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Roger Ros-Freixedes

Personal bibliography for the period 2017-2023

2017

1. ROS-FREIXEDES, Roger, GONEN, Serap, GORJANC, Gregor, HICKEY, John M. A method for allocating low-coverage sequencing resources by targeting haplotypes rather than individuals. Genetics selection evolution. [Online ed.]. 2017, vol. 49, no. 78, str. 1-17, ilustr. ISSN 1297-9686. https://link.springer.com/content/pdf/10.1186%2Fs12711-017-0353-y.pdf, DOI: 10.1186/s12711-017-0353-y. [COBISS.SI-ID 3985800]
2. GONEN, Serap, ROS-FREIXEDES, Roger, BATTAGIN, Mara, GORJANC, Gregor, HICKEY, John M. A method for the allocation of sequencing resources in genotyped livestock populations. Genetics selection evolution. [Online ed.]. 2017, vol. 49, no. 47, str. 1-16, ilustr. ISSN 1297-9686. https://gsejournal.biomedcentral.com/articles/10.1186/s12711-017-0322-5, DOI: 10.1186/s12711-017-0322-5. [COBISS.SI-ID 3944584]

2018

3. WHALEN, Andrew, GORJANC, Gregor, ROS-FREIXEDES, Roger, HICKEY, John M. Assessment of the performance of hidden Markov models for imputation in animal breeding. Genetics selection evolution. [Online ed.]. 2018, vol. 50, no. 44, str. 1-10. ISSN 1297-9686. https://gsejournal.biomedcentral.com/articles/10.1186/s12711-018-0416-8, DOI: 10.1186/s12711-018-0416-8. [COBISS.SI-ID 4136072]
4. WHALEN, Andrew, ROS-FREIXEDES, Roger, WILSON, David L., GORJANC, Gregor, HICKEY, John M. Hybrid peeling for fast and accurate calling, phasing, and imputation with sequence data of any coverage in pedigrees. Genetics selection evolution. [Online ed.]. 2018, vol. 50, no. 67, str. 1-15. ISSN 1297-9686. https://gsejournal.biomedcentral.com/articles/10.1186/s12711-018-0438-2, DOI: 10.1186/s12711-018-0438-2. [COBISS.SI-ID 4174728]
5. ROS-FREIXEDES, Roger, BATTAGIN, Mara, JOHNSSON, Martin, GORJANC, Gregor, MILEHAM, Alan J., ROUNSLEY, Steve D., HICKEY, John M. Impact of index hopping and bias towards the reference allele on accuracy of genotype calls from low-coverage sequencing. Genetics selection evolution. [Online ed.]. 2018, vol. 50, no. 64, str. 1-14. ISSN 1297-9686. https://gsejournal.biomedcentral.com/articles/10.1186/s12711-018-0436-4, DOI: 10.1186/s12711-018-0436-4. [COBISS.SI-ID 4174216]
6. GONEN, S., ROS-FREIXEDES, Roger, BATTAGIN, Mara, GORJANC, Gregor, HICKEY, John M. A method for the allocation of sequencing resources in genotyped livestock populations. In: Proceedings of the World Congress on Genetics Applied to Livestock Production, Auckland, New Zealand, 11-16 February 2018 : production digital archive. [s. l.: s. n.], 2018. Str. [1-7]. Genetic Gain - Breeding Strategies, 1. http://www.wcgalp.org/proceedings/2018/method-allocation-sequencing-resources-genotyped-livestock-populations. [COBISS.SI-ID 4136840]
7. ROS-FREIXEDES, Roger, GONEN, S., WHALEN, Andrew, SOMAVILLA, A., GONEN, S., BATTAGIN, Mara, JOHNSSON, Martin, GORJANC, Gregor, CHEN, Ching-Yi, CLEVELAND, Matthew A., KELLEY, J. A., CAMPBELL, Matt A., MILEHAM, Alan J., HICKEY, John M. Preliminary results from a large sequencing project in a pig breeding program. In: Proceedings of the World Congress on Genetics Applied to Livestock Production, Auckland, New Zealand, 11-16 February 2018 : production digital archive. [s. l.: s. n.], 2018. Str. [1-6]. Genetic Gain - Breeding Strategies, 1. http://www.wcgalp.org/proceedings/2018/preliminary-results-large-sequencing-project-pig-breeding-program. [COBISS.SI-ID 4137096]
8. JOHNSSON, Martin, ROS-FREIXEDES, Roger, GORJANC, Gregor, CAMPBELL, Matt A., NASWA, Sudhir, KELLY, Kimberly, LIGHTNER, Jonathan, ROUNSLEY, Steve D., HICKEY, John M. Sequence variation, evolutionary constraint, and selection at the CD163 gene in pigs. Genetics selection evolution. [Online ed.]. 2018, vol. 50, no. 69, str. 1-9. ISSN 1297-9686. https://gsejournal.biomedcentral.com/articles/10.1186/s12711-018-0440-8, DOI: 10.1186/s12711-018-0440-8. [COBISS.SI-ID 4174472]

2019

9. GOTTARDO, Paolo, GORJANC, Gregor, BATTAGIN, Mara, GAYNOR, Robert Chris, JENKO, Janez, ROS-FREIXEDES, Roger, WHITELAW, Bruce C.A., MILEHAM, Alan J., HERRING, William O., HICKEY, John M. A strategy to exploit surrogate sire technology in livestock breeding programs. G3. 2019, vol. 9, no. 1, str. 203-215, ilustr. ISSN 2160-1836. http://www.g3journal.org/content/ggg/9/1/203.full.pdf, DOI: 10.1534/g3.118.200890. [COBISS.SI-ID 4173960]

2020

10. ROS-FREIXEDES, Roger, WHALEN, Andrew, CHEN, Ching-Yi, GORJANC, Gregor, HERRING, William O., MILEHAM, Alan J., HICKEY, John M. Accuracy of whole-genome sequence imputation using hybrid peeling in large pedigreed livestock populations. Genetics selection evolution. [Online ed.]. 6. apr. 2020, vol. 52, art. 17, str. 1-15, ilustr. ISSN 1297-9686. https://gsejournal.biomedcentral.com/articles/10.1186/s12711-020-00536-8, DOI: 10.1186/s12711-020-00536-8. [COBISS.SI-ID 38869251]
11. ROS-FREIXEDES, Roger, WHALEN, Andrew, GORJANC, Gregor, MILEHAM, Alan J., HICKEY, John M. Evaluation of sequencing strategies for whole-genome imputation with hybrid peeling. Genetics selection evolution. [Online ed.]. 6. apr. 2020, vol. 52, art. 18, str. 1-19, ilustr. ISSN 1297-9686. https://gsejournal.biomedcentral.com/articles/10.1186/s12711-020-00537-7, DOI: 10.1186/s12711-020-00537-7. [COBISS.SI-ID 38871811]

2021

12. GOZALO-MARCILLA, Miguel, BUNTJER, Jaap B., JOHNSSON, Martin, BATISTA, Lorena G., DIEZ, Federico, WERNER, Christian R., CHEN, Ching-Yi, GORJANC, Gregor, MELLANBY, Richard J., HICKEY, John M., ROS-FREIXEDES, Roger. Genetic architecture and major genes for backfat thickness in pig lines of diverse genetic backgrounds. Genetics selection evolution. [Online ed.]. 22. sep. 2021, vol. 53, art. 76, str. 1-14, ilustr. ISSN 1297-9686. https://gsejournal.biomedcentral.com/articles/10.1186/s12711-021-00671-w, Repository of the University of Ljubljana – RUL , DOI: 10.1186/s12711-021-00671-w. [COBISS.SI-ID 82703363]
13. JOHNSSON, Martin, WHALEN, Andrew, ROS-FREIXEDES, Roger, GORJANC, Gregor, CHEN, Ching-Yi, HERRING, William O., DE KONING, Dirk-Jan, HICKEY, John M. Genetic variation in recombination rate in the pig. Genetics selection evolution. [Online ed.]. 25. jun. 2021, vol. 53, art. 54, str. 1-19, ilustr. ISSN 1297-9686. https://gsejournal.biomedcentral.com/articles/10.1186/s12711-021-00643-0, DOI: 10.1186/s12711-021-00643-0. [COBISS.SI-ID 70365187]

2022

14. ROS-FREIXEDES, Roger, JOHNSSON, Martin, WHALEN, Andrew, CHEN, Ching-Yi, VALENTE, Bruno D., HERRING, William O., GORJANC, Gregor, HICKEY, John M. Genomic prediction using whole-genome sequence data in intensely selected pig lines. In: The 12th World Congress on Genetics Applied to Livestock Production : Rotterdam, The Netherlands, 3 - 8 July 2022. [Rotterdam]: WCGALP. 2022, str. 1-4, ilustr. https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/54_012.pdf. [COBISS.SI-ID 125219331]
15. ROS-FREIXEDES, Roger, JOHNSSON, Martin, WHALEN, Andrew, CHEN, Ching-Yi, VALENTE, Bruno D., HERRING, William O., GORJANC, Gregor, HICKEY, John M. Genomic prediction with whole-genome sequence data in intensely selected pig lines. Genetics selection evolution. [Online ed.]. 2022, vol. 54, [article no.] 65, str. 1-18, ilustr. ISSN 1297-9686. https://gsejournal.biomedcentral.com/articles/10.1186/s12711-022-00756-0, DOI: 10.1186/s12711-022-00756-0. [COBISS.SI-ID 142512643]
16. DESIRE, Suzzane, JOHNSSON, Martin, ROS-FREIXEDES, Roger, CHEN, Ching-Yi, HERRING, William O., GORJANC, Gregor, MELLANBY, Richard J., HICKEY, John M., JUNGNICKEL, Melissa. Investigation of GWAS variants associated with loin depth in commercial pigs. In: The 12th World Congress on Genetics Applied to Livestock Production : Rotterdam, The Netherlands, 3 - 8 July 2022. [Rotterdam]: WCGALP. 2022, str. 1-4, ilustr. https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/66_011.pdf. [COBISS.SI-ID 125137667]
17. ROS-FREIXEDES, Roger, VALENTE, Bruno D., CHEN, Ching-Yi, HERRING, William O., GORJANC, Gregor, HICKEY, John M., JOHNSSON, Martin. Rare and population-specific functional variation across pig lines. Genetics selection evolution. [Online ed.]. 2022, vol. 54, art. 39, str. 1-16, ilustr. ISSN 1297-9686. https://gsejournal.biomedcentral.com/articles/10.1186/s12711-022-00732-8, DOI: 10.1186/s12711-022-00732-8. [COBISS.SI-ID 118590979]

2023

18. DESIRE, Suzzane, JOHNSSON, Martin, ROS-FREIXEDES, Roger, CHEN, Ching-Yi, HOLL, Justin, HERRING, William O., GORJANC, Gregor, MELLANBY, Richard J., HICKEY, John M., JUNGNICKEL, Melissa. A genome-wide association study for loin depth and muscle pH in pigs from intensely selected purebred lines. Genetics selection evolution. [Online ed.]. 2023, vol. 55, article no. 42, str. 1-13, ilustr. ISSN 1297-9686. https://gsejournal.biomedcentral.com/articles/10.1186/s12711-023-00815-0, DOI: 10.1186/s12711-023-00815-0. [COBISS.SI-ID 160555011]
19. GORJANC, Gregor, OBŠTETER, Jana, FORTUNA, Gabriela Mafra, ROS-FREIXEDES, Roger, JOHNSSON, Martin, POCRNIĆ, Ivan. Storing and analysing a million genomes on a desktop computer. In: MIGLIOR, F. (ed.). Book of abstracts of the 74th Annual Meeting of the European Federation of Animal Science : Lyon, France, 26 August - 1 September, 2023. Wageningen: Wageningen Academic Publishers, 2023. Str. 162. EAAP book of Abstracts, no. 29. ISBN 978-90-8686-384-6. ISSN 1382-6077. [COBISS.SI-ID 164440323]
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