Adrian Fox

1. RAVNIKAR, Maja, MEHLE, Nataša, GUTIÉRREZ-AGUIRRE, Ion, PECMAN, Anja, ADAMS, Ian, FOX, Adrian, BOONHAM, Neil, KUTNJAK, Denis. Detection of plant viruses by next generation sequencing. In: Workshop on the use of NGS technologies for plant pest diagnostics, Hotel Excelsior, Bari, 2017-11-22/23. [S. l.: s. n., 2017]. Str. 13. http://archives.eppo.int/MEETINGS/2017_conferences/NGS/Brochure_NGS_Bari_2017.pdf. [COBISS.SI-ID 4554063]

2. PECMAN, Anja, KUTNJAK, Denis, GUTIÉRREZ-AGUIRRE, Ion, ADAMS, Ian, FOX, Adrian, BOONHAM, Neil, RAVNIKAR, Maja. Next generation sequencing for detection and discovery of plant viruses and viroids : comparison of two approaches. In: VODOVNIK, Maša (ed.), KUŠAR, Darja (ed.), MARINŠEK-LOGAR, Romana (ed.). Knjiga povzetkov. 7. kongres Slovenskega mikrobiološkega društva, 20.-22. september 2017, Bled, Slovenija. Ljubljana: Slovensko mikrobiološko društvo, 2017. Str. 71. ISBN 978-961-90346-6-8. [COBISS.SI-ID 4436815]

3. PECMAN, Anja, KUTNJAK, Denis, GUTIÉRREZ-AGUIRRE, Ion, ADAMS, Ian, FOX, Adrian, BOONHAM, Neil, RAVNIKAR, Maja. Next generation sequencing for detection and discovery of plant viruses and viroids : comparison of two approaches. Frontiers in microbiology. 2017, vol. 8, str. 1-10. ISSN 1664-302X. https://dx.doi.org/10.3389/fmicb.2017.01998, DiRROS - Digital repository of Slovenian research organizations, DOI: 10.3389/fmicb.2017.01998. [COBISS.SI-ID 4476495]

4. LACOMME, Christophe, PICKUP, Jon, FOX, Adrian, GLAIS, Laurent, DUPUIS, Brice, STEINGER, Thomas, ROLOT, Jean-Louis, VALKONEN, Jari P. T., KRÜGER, Kerstin, NIE, Xianzhou, MODIC, Špela, MEHLE, Nataša, RAVNIKAR, Maja, HULLÉ, Maurice. Transmission and epidemiology of Potato virus Y. In: LACOMME, Christophe (ed.), et al. Potato virus Y : biodiversity, pathogenicity, epidemiology and management. Cham: Springer, 2017. Str. 141-176, ilustr. ISBN 978-3-319-58858-2. DOI: 10.1007/978-3-319-58860-5_6. [COBISS.SI-ID 4444239]

5. PECMAN, Anja, KUTNJAK, Denis, MEHLE, Nataša, TUŠEK-ŽNIDARIČ, Magda, FOX, Adrian, GUTIÉRREZ-AGUIRRE, Ion, PIRNAT, Patricija, ADAMS, Ian, BOONHAM, Neil, RAVNIKAR, Maja. Comparison of NGS-aided plant virus discovery techniques. In: HTS technologies for the study and diagnostic of plant viruses : general information, program, abstract book. Final Meeting of COST-DIVAS Action, Liège (Belgium), 26th to 30th November 2018. [S. l.: s. n., 2018]. Str. 26. [COBISS.SI-ID 4906063]

6. ROENHORST, J.W., KROM, C. de, FOX, Adrian, MEHLE, Nataša, RAVNIKAR, Maja, WERKMAN, A. W. Ensuring validation in diagnostic testing is fit for purpose : a view from the plant virology laboratory. Bulletin OEPP. 2018, vol. 48, no. 1, str. 105-115. ISSN 0250-8052. DOI: 10.1111/epp.12445. [COBISS.SI-ID 4627279]

7. PECMAN, Anja, SCHMIDT, Anna-Mary, DE JONGHE, Kris, GALA, Jean-Luc, LACOMME, Christophe, GURP, Thomas van, EBSKAMP, Michel, HOSTACHY, Bruno, MASSÉ, Delphine, BOONHAM, Neil, FOX, Adrian, ADAMS, Ian, LIVIERATOS, Ioannis, MEHLE, Nataša, KUTNJAK, Denis, RAVNIKAR, Maja, WEI, Gang, MASSART, Sébastien. VIRFAST: faster, cheaper identification of emerging plant virus problems : London Calling conference hosted by Oxford Nanopore, 24th - 25th May 2018, London. [COBISS.SI-ID 4706895]

8. PECMAN, Anja, KUTNJAK, Denis, ADAMS, Ian, GUTIÉRREZ-AGUIRRE, Ion, FOX, Adrian, BOONHAM, Neil, RAVNIKAR, Maja. Comparison of two high-throughput sequencing technologies : MinION (Oxford Nanopore Technologies) and MiSeq (Illumina platform) for detection of plant viruses and viroids. In: TOPOLE, Martin (ed.), et al. Knjiga povzetkov : science of the future how to stay up-to-date with your research! = Book of abstracts. 11. študentska konferenca Mednarodne podiplomske šole Jožefa Stefana in 13. dneva mladih raziskovalcev (Konferenca KMBO), 15. in 16. april 2019, Planica, Slovenija = 11th Jožef Stefan International Postgraduate School Students' Conference and 13th Young Researchers' Day, 15th and 16th May 2019, Planica, Slovenia. Ljubljana: Mednarodna podiplomska šola Jožefa Stefana: = Jožef Stefan International Postgraduate School: Inštitut Jožef Stefan: = Jožef Stefan Institute, 2019. Str. 57. http://ipssc.mps.si/Proceedings/Proceedings2019.pdf. [COBISS.SI-ID 5076303]

9. PECMAN, Anja, KUTNJAK, Denis, ADAMS, Ian, GUTIÉRREZ-AGUIRRE, Ion, FOX, Adrian, BOONHAM, Neil, RAVNIKAR, Maja. How does nanopore sequencing compare to Illumina sequencing for detection of plant viruses and viroids. In: Programme and abstracts : International Advances in Plant Virology 2021 : virtually via Zoom : 20th April - 22nd April 2021. [S. l.: Association of Applied Biologists], 2021. Str. 116. https://custom.cvent.com/05F40F40EA964BBB968323D70A3E1C38/files/event/ef4ceb27d30d4676a7f14cb5d4dd7663/bd3a825c81194b88a904a9bd5738cd44.pdf. [COBISS.SI-ID 62641155]

10. PECMAN, Anja, KUTNJAK, Denis, ADAMS, Ian, GUTIÉRREZ-AGUIRRE, Ion, FOX, Adrian, BOONHAM, Neil, RAVNIKAR, Maja. On the way to fast "on-site" detecion of plant viruses and viroids. In: HORVAT ZAGOREC, Monika (ed.), et al. Cutting Edge 2021 : scientific conference for young researchers : independent in science : Thursday, 16. 09. 21, virtual conference : book of abstracts. Ljubljana: Fakulteta za kemijo in kemijsko tehnologijo, 2021. Str. 15, ilustr. ISBN 978-961-7078-21-3. [COBISS.SI-ID 78086403]

11. FOX, Adrian, MEHLE, Nataša, MEHLE, Nataša, ROENHORST, Annelien J. W., OPLAAT, A. G., TOMASSOLI, Laura, ZIEBELL, Heiko. PM 7/146 (1) Tomato brown rugose fruit virus. Bulletin OEPP. 2021, vol. 51, iss. 1, str. 178-197, ilustr. ISSN 0250-8052. https://onlinelibrary.wiley.com/doi/epdf/10.1111/epp.12723, DOI: 10.1111/epp.12723. [COBISS.SI-ID 61085187]

12. PECMAN, Anja, ADAMS, Ian, GUTIÉRREZ-AGUIRRE, Ion, FOX, Adrian, BOONHAM, Neil, RAVNIKAR, Maja, KUTNJAK, Denis. High throughput sequencing for plant viruses/viroids detection : comparison of two platforms MinION (Oxford nanopore technologies) and MiSeq (Illumina). https://www.apsnet.org/meetings/annual/PH2022/Pages/default.aspx. [COBISS.SI-ID 119629315]

13. FONTDEVILA, Núria, MAACHI, Ayoub, TEMPLE, Coline, PAMBLANCO, Ferran Salavert, ROLLIN, Johan, RIVAREZ, Mark Paul Selda, KHALILI, Maryam, FOX, Adrian, MARAIS, Armelle, TRONTIN, Charlotte, KUTNJAK, Denis, PETTER, Françoise, RAVNIKAR, Maja, et al. Managing the deluge of newly discovered plant viruses and viroids : an optimised framework to evaluate their biosecurity, commercial, regulatory, and scientific impacts. In: International advances in plant virology 2022 : hybrid event hosted in Ljubljana, Slovenia 5th-7th October 2022 : programme, abstracts and delegate list. Warwick: Association of Applied Biologists, 2022. Str. 18-19. [COBISS.SI-ID 128922883]

14. FOX, Adrian, MEHLE, Nataša, et al. PM 7/146 (2) Tomato brown rugose fruit virus. Bulletin OEPP. Dec. 2022, vol. 52, iss. 3, str. 665-692, ilustr. ISSN 1365-2338. https://doi.org/10.1111/epp.12891, DOI: 10.1111/epp.12891. [COBISS.SI-ID 131297027]

15. VUČUROVIĆ, Ana, KUTNJAK, Denis, GUTIÉRREZ-AGUIRRE, Ion, RAVNIKAR, Maja, BAČNIK, Katarina, MAKSIMOVIĆ, Olivera, FOX, Adrian, BRODARIČ, Jakob, BAJDE, Irena, KITEK, Miha, MEHLE, Nataša. The role of water in the epidemiology of tomato brown rugose fruit virus. In: FEMS conference on microbiology : 30 June - 2 July 2022, Belgrade, Serbia : electronic abstract book. Belgrade: Serbian Society of Microbiology, 2022. Str. 921-922. ISBN 978-86-914897-8-6. [COBISS.SI-ID 125517315]

16. PECMAN, Anja, ADAMS, Ian, GUTIÉRREZ-AGUIRRE, Ion, FOX, Adrian, BOONHAM, Neil, RAVNIKAR, Maja, KUTNJAK, Denis. Systematic comparison of nanopore and illumina sequencing for the detection of plant viruses and viroids using total RNA sequencing approach. Frontiers in microbiology. 2022, vol. 13, str. 1-14, ilustr. ISSN 1664-302X. https://www.frontiersin.org/articles/10.3389/fmicb.2022.883921/full, DiRROS - Digital repository of Slovenian research organizations, DOI: 10.3389/fmicb.2022.883921. [COBISS.SI-ID 108948739]

17. VUČUROVIĆ, Ana, KUTNJAK, Denis, GUTIÉRREZ-AGUIRRE, Ion, RAVNIKAR, Maja, BAČNIK, Katarina, MAKSIMOVIĆ, Olivera, FOX, Adrian, BRODARIČ, Jakob, BAJDE, Irena, KITEK, Miha, MEHLE, Nataša. Tomato brown rugose fruit virus in aqueous environments : survival and significance of water-mediated transmission. In: Epidemiology and management of plant viruses under a changing climate : book of abstracts. 15th ISPVE Madrid 2022, Madrid, Spain, 5-8th June, 2022. [S. l.: s. n., 2022]. Str. 9. [COBISS.SI-ID 111585795]

18. VUČUROVIĆ, Ana, KUTNJAK, Denis, GUTIÉRREZ-AGUIRRE, Ion, RAVNIKAR, Maja, BAČNIK, Katarina, MAKSIMOVIĆ, Olivera, FOX, Adrian, LOH, Yue Lin, BRODARIČ, Jakob, BAJDE, Irena, KITEK, Miha, MEHLE, Nataša. Water-linked epidemiology of tomato brown rugose fruit virus. In: International advances in plant virology 2022 : hybrid event hosted in Ljubljana, Slovenia 5th-7th October 2022 : programme, abstracts and delegate list. Warwick: Association of Applied Biologists, 2022. Str. 8. [COBISS.SI-ID 126868739]

19. FOX, Adrian, FOWKES, Aimee, LOH, Yue Lin, MEHLE, Nataša, MAKSIMOVIĆ, Olivera, GEMERT, Jerom van, BOTERMANS, Marleen, SKELTON, Anna. Improving strategies for tomato brown rugose fruit virus surveillance in tomato fruit production. In: 12th International Congress on Plant Pathology : ICPP2023 : 20-25 August 2023, Lyon, France. Lyon: French Phytopathological Society: 2023. 2023, str. 1016-1017. https://www.icpp2023.org/sites/default/files/2023-08/ICPP2023-BOOK-ABSTRACTS-VF.pdf. [COBISS.SI-ID 166072835]

20. VUČUROVIĆ, Ana, BAČNIK, Katarina, BAJDE, Irena, BRODARIČ, Jakob, FOX, Adrian, GUTIÉRREZ-AGUIRRE, Ion, KITEK, Miha, KUTNJAK, Denis, LOH, Yue Lin, MAKSIMOVIĆ, Olivera, RAVNIKAR, Maja, MEHLE, Nataša, et al. Preživetje virusa rjave grbančavosti plodov paradižnika in njegov prenos z vodo = Survival in and transmission by water of tomato brown rugose fruit virus. In: ČEH, Barbara (ed.), et al. Novi izzivi v agronomiji 2023 = New Challenges in Agronomy 2023 : program simpozija in povzetki prispevkov, ki niso objavljeni v zborniku = symposium program and summaries : [Laško, 26. in 27. januar 2023]. Laško: Slovensko agronomsko društvo: = Slovenian Society of Agronomy, 2023. Str. 60-61, ilustr. ISBN 978-961-94613-2-7. https://www.agronomsko-drustvo.si/wp-content/uploads/2023/01/NIA_2023_program.pdf. [COBISS.SI-ID 140140547]

21. MEHLE, Nataša, BAČNIK, Katarina, BAJDE, Irena, BRODARIČ, Jakob, FOX, Adrian, GUTIÉRREZ-AGUIRRE, Ion, KITEK, Miha, KUTNJAK, Denis, LOH, Yue Lin, MAKSIMOVIĆ, Olivera, RAVNIKAR, Maja, VOGEL, Elise, VOS, Christine, VUČUROVIĆ, Ana. Tomato brown rugose fruit virus in aqueous environments : survival and significance of water-mediated transmission. Frontiers in plant science. 2023, vol. 14, art. 1187920, str. 1-15, ilustr. ISSN 1664-462X. https://doi.org/10.3389/fpls.2023.1187920, https://www.frontiersin.org/articles/10.3389/fpls.2023.1187920/full#supplementary-material, Repository of the University of Ljubljana – RUL , DiRROS - Digital repository of Slovenian research organizations, DOI: 10.3389/fpls.2023.1187920. [COBISS.SI-ID 154635011]

22. MEHLE, Nataša, BAJDE, Irena, BRODARIČ, Jakob, MAKSIMOVIĆ, Olivera, FOX, Adrian, KITEK, Miha, LOH, Yue Lin, GUTIÉRREZ-AGUIRRE, Ion, KUTNJAK, Denis, BAČNIK, Katarina, RAVNIKAR, Maja, VUČUROVIĆ, Ana. Water and soil contaminated with emerging tobamoviruses are the source of plant infections. In: 12th International Congress on Plant Pathology : ICPP2023 : 20-25 August 2023, Lyon, France. Lyon: French Phytopathological Society: 2023. 2023, str. 1016. https://www.icpp2023.org/sites/default/files/2023-08/ICPP2023-BOOK-ABSTRACTS-VF.pdf. [COBISS.SI-ID 165305859]

23. MEHLE, Nataša, BAJDE, Irena, BRODARIČ, Jakob, FOX, Adrian, KITEK, Miha, KUTNJAK, Denis, RAVNIKAR, Maja, VUČUROVIĆ, Ana. Rastni substrat in voda onesnaženi s tobamovirusi so lahko vir okužbe rastlin = Growing medium and water contaminated with tobamoviruses can be a source of plant infection. In: TRDAN, Stanislav (ed.). 16. slovensko posvetovanje o varstvu rastlin z mednarodno udeležbo = 16th Slovenian Conference on Plant Protection with International Participation : izvlečki referatov = abstract volume : 5.-6. marec 2024, Bohinjska Bistrica, Slovenija. Ljubljana: Društvo za varstvo rastlin Slovenije: = Plant Protection Society of Slovenia, 2024. Str. 96-97. ISBN 978-961-96561-0-5. https://dvrs.si/wp-content/uploads/2024_Zbornik_izvleckov_SPVR.pdf. [COBISS.SI-ID 190950659]

24. BOTERMANS, Marleen, VOSSENBERG, Bart van de, FOX, Adrian, VÁZQUEZ, Inés, JONKERS, Wilfried, KUTNJAK, Denis, MEHLE, Nataša, PERMINAITE, Asta, ROLLAND, Mathieu. Supporting information S2: Examples of High Throughput Sequencing (HTS) tests for the detection and identification of viruses and viroids. Bulletin OEPP. 2024, vol. , iss. , str. 1-19, ilustr. ISSN 1365-2338. https://onlinelibrary.wiley.com/doi/10.1111/epp.13026, DOI: 10.1111/epp.13026. [COBISS.SI-ID 205176579]

25. MEHLE, Nataša, BAJDE, Irena, BRODARIČ, Jakob, FOX, Adrian, KITEK, Miha, KUTNJAK, Denis, RAVNIKAR, Maja, VUČUROVIĆ, Ana. Voda in rastni substrat onesnaženi s tobamovirusi - vir okužbe rastlin. In: KUŠAR, Darja (ed.), JAMNIKAR CIGLENEČKI, Urška (ed.). 9. kongres Slovenskega mikrobiološkega društva : knjiga povzetkov : 14.–16. februar 2024. Ljubljana: Slovensko mikrobiološko društvo, 2024. Str. 128. ISBN 978-961-96562-0-4. https://smd2024.si/wp-content/uploads/2024/02/2024-02-12-knjiga-povzetkov-SMD_Compress.pdf. [COBISS.SI-ID 186668291]

26. MEHLE, Nataša, BAJDE, Irena, BRODARIČ, Jakob, FOX, Adrian, KITEK, Miha, GUTIÉRREZ-AGUIRRE, Ion, KUTNJAK, Denis, BAČNIK, Katarina, RAVNIKAR, Maja, VUČUROVIĆ, Ana. Water and soil contaminated with emerging tobamoviruses are the source of plant infections. In: TABAIN, Irena (ed.). Power of Viruses : programme and abstracts : September 25–28, 2024 Zadar, Croatia. Zagreb: Croatian Microbiological Society, 2024. Str. 81. https://hmd-cms.hr/power-of-viruses-2024/wp-content/uploads/abstract-book-PoV-2024-1.pdf. [COBISS.SI-ID 212476163]

27. VOGRINEC, Lana, BAČNIK, Katarina, BAČIČ, Martina, FOWKES, Aimee, LENGAR, Živa, HARJU, Valerie, ADAMS, Ian, FOX, Adrian, KUTNJAK, Denis. Aquatic plants harbour diverse viruses, including important crop pathogens. In: International Advances in Plant Virology 2025 : Murcia, Spain April 8th-11th 2025 : programme and abstract book. International Advances in Plant Virology 2025, Murcia, Spain April 8th-11th 2025. [Warwick: Association of Applied Biologists, 2025]. Str. 73-74. [COBISS.SI-ID 233193475]

28. MEHLE, Nataša, BAČNIK, Katarina, BAJDE, Irena, BRODARIČ, Jakob, FOX, Adrian, GUTIÉRREZ-AGUIRRE, Ion, KITEK, Miha, KUTNJAK, Denis, LOH, Yue Lin, MAKSIMOVIĆ, Olivera, RAVNIKAR, Maja, VOGEL, Elise, VOS, Christine, VUČUROVIĆ, Ana. Methods for effective early identification and prevention of ToBRFV. In: International Advances in Plant Virology 2025 : Murcia, Spain April 8th-11th 2025 : programme and abstract book. International Advances in Plant Virology 2025, Murcia, Spain April 8th-11th 2025. [Warwick: Association of Applied Biologists, 2025]. Str. 1-2. [COBISS.SI-ID 233190915]

29. VOGRINEC, Lana, BAČNIK, Katarina, BAČIČ, Martina, FOWKES, Aimee, LENGAR, Živa, HARJU, Valerie, ADAMS, Ian, FOX, Adrian, KUTNJAK, Denis. Unveiling plant virus diversity in aquatic plants through sequencing-based approaches : ViBioM, The International Virus Bioinformatics Meeting, 13–15 May 2025, Lisbon, Portugal. [COBISS.SI-ID 238351619]

30. MEHLE, Nataša, FOX, Adrian, TIBERINI, Antonio, ZIEBELL, Heiko. Vertical transmission of tomato viruses. In: MACDIARMID, Robin (ed.), BENHUR, Lee (ed.), BEER, Martin (ed.). Advances in virus research. 1st ed. London; Cambridge: Elsevier, 2025. Str. 105-168, ilustr., zvd. Advances in virus research series, vol. 123. ISBN 0-443-34493-0, ISBN 978-0-443-34493-0. https://doi.org/10.1016/bs.aivir.2025.08.003, DiRROS - Digital repository of Slovenian research organizations, DOI: 10.1016/bs.aivir.2025.08.003. [COBISS.SI-ID 250689027]

31. VOGRINEC, Lana, BAČNIK, Katarina, BAČIČ, Martina, MEHLE, Nataša, FOWKES, Aimee R., LENGAR, Živa, HARJU, Valerie, ADAMS, Ian, FOX, Adrian, KUTNJAK, Denis. Wild and globally traded ornamental aquatic plants harbor diverse plant viruses, including notable crop pathogens. Environmental microbiome. Oct. 2025, vol. 20, [article no.] 133, str. 1-23, ilustr. ISSN 2524-6372. https://doi.org/10.1186/s40793-025-00783-6, DiRROS - Digital repository of Slovenian research organizations, DOI: 10.1186/s40793-025-00783-6. [COBISS.SI-ID 254708739]

32. ROENHORST, Annelien J. W., ALTENBACH, Denise, BOTERMANS, Marleen, DELLA BARTOLA, Michele, FAGGIOLI, Francesco, FOX, Adrian, GAMBINI, Doris, GIESBERS, Anne, GRAUSGRUBER-GRÖGER, Sabine, HEJLOVA, Miroslava, MAVRIČ PLEŠKO, Irena, MEHLE, Nataša, RADIŠEK, Sebastjan, ROLLAND, Mathieu, MILANOVIĆ, Jasna, et al. Applying a systems approach to validation and proficiency testing in plant virology to meet ISO-17025 accreditation requirements. PhytoFrontiers™. Spletna izd. 2026, vol. <sprejeto v objavo>, iss. <sprejeto v objavo>, str. 1-33, ilustr. ISSN 2690-5442. https://apsjournals.apsnet.org/doi/10.1094/PHYTOFR-12-25-0139-P, DiRROS - Digital repository of Slovenian research organizations, DOI: 10.1094/PHYTOFR-12-25-0139-P. [COBISS.SI-ID 272208643]