠKERGET, Katja, MATTIAZZI, Mojca, ŽEROVNIK, Eva, PETROVIČ, Uroš. Using yeast functional genomics to study neurodegeneration : [invited talk]. In: KORITNIK, Blaž (ed.), OSREDKAR, Damjan (ed.). Book of abstracts. Sinapsa Neuroscience Conference '09, Faculty of Medicine, University of Ljubljana, 26th - 29th September 2009. Ljubljana: Sinapsa, Slovenian Neuroscience Association, 2009. Str. 35. ISBN 978-961-91704-3-4. [COBISS.SI-ID 22936871]

2010

26. POLAJNAR, Mira, ČERU, Slavko, ŠKERGET, Katja, ŽEROVNIK, Eva. In vitro and cellular studies of EPM1 mutants of human stefin B. In: DOLINAR, Marko (ed.), STOKA, Veronika (ed.), TURK, Boris (ed.). Book of abstracts. XIIth Symposium on Proteases, Inhibitors and Biological Control, Portorož, Slovenia, September 25-29, 2010. Ljubljana: Jožef Stefan Institute, 2010. Str. 81. ISBN 978-961-264-022-4. [COBISS.SI-ID 24073511]
27. POLAJNAR, Mira, TALER-VERČIČ, Ajda, ČERU, Slavko, ŠKERGET, Katja, RABZELJ, Sabina, KOPITAR-JERALA, Nataša, ŽEROVNIK, Eva. In vitro and cellular studies of EPM1 mutants of human stefin B : presented at "Biophysics in Molecular Mechanisms in Neurodegeneration" School of Pure and Applied Biophysics, 25-29 January 2010, Venecia, Italy. 2010. [COBISS.SI-ID 24301095]
28. ŽEROVNIK, Eva, TALER-VERČIČ, Ajda, ŠKERGET, Katja, ČERU, Slavko, BAVDEK, Andrej, HODNIK, Vesna, POMPE NOVAK, Maruša, KUMM, Tina, ANDERLUH, Gregor, PALUMAA, Peep, SORIANO, Salvador, KOPITAR-JERALA, Nataša, TURK, Vito. Interactin of A-beta peptide (1-40) with domain swapped oligomers of human stefin B. In: FENS forum abstracts. 7th FENS Forum of European Neuroscience, July 3-7, 2010, Amsterdam, Netherlands. [S. l.]: Federation of European Neuroscience Societies, 2010. Str. 236. ISBN 92-990014-4-8. [COBISS.SI-ID 23784999]
29. TALER-VERČIČ, Ajda, ŠKERGET, Katja, ČERU, Slavko, BAVDEK, Andrej, HODNIK, Vesna, KUMM, Tina, PALUMAA, Peep, SORIANO, Salvador, KOPITAR-JERALA, Nataša, TURK, Vito, ANDERLUH, Gregor, ŽEROVNIK, Eva. Interaction between amyloid beta ▫$(A\beta$)$▫ peptide and stefin B protein is stefin B oligomer-specific. In: Proteinases and their inhibitors : recent developments. 27th Winter School, Tiers, Italy, February 24th - 28th, 2010. [S. l.: S. n.], 2010. Str. 22. [COBISS.SI-ID 23444775]
30. ŠKERGET, Katja, TALER-VERČIČ, Ajda, BAVDEK, Andrej, HODNIK, Vesna, ČERU, Slavko, TUŠEK-ŽNIDARIČ, Magda, POMPE NOVAK, Maruša, KOPITAR-JERALA, Nataša, TURK, Vito, ANDERLUH, Gregor, ŽEROVNIK, Eva, et al. Interaction between oligomers of stefin B and amyloid-beta in vitro and in cells. The Journal of biological chemistry. 2010, vol. 285, no. 5, str. 3201-3210. ISSN 0021-9258. http://dx.doi.org/10.1074/jbc.M109.024620, Repository of the University of Ljubljana – RUL , DOI: 10.1074/jbc.M109.024620. [COBISS.SI-ID 2152783]
31. TALER-VERČIČ, Ajda, ŠKERGET, Katja, ČERU, Slavko, KOPITAR-JERALA, Nataša, TURK, Vito. Stefin B oligomers bind amyloid-beta in vitro and likely in cells. In: Progressive myoclonus epilepsies : PMEs in the new millennium : from Marseille to Venice. International Symposium PME 2010, Venice, San Servolo Island, 28 April - 1 May 2010. [S. l.: s. n.], 2010. [COBISS.SI-ID 23619879]

2011

32. ŠKERGET, Katja. Prispevek k razumevanju mehanizma amiloidne agregacije proteinov ter njenih celičnih učinkov : doktorska disertacija = Contribution to understanding of the mechanism of amyloid fibril formation and its effects on the cell : doctoral dissertation. [Ljubljana: K. Škerget], 2011. XIV, 88 str., [48] str. pril., ilustr., tabele. [COBISS.SI-ID 255775744]

2014

33. POLAJNAR, Mira, ZAVAŠNIK-BERGANT, Tina, ŠKERGET, Katja, VIZOVIŠEK, Matej, VIDMAR, Robert, FONOVIĆ, Marko, KOPITAR-JERALA, Nataša, PETROVIČ, Uroš, NAVARRO, Susanna, VENTURA, Salvador, ŽEROVNIK, Eva. Human stefin B role in cell's response to misfolded proteins and autophagy. PloS one. 2014, vol. 9, no. 7, str. e102500-1-e102500-15. ISSN 1932-6203. http://www.plosone.org/article/fetchObject.action?uri=info%3Adoi%2F10.1371%2Fjournal.pone.0102500&representation=PDF, DOI: 10.1371/journal.pone.0102500. [COBISS.SI-ID 27852327]

2020

34. GANTAR, Kaja, ŠKERGET, Katja, MOCHKIN, Ilya, BAJC, Aleksander. Meeting regulatory requirements for drugs with a narrow therapeutic index: bioequivalence studies of generic once-daily tacrolimus. Drug, healthcare and patient safety. 2020, vol. 12, str. 151-160. ISSN 1179-1365. DOI: 10.2147/DHPS.S256455. [COBISS.SI-ID 30274563]

2021

35. ŠKERGET, Katja (discussant), DROLC, Tanja (discussant), SLADIČ, Alojz (discussant), RIHTER, Andreja (discussant), HROVATIČ, Dubravka (discussant). Socialnovarstvena storitev pomoč žrtvam kaznivih dejanj : XXVII. Dnevi socialne zbornice Slovenije, 7. in 8. oktober 2021, Portorož. [COBISS.SI-ID 82042115]
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