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Petra Papež

Personal bibliography for the period 2015-2025

2015

1. KRŽIŠNIK, Klemen, AUPIČ, Jana, PAPEŽ, Petra, DLOUHY, Matjaž, ŠINKOVEC, Aljaž, PRIBEC, Ivan, STRNIŠA, Filip, PRAŠNIKAR, Anže, KOMAVEC, Mojca, SLEJKO, Ema. Uporaba računalniških orodij pri načrtovanju in optimizaciji procesov v kemiji in kemijskem inženirstvu : končno poročilo o izvedenih projektnih aktivnostih : projekt Po kreativni poti do praktičnega znanja, Javni sklad Republike Slovenije za razvoj kadrov in štipendije, za obdobje od 1. 2. 2015 do 31. 7. 2015. Ljubljana: Univerza v Ljubljani, Fakulteta za kemijo in kemijsko tehnologijo, 2015. 9 f. [COBISS.SI-ID 1536851907]

2016

2. PAPEŽ, Petra. Monte Carlo simulacija dvodimenzionalnih modelov alkoholov : diplomsko delo na univerzitetnem študiju Kemija. Ljubljana: [P. Papež], 2016. XIV, 32 str., ilustr. [COBISS.SI-ID 1537130435]

2017

3. PAPEŽ, Petra, URBIČ, Tomaž. Simple models of alcohols. In: VILFAN, Mojca (ed.). Liquids 2017 : book of abstracts : posters. [S. l.: s. n., 2017]. Str. 62. http://liquids2017.ijs.si/info/PosterAbstracts.pdf. [COBISS.SI-ID 1537472963]

2018

4. PAPEŽ, Petra. Hidratacija nižjih alkoholov z uporabo teoretičnih metod : magistrsko delo. Ljubljana: [P. Papež], 2018. XXIV, 81 str., ilustr. [COBISS.SI-ID 1537926595]

2021

5. PRAPROTNIK, Matej, POTISK, Tilen, PAPEŽ, Petra. Večskalne simulacije mehke in biološke snovi : prispevek na delavnici Računske in statistične metode v kemiji, 19-21 oktober 2021. [COBISS.SI-ID 82931459]

2022

6. PAPEŽ, Petra, PRAPROTNIK, Matej. Dissipative particle dynamics simulation of ultrasound propagation through liquid water : 10th International Conference on Multiscale Materials Modeling (MMM 2022) in Baltimore, Maryland, USA, October 2-7, 2022. [COBISS.SI-ID 128469763]
7. PAPEŽ, Petra, PRAPROTNIK, Matej. Dissipative particle dynamics simulation of ultrasound propagation through liquid water. Journal of chemical theory and computation. 10. Jan. 2022, [vol.] 18, [no.] 2, str. 1227–1240, ilustr. ISSN 1549-9626. https://pubs.acs.org/doi/10.1021/acs.jctc.1c01020, DiRROS - Digital repository of Slovenian research organizations, DOI: 10.1021/acs.jctc.1c01020. [COBISS.SI-ID 95441411]
8. PAPEŽ, Petra, URBIČ, Tomaž. Simple two-dimensional models of alcohols. Physical review. E. May 2022, vol. 105, iss. 5, [article no.] 054608, str. 1-11, ilustr. ISSN 2470-0045. https://journals.aps.org/pre/abstract/10.1103/PhysRevE.105.054608, DOI: 10.1103/PhysRevE.105.054608. [COBISS.SI-ID 110042371]

2023

9. PAPEŽ, Petra, MERZEL, Franci, PRAPROTNIK, Matej. Rotational dynamics of a protein under shear flow studied by the eckart frame formalism. The journal of physical chemistry. B. [Online ed.]. 2023, vol. 127, iss. 33, str. 7231-7243. ISSN 1520-5207. https://pubs.acs.org/doi/10.1021/acs.jpcb.3c02324, DiRROS - Digital repository of Slovenian research organizations, Repository of the University of Ljubljana – RUL , DOI: 10.1021/acs.jpcb.3c02324. [COBISS.SI-ID 163312899]
10. PAPEŽ, Petra, MERZEL, Franci, PRAPROTNIK, Matej. Sub-THz acoustic excitation of protein motion. Journal of chemical physics. [Online ed.]. 7 Oct. 2023, vol. 159, iss. 13, [article no.] 135101, str. 1-9. ISSN 1089-7690. https://pubs.aip.org/aip/jcp/article/159/13/135101/2913900/Sub-THz-acoustic-excitation-of-protein-motion, DiRROS - Digital repository of Slovenian research organizations, Repository of the University of Ljubljana – RUL , DOI: 10.1063/5.0163801. [COBISS.SI-ID 170525187]

2024

11. POTISK, Tilen, NTARAKAS, Nikolaos, PAPEŽ, Petra, PRAPROTNIK, Matej. Digital twin for ultrasound through OBMD plugin for LAMMPS : MultiXscale - CECAM webinar, October 17, 2024. https://www.youtube.com/watch?v=7BD4HLICAxw. [COBISS.SI-ID 227970563]
12. PAPEŽ, Petra. Multiscale simulation of fluid flow interaction with biological macromolecules : doctoral thesis. Ljubljana: [P. Papež], 2024. XIX, 135 str., ilustr. Repository of the University of Ljubljana – RUL . [COBISS.SI-ID 199420675]

2025

13. PRAPROTNIK, Matej (editor), PAPEŽ, Petra (editor), NTARAKAS, Nikolaos (editor). Modeling & simulation of fluid-structure interactions across scales : CECAM workshop : book of abstracts : National Institute of Chemistry, Ljubljana, Slovenia April 8, 2025 - April 11, 2025. Ljubljana: Kemijski inštitut, 2025. 1 spletni vir (1 datoteka PDF (55 str.)), ilustr. ISBN 978-961-7238-09-9. https://www.cecam.org/workshop-details/modeling-simulation-of-fluid-structure-interactions-across-scales-1435, https://members.cecam.org/storage/booklet_files/book_of_abstracts-1743769353.pdf, http://www.dlib.si/details/URN:NBN:SI:doc-ROJSPLNF. [COBISS.SI-ID 231451395]
14. LAH, Maša, NTARAKAS, Nikolaos, POTISK, Tilen, PAPEŽ, Petra, PRAPROTNIK, Matej. Open-boundary molecular dynamics of ultrasound using supramolecular water models. Journal of chemical physics. [Online ed.]. 14 Jan. 2025, vol. 162, iss. 2, [article no.] 024103, str. 1-10, ilustr. ISSN 1089-7690. https://pubs.aip.org/aip/jcp/article/162/2/024103/3329569/Open-boundary-molecular-dynamics-of-ultrasound, DiRROS - Digital repository of Slovenian research organizations, DOI: 10.1063/5.0238348. [COBISS.SI-ID 222963203]
15. LAH, Maša, NTARAKAS, Nikolaos, POTISK, Tilen, PAPEŽ, Petra, PRAPROTNIK, Matej. Open-boundary molecular dynamics of ultrasound using supramolecular water models. In: HARISCH, Damjan (ed.). ASHPC25 : Austrian-Slovenian HPC Meeting 2025 : Rimske Terme, Slovenia, 19-22 May 2025. Vienna: EuroCC, cop. 2025. Str. 62. ISBN 978-3-200-10466-2. [COBISS.SI-ID 268932099]
16. LAH, Maša, NTARAKAS, Nikolaos, POTISK, Tilen, PAPEŽ, Petra, PRAPROTNIK, Matej. Open-boundary molecular dynamics of ultrasound using supramolecular water models. In: PRAPROTNIK, Matej (ed.), PAPEŽ, Petra (ed.), NTARAKAS, Nikolaos (ed.). Modeling & simulation of fluid-structure interactions across scales : CECAM workshop : book of abstracts : National Institute of Chemistry, Ljubljana, Slovenia April 8, 2025 - April 11, 2025. Ljubljana: Kemijski inštitut, 2025. Str. 47. ISBN 978-961-7238-09-9. https://members.cecam.org/storage/booklet_files/book_of_abstracts-1743769353.pdf. [COBISS.SI-ID 268939523]
17. PAPEŽ, Petra, MERZEL, Franci, PRAPROTNIK, Matej. Protein rotational and vibrational dynamics unveiled using OBMDmethod. In: PRAPROTNIK, Matej (ed.), PAPEŽ, Petra (ed.), NTARAKAS, Nikolaos (ed.). Modeling & simulation of fluid-structure interactions across scales : CECAM workshop : book of abstracts : National Institute of Chemistry, Ljubljana, Slovenia April 8, 2025 - April 11, 2025. Ljubljana: Kemijski inštitut, 2025. Str. 48. ISBN 978-961-7238-09-9. https://members.cecam.org/storage/booklet_files/book_of_abstracts-1743769353.pdf. [COBISS.SI-ID 274279171]
18. PAPEŽ, Petra, MERZEL, Franci, PRAPROTNIK, Matej. Vzbujanje lastnih načinov nihanja proteina s teraherčnimi akustičnimi valovi. In: CERKVENIK, Eva (ed.). 6. dneva biofizike 2025 : zbornik povzetkov : Celjski dom v Celju, 5. in 6. junij 2025. Ljubljana: Društvo biofizikov Slovenije, 2025. Str. [30]. https://www.drustvo-biofizikov.si/files/2025/06/Zbornik-DBS-Celje-2025.pdf. [COBISS.SI-ID 274279427]
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A source of bibliographic data: shared data base COBISS.SI/COBIB.SI, 7. 10. 2026