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Neža Omersa

Personal bibliography for the period 2012-2024

2012

1. OMERSA, Neža, REŽEN, Tadeja, KOMEL, Radovan. Erythropoietin receptor expression regulation in a cell model of non-hematopoietic origin. In: HUDLER, Petra (ed.), VIDETIČ PASKA, Alja (ed.), JUVAN, Peter (ed.). Molekularna medicina in biotehnologija = Molecular medicine and biotechnology : book of abstracts. Simpozij z mednarodno udele bo ob 40. obletnici In tituta za biokemijo in 20. obletnici Medicinskega centra za molekularno biologijo = International Symposium at 40th Anniversary of Institute of Biochemistry and_ 20th Anniversary of Medical Centre for Molecular Biology, Ljubljana, 27-29 June 2012. Ljubljana: Inštitut za biokemijo, Medicinska fakulteta: = Institute of Biochemistry, Faculty of Medicine, 2012. Str. 78. ISBN 978-961-267-050-4. [COBISS.SI-ID 30040537]
2. OMERSA, Neža. Razvoj metod za in vitro proučevanje tkivnozaščitnih učinkov eritropoetina v celičnem modelu : magistrsko delo : magistrski študij - 2. stopnja = Developing methods for in vitro studies of tissue protective effects of erythropoietin in a cell model : M. Sc. Thesis : Master Study Programmes. Ljubljana: [N. Juvan], 2012. XII, 74 f., [1] f. pril., ilustr. http://www.digitalna-knjiznica.bf.uni-lj.si/biologija/du2_juvan_neza.pdf, Repository of the University of Ljubljana – RUL . [COBISS.SI-ID 2714959]

2013

3. OMERSA, Neža, ANDERLUH, Gregor. Ribosome display - delicate steps in the initial stages of the technique. In: Protein-Protein Interaction Conference, October 24-25, 2013, San Diego, CA. San Diego: [s. n.]. http://www.gtcbio.com/sd-open/ppi/. [COBISS.SI-ID 5383194]
4. OMERSA, Neža, ANDERLUH, Gregor. Ribosome display as a potent technique for selection of novel protein binders : optimization of initial steps for scFv library preparation. In: PETAN, Toni (ed.), ŠPES, Aleš (ed.). Book of abstracts. 10th Meeting of the Slovenian Biochemical Society with International Participation, Ljubljana, Slovenia, September 15-18, 2013. Ljubljana: Slovenian Biochemical Society, 2013. Str. 104. ISBN 978-961-91651-8-8. [COBISS.SI-ID 30817497]

2014

5. OMERSA, Neža, ANDERLUH, Gregor. High-throughput method for searching of binders and modifiers of pore forming toxins activity. In: Pore-forming toxins : a meeting in memory of Gianfranco Menestrina, 28-30 August 2014, Trento, Italy. [S. l.: s. n.], 2014. Str. 42. [COBISS.SI-ID 37558277]
6. OMERSA, Neža, ANDERLUH, Gregor. Interakcije med proteini, ki tvorijo pore in umetno načrtovanimi proteinskimi ogrodji. In: ANDERLUH, Gregor (ed.), KRAŠEVEC, Nada (ed.). Molekulske interakcije : 10 let Infrastrukturnega centra za raziskave molekulskih interakcij : mini simpozij 2014, 3. 12. 2014, Ljubljana. Ljubljana: Laboratorij za molekularno biologijo in nanobiotehnologijo, Kemijski inštitut, 2014. Str. 27, ilustr. ISBN 978-961-6104-27-2. [COBISS.SI-ID 5615386]
7. BEDINA ZAVEC, Apolonija, KRAŠEVEC, Nada, LENARČIČ, Jelka, MOHORIČ, Luka, KOŠIR, Nika, TKALEC, Kristijan, ZABRET, Blaž, ROJKO, Nejc, OMERSA, Neža, CAJNKO, Miša Mojca, JAMNIK, Maja, TOMŠIČ, Tea, DEČKO, Urška, ANDERLUH, Gregor. Poletna delavnica Genetika : 25.8.-29.8.2014, Kemijski inštitut, Ljubljana, Laboratorij za molekularno biologijo in nanobiotehnologijo. Ljubljana: Kemijski inštitut, 2014. II, 25 str., ilustr. [COBISS.SI-ID 5537050]

2015

8. KRANJC, Nace, OMERSA, Neža, ŠAKANOVIĆ, Aleksandra, ANDERLUH, Gregor. Ugotavljanje specifičnosti vezave perfringolizina O na lipidne membrane s pomočjo sekvenciranja z nano poro. In: ANDERLUH, Gregor (ed.), KRAŠEVEC, Nada (ed.). Proteinske pore, sekvenciranje in bioinformatika : mini simpozij 2015, [5. 11. 2015 Ljubljana]. Ljubljana: Laboratorij za molekularno biologijo in nanobiotehnologijo, Kemijski inštitut, 2015. Str. 9, ilustr. ISBN 978-961-6104-29-6. [COBISS.SI-ID 5814298]

2016

9. ŠAKANOVIĆ, Aleksandra, OMERSA, Neža, BEDINA ZAVEC, Apolonija, PODOBNIK, Marjetka. Priprava rekombinantnega proteina : predavanje na 22. slovenskem festivalu znanosti z mednarodno udeležbo "opazujem, raziskujem, razlagam" Ljubljana, 27.-29. 09. 2016. [COBISS.SI-ID 6402330]

2017

10. OMERSA, Neža, KOZOROG, Mirijam, KISOVEC, Matic, PODOBNIK, Marjetka, ANDERLUH, Gregor. Proteinske domene za regulacijo aktivnosti mutanta listeriolizina O : patent : SI25055 (A), 2017-03-31. Ljubljana: Urad RS za intelektualno lastnino, 2017. 11 str., 2 str. pril., ilustr. [COBISS.SI-ID 5902362]
patent family: P-201500201, 2015-08-28

2019

11. ANDERLUH, Gregor, OMERSA, Neža, ADEN, Saša. Development of protein logic gates on lipid membranes based on poreforming toxins. In: The 44th FEBS Congress from Molecules to Living Systems, 6-11 July 2019, Krakow, Poland. Krakow: [s. n.]. 2019, str. [1]. https://2019.febscongress.org/abstract_preview.aspx?idAbstractEnc=4424170094097100094092424170. [COBISS.SI-ID 6787098]
12. OMERSA, Neža, PODOBNIK, Marjetka, ANDERLUH, Gregor. Inhibition of pore-forming proteins. Toxins : Elektronski vir. Sep. 2019, vol. 11, iss. 9, str. 545-1-545-22, ilustr. ISSN 2072-6651. https://www.mdpi.com/2072-6651/11/9/545, DOI: 10.3390/toxins11090545. [COBISS.SI-ID 6724634]
13. OMERSA, Neža, ADEN, Saša, ANDERLUH, Gregor. Pore-forming toxin as an operator of logic gates. In: ANDERLUH, Gregor (ed.), PIRC, Katja (ed.), SEPČIĆ, Kristina (ed.). Recent topics in toxinology : 7. 6. 2019 Ljubljana : [book of abstracts]. Recent topics in toxinology 2019. Ljubljana: Department of Molecular Biology and Nanobiotechnology, National Institute of Chemistry, 2019. Str. 36, ilustr. ISBN 978-961-6104-44-9. [COBISS.SI-ID 6655514]
14. OMERSA, Neža, ADEN, Saša, ANDERLUH, Gregor. Protein logic gate operation on lipid vesicles. In: KISOVEC, Matic (ed.). Book of abstracts = Knjiga povzetkov. 13th Meeting of the Slovenian Biochemical Society with International Participation = 13. srečanje Slovenskega biokemijskega društva z mednarodno udeležbo, Dobrna, 24 - 27 September 2019. Ljubljana: Slovenian Biochemical Society, 2019. Str. 23. ISBN 978-961-93879-8-6. [COBISS.SI-ID 6725402]

2020

15. OMERSA, Neža, ADEN, Saša, KISOVEC, Matic, PODOBNIK, Marjetka, ANDERLUH, Gregor. Design of protein logic gate system operating on lipid membranes. ACS synthetic biology. 2020, vol. 9, iss. 2, str. 316-328, ilustr. ISSN 2161-5063. https://pubs.acs.org/doi/10.1021/acssynbio.9b00340, http://dirros.openscience.si/IzpisGradiva.php?id=12762&lang=slv, DiRROS - Digital repository of Slovenian research organizations, DOI: 10.1021/acssynbio.9b00340. [COBISS.SI-ID 21148419]
16. ŠAKANOVIĆ, Aleksandra, KRANJC, Nace, OMERSA, Neža, PODOBNIK, Marjetka, ANDERLUH, Gregor. More than one way to bind to cholesterol : atypical variants of membrane-binding domain of perfringolysin O selected by ribosome display. RSC advances. 2020, vol. 10, iss. 63, str. 38678-38682. ISSN 2046-2069. https://pubs.rsc.org/en/content/articlelanding/2020/RA/D0RA06976K#!divAbstract, DOI: 10.1039/D0RA06976K. [COBISS.SI-ID 40933635]
17. LAURIA, Fabio, BERNABÒ, Paola, TEBALDI, Toma, GROEN, Ewout Joan Nicolaas, PERENTHALER, Elena, MANISCALCO, Federica, ROSSI, Annalisa, DONZEL, Deborah, CLAMER, Massimiliano, MARCHIORETTO, Marta, OMERSA, Neža, ORRI, Julia, DALLA SERRA, Mauro, ANDERLUH, Gregor, QUATTRONE, Alessandro, INGA, Alberto, GILLINGWATER, Thomas Henry, VIERO, Gabriella. SMN-primed ribosomes modulate the translation of transcripts related to spinal muscular atrophy. Nature cell biology. Oct. 2020, iss. 10, vol. 22, str. 1239-1251, ilustr. ISSN 1465-7392. https://www.nature.com/articles/s41556-020-00577-7, DOI: 10.1038/s41556-020-00577-7. [COBISS.SI-ID 30104323]
18. BEDINA ZAVEC, Apolonija, OMERSA, Neža, DE MARCO, Ario, JAMNIK, Maja, ŠAKANOVIĆ, Aleksandra, ANDERLUH, Gregor, PODOBNIK, Marjetka. Using miscroscale thermophoresis and surface plasmon resonance to measure the interactions of extracellular vesicles. In: ISEV2020 abstract book. 9th Annual Meeting of the International Society for Extracellular Vesicles in Philadelphia, Pennsylvania, May 20-24, 2020. [S. l.]: Taylor & Francis, 2020. Str. 203. Journal of extracellular vesicles, vol. 9, sup. 1 (2020). ISSN 2001-3078. https://www.tandfonline.com/doi/pdf/10.1080/20013078.2020.1784511. [COBISS.SI-ID 23680003]
19. OMERSA, Neža. Vpeljava tehnike predstavitve na ribosomih za proučevanje interakcij proteinov z membranami : doktorska disertacija = Implementation of ribosome display technique for studying protein-membrane interactions. Ljubljana: [N. Omersa], 2020. XIV, 127 f., ilustr. https://repozitorij.uni-lj.si/IzpisGradiva.php?id=121662&lang=slv, Repository of the University of Ljubljana – RUL , http://www.dlib.si/details/URN:NBN:SI:doc-NDS91G6X. [COBISS.SI-ID 37213955]

2021

20. OMERSA, Neža, ŠAKANOVIĆ, Aleksandra, KRANJC, Nace, ANDERLUH, Gregor. Altering the cholesterol selectivity of cholesterol-dependent cytolysins with ribosome display technique. In: Molecules of life : towards new horizons : FEBS 2021 : the 45th FEBS Congress : 3-8 July 2021, Ljubljana, Slovenia : virtual : abstracts. [S. l.]: Federation of European Biochemical Societies. 2021, str. [1]. https://2021.febscongress.org/abstract_preview.aspx?idAbstractEnc=4424170094100096091093424170. [COBISS.SI-ID 70472707]
21. OMERSA, Neža. Measuring molecular interactions. [COBISS.SI-ID 96616195]
22. LAINŠČEK, Duško, FINK, Tina, FORSTNERIČ, Vida, HAFNER BRATKOVIČ, Iva, OREHEK, Sara, STRMŠEK, Žiga, MANČEK KEBER, Mateja, PEČAN, Peter, ESIH, Hana, MALENŠEK, Špela, AUPIČ, Jana, DEKLEVA, Petra, PLAPER, Tjaša, VIDMAR, Sara, KADUNC POLAJNAR, Lucija, BENČINA, Mojca, OMERSA, Neža, ANDERLUH, Gregor, POJER, Florence, LAU, Kelvin, HACKER, David, CORREIA, Bruno E., PETERHOFF, David, WAGNER, Ralf, BERGANT, Valter, HERRMANN, Alexander, PICHLMAIR, Andreas, JERALA, Roman. A nanoscaffolded spike-RBD vaccine provides protection against SARS-CoV-2 with minimal anti-scaffold response. Vaccines. May 2021, vol. 9, iss. 5, [article no.] 431, str. 1-21. ISSN 2076-393X. https://www.mdpi.com/2076-393X/9/5/431, DOI: 10.3390/vaccines9050431. [COBISS.SI-ID 62539779]

2022

23. LEBEN ZUPET, Katja, STRMŠEK, Žiga, LEBAR, Tina, VERBIČ, Anže, DRAGOVAN, Matej, OMERSA, Neža, ANDERLUH, Gregor, JERALA, Roman. Binding of the transcription activator-like effector augments transcriptional regulation by another transcription factor. Nucleic acids research. 7 Jun. 2022, vol. 50, iss. 11, str. 6562–6574, ilustr. ISSN 0305-1048. https://academic.oup.com/nar/article/50/11/6562/6603662, DOI: 10.1093/nar/gkac454. [COBISS.SI-ID 120903171]
24. OMERSA, Neža, ŠAKANOVIĆ, Aleksandra, ANDERLUH, Gregor. Interactions between membranes and pore-forming toxins. In: 1st MOSBRI Scientific Conference : 20th-22nd June 2022, Institut Pasteur, Paris : programme book : showcasing how our integrated network can tacle an unusually wide variety of life science research questions. Paris: Institut Pasteur, 2022. Str. 37. https://www.mosbri.eu/events/conferences/paris-2022/. [COBISS.SI-ID 125007875]
25. OMERSA, Neža, PIRC, Katja, KISOVEC, Matic, ANDERLUH, Gregor. Molecular interactions in the Department of Molecular Biology and Nanobiotechnology. In: 1st MOSBRI Scientific Conference : 20th-22nd June 2022, Institut Pasteur, Paris : programme book : showcasing how our integrated network can tacle an unusually wide variety of life science research questions. Paris: Institut Pasteur, 2022. Str. 60. https://www.mosbri.eu/events/conferences/paris-2022/. [COBISS.SI-ID 125012483]
26. ŠOLINC, Gašper, ŠVIGELJ, Tomaž, OMERSA, Neža, SNOJ, Tina, PIRC, Katja, ŽNIDARŠIČ, Nada, YAMAJI-HASEGAWA, Akiko, KOBAYASHI, Toshihide, ANDERLUH, Gregor, PODOBNIK, Marjetka. Pore-forming moss protein bryoporin is structurally and mechanistically related to actinoporins from evolutionarily distant cnidarians. Journal of biological chemistry. Spletna izd. 2022, vol. 298, iss. 10, str. 1-15, ilustr. ISSN 1083-351X. https://www.jbc.org/article/S0021-9258(22)00898-5/fulltext#%20, DiRROS - Digital repository of Slovenian research organizations, DOI: 10.1016/j.jbc.2022.102455. [COBISS.SI-ID 123357187]
27. RAJH, Eva, GRADIŠAR, Helena, LJUBETIČ, Ajasja, OMERSA, Neža, JERALA, Roman. Using Rosetta to increase solubility and prevent aggregation of M. amurensis seed leucoagglutinin. In: European Rosettacon on protein structure prediction and design : Warsaw, 10-13 May 2022 : book of abstracts. [Warsaw: s. n.], 2022. Str. [1]. [COBISS.SI-ID 187154179]

2024

28. OMERSA, Neža. Bioremediacija tal, onesnaženih s težkimi kovinami. In: VRHUNC, Veronika (ed.), KRAMAR, Kaja (ed.). Izzivi trajnostnega razvoja : konferenca 2023 : 16. november 2023, Ljubljanska cesta 30, Kranj, Slovenija : [zbornik prispevkov]. Elektronska izd. Kranj: B&B Visoka šola za trajnostni razvoj, 2024. Str. 111-116, ilustr. ISBN 978-961-96632-1-9. https://bb.si/f/img/File/Zborniki/FINAL_Zbornik-Izzivi-trajnostnega-razvoja-IV.pdf. [COBISS.SI-ID 209577475]
29. ŠAKANOVIĆ, Aleksandra, KRANJC, Nace, OMERSA, Neža, ADEN, Saša, KEŽAR, Andreja, KISOVEC, Matic, BEDINA ZAVEC, Apolonija, CASERMAN, Simon, GILBERT, Robert J., PODOBNIK, Marjetka, CRNKOVIĆ, Ana, ANDERLUH, Gregor. In vitro evolution driven by epistasis reveals alternative cholesterol-specific binding motifs of perfringolysin O. Journal of biological chemistry. Spletna izd. Sep. 2024, vol. 300, iss. 9, [article no.] 107664, str. 1-16, ilustr. ISSN 1083-351X. https://www.sciencedirect.com/science/article/pii/S0021925824021653, DiRROS - Digital repository of Slovenian research organizations, DOI: 10.1016/j.jbc.2024.107664. [COBISS.SI-ID 207174915]
30. KULMA, Magdalena, ŠAKANOVIĆ, Aleksandra, BEDINA ZAVEC, Apolonija, CASERMAN, Simon, OMERSA, Neža, ŠOLINC, Gašper, OREHEK, Sara, HAFNER BRATKOVIČ, Iva, KUHAR, Urška, SLAVEC, Brigita, KRAPEŽ, Uroš, OCEPEK, Matjaž, KOBAYASHI, Toshihide, KWIATKOWSKA, Katarzyna, JERALA, Roman, PODOBNIK, Marjetka, ANDERLUH, Gregor. Sequestration of membrane cholesterol by cholesterol-binding proteins inhibits SARS-CoV-2 entry into Vero E6 cells. Biochemical and biophysical research communications. 5 Jul. 2024, vol. 716, [article no.] 149954, str. 1-16, ilustr. ISSN 1090-2104. https://www.sciencedirect.com/science/article/pii/S0006291X2400490X, Repository of the University of Ljubljana – RUL , DiRROS - Digital repository of Slovenian research organizations, DOI: 10.1016/j.bbrc.2024.149954. [COBISS.SI-ID 194174467]
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A source of bibliographic data: shared data base COBISS.SI/COBIB.SI, 15. 9. 2026