COBISS Co-operative Online Bibliographic system & services COBISS

Amrita Roy Choudhury

Personal bibliography for the period 2009-2019

2009

1. NOVIČ, Marjana, ROY CHOUDHURY, Amrita. Chemometrics exploration of trans membrane proteins available in the public data bases. From statistical models towards structure and mechanism of transport. In: Fifth International symposium on computational methods in toxicology and pharmacology integrating internet resources : CMTPI-2009 : abstract book : Istanbul, Turkey, 4-8 July 2009. [S.l.: s.n.], 2009. Str. 55. [COBISS.SI-ID 4193306]
2. ROY CHOUDHURY, Amrita, NOVIČ, Marjana. Clustering of protein transmembrane regions using chemometric tools. In: Slovenski kemijski dnevi 2009, Maribor, 24. in 25. september 2009. [Maribor]: FKKT, [2009]. 5 str. ISBN 978-961-248-173-5. [COBISS.SI-ID 4377370]
3. ROY CHOUDHURY, Amrita, NOVIČ, Marjana. Data-driven model for the prediction of protein transmembrane regions. SAR and QSAR in environmental research. 2009, vol. 20, no. 7/8, str. 741-754. ISSN 1062-936X. [COBISS.SI-ID 4344090]
4. ROY CHOUDHURY, Amrita, NOVIČ, Marjana. A novel chemometric model for protein transmembrane region prediction. In: GLAVIČ, Peter (ed.), BRODNJAK-VONČINA, Darinka (ed.). Zbornik povzetkov referatov s posvetovanja. Maribor: FKKT, 2009. Str. 88. ISBN 978-961-248-174-2. [COBISS.SI-ID 4273946]
5. ROY CHOUDHURY, Amrita, NOVIČ, Marjana. Prediction of protein transmembrane regions from sequence information - a chemometrics exploration of transmembrane proteins. In: Fifth International symposium on computational methods in toxicology and pharmacology integrating internet resources : CMTPI-2009 : abstract book : Istanbul, Turkey, 4-8 July 2009. [S.l.: s.n.], 2009. Str. 68. [COBISS.SI-ID 4193562]
6. NOVIČ, Marjana, ROY CHOUDHURY, Amrita, ŽUPERL, Špela, PASSAMONTI, Sabina. Trans membrane proteins - structural studies and inhibition models. In: HÉBERGER, Károly (ed.). Conferentia chemometrica 2009 : Siofok, September 27-30, 2009 : [book of abstracts]. Budapest: Hungarian Chemical Society, 2009. 1 str. ISBN 978-963-9319-98-1. [COBISS.SI-ID 4274970]

2010

7. BORŠTNAR, Rok, ROY CHOUDHURY, Amrita, STARE, Jernej, NOVIČ, Marjana, MAVRI, Janez. Calculation of pK [sub] a values of carboxylic acids : application to bilirubin. Journal of Molecular Structure. Theochem. [Print ed.]. 2010, vol. 947, no. 1-3, str. 76-82. ISSN 0166-1280. http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TGT-4Y9SVMB-1&_user=4776866&_coverDate=05%2F15%2F2010&_rdoc=1&_fmt=high&_orig=search&_sort=d&_docanchor=&view=c&_searchStrId=1269005483&_rerunOrigin=google&_acct=C000033658&_version=1&_urlVersion=0&_userid=4776866&md5=0701bd8658482289c7012716c8010140, DOI: 10.1016/j.theochem.2010.01.043. [COBISS.SI-ID 4355610]
8. ROY CHOUDHURY, Amrita, NOVIČ, Marjana. A chemometric approach for transmembrane region prediction. In: BUYDENS, Lutgarde (ed.). Book of abstracts : CAC 2010. Twelfth International Conference on Chemometrics in Analytical Chemistry, 18-21 October 2010, Antwerp, Belgium. Antwerpen: Universitet Antwerpen, 2010. Str. 109. [COBISS.SI-ID 4546074]
9. ROY CHOUDHURY, Amrita. Protein TM regions prediction : a chemometric exploration : referat na 6th Indo-US Workshop on Mathematical Chemistry, 8-10. 1. 2010, Kolkata, India. Kolkata: [s. n.], 2010. [COBISS.SI-ID 4558874]
10. ROY CHOUDHURY, Amrita, NOVIČ, Marjana. Protein transmembrane regions : prediction and statistical analysis. In: SCHOMBURG, Dietmar (ed.). Short papers and poster abstracts : GCB 2010. German Conference on Bioinformatics 2010, September 20-22, 2010, Braunschweug, Germany. Braunschweig: Technische Universität, 2010. Str. [170]. [COBISS.SI-ID 4557594]
11. ROY CHOUDHURY, Amrita, NOVIČ, Marjana. Protein transmembrane regions prediction : a chemometric exploration. In: Book of abstracts : sixth Indo-US Workshop on Mathematical Chemistry with applications to chemoinformatics, bioinformatics, molecular design, and new drug discovery : january 8-10, 2010, Kolkata, India. Kolkata: Heritage Institute of Technology, 2010. F. 22. [COBISS.SI-ID 4558362]
12. ROY CHOUDHURY, Amrita, NOVIČ, Marjana, ŽUPERL, Špela, PASSAMONTI, Sabina. Structure elucidation of trans membrane proteins using public-available databases and experimental data on competitive inhibition : referat na 6th Indo-US Workshop on mathematical Chemistry, 8-10. 1. 2010, Kolkata, India. Kolkata: [s. n.], 2010. 9 str. [COBISS.SI-ID 4559130]
13. ROY CHOUDHURY, Amrita, NOVIČ, Marjana, ŽUPERL, Špela, PASSAMONTI, Sabina. Structure elucidation of trans membrane proteins using public-available databases and experimental data on competitive inhibition. In: Book of abstracts : sixth Indo-US Workshop on Mathematical Chemistry with applications to chemoinformatics, bioinformatics, molecular design, and new drug discovery : january 8-10, 2010, Kolkata, India. Kolkata: Heritage Institute of Technology, 2010. Str. 11. [COBISS.SI-ID 4558618]
14. NOVIČ, Marjana, ROY CHOUDHURY, Amrita, ŽUPERL, Špela, PASSAMONTI, Sabina. Trans membrane proteins - structural studies and inhibition models : referat na Conferentia Chemometrica 2009, Siofok, september 27-30, 2009. Siofok: [s. n.], 2009. [COBISS.SI-ID 4557850]
15. ROY CHOUDHURY, Amrita, NOVIČ, Marjana. Visualization of protein sequences and classification of trans-membrane segments. In: VUKIČEVIĆ, Damir (ed.). Visualization and modeling in chemistry : book of abstracts : dedicated to professor Ante Graovac in happy celebration of his 65th birthday. Bilateral Croatian-Slovenian Conference, Split, Croatia, October, 29-31, 2010. [S. l.: s. n.], 2010. Str. 19-20, ilustr. [COBISS.SI-ID 4541722]

2011

16. NOVIČ, Marjana, PASSAMONTI, Sabina, ROY CHOUDHURY, Amrita, ŽUPERL, Špela. Mathematical treatment of biochemical data for structure elucidation of transmembrane peptide regions. In: KUTNAR, Klavdija (ed.), ŠPARL, Primož (ed.), KUZMAN, Boštjan (ed.). Abstracts of the 7th Slovenian international conference on graph theory, Bled, Slovenia, 19-25 June 2011. Koper: UP FAMNIT: UP PINT, 2011. Str. 118. [COBISS.SI-ID 4708634]
17. ROY CHOUDHURY, Amrita, NOVIČ, Marjana. Predicting transmembrane ▫$\beta-strands$▫ of membrane protein using a chemometric approach. In: VRAČKO, Marjan (ed.). Abstract book. Ljubljana: Kemijski inštitut: = National Institute of Chemistry, 2011. Str. 42. ISBN 978-961-6104-17-3. [COBISS.SI-ID 4777242]
18. ROY CHOUDHURY, Amrita, ŽUPERL, Špela, PASSAMONTI, Sabina, NOVIČ, Marjana. Structure elucidation of transmembrane proteins using public-available databases and experimental data on competitive inhibition. Acta chimica slovenica. 2011, vol. 58, no. 3, str. 385-392, ilustr. ISSN 1318-0207. http://acta.chem-soc.si/58/58-3-385.pdf, http://www.dlib.si/details/URN:NBN:SI:DOC-PEHWTJCQ. [COBISS.SI-ID 4798234]

2012

19. ROY CHOUDHURY, Amrita, NOVIČ, Marjana. Amino acid distribution in transmembrane regions : a statistical analysis and comparison with globular proteins. International journal of chemical modeling. 2012, vol. 4, iss. 2/3, str. 205-219, ilustr. ISSN 1941-3955. [COBISS.SI-ID 5172506]
20. ROY CHOUDHURY, Amrita, NOVIČ, Marjana. A chemometric approach towards transmembrane region prediction of protein sequences. In: PETELIN, Dejan (ed.), TAVČAR, Aleš (ed.), KALUŽA, Boštjan (ed.). Zbornik = Proceedings. 4. študentska konferenca Mednarodne podiplomske šole Jožefa Stefana = 4th Jožef Stefan International Postgraduate School Students Conference, 25. maj 2012, Ljubljana, Slovenija. Ljubljana: Mednarodna podiplomska šola Jožefa Stefana, 2012. Str. 100-101. ISBN 978-961-92871-4-9. http://ipssc.mps.si/papers/Roy_Choudhury-poster.pdf. [COBISS.SI-ID 5088282]
21. ROY CHOUDHURY, Amrita, NOVIČ, Marjana. A chemometric approach towards transmembrane region prediction of protein sequences. In: PETELIN, Dejan (ed.), TAVČAR, Aleš (ed.), KALUŽA, Boštjan (ed.). Zbornik = Proceedings. 4. študentska konferenca Mednarodne podiplomske šole Jožefa Stefana = 4th Jožef Stefan International Postgraduate School Students Conference, 25. maj 2012, Ljubljana, Slovenija. Ljubljana: Mednarodna podiplomska šola Jožefa Stefana, 2012. Str. 314-319. ISBN 978-961-92871-4-9. http://ipssc.mps.si/papers/Roy_Choudhury-paper.pdf. [COBISS.SI-ID 5088026]
22. ROY CHOUDHURY, Amrita, ZHUKOV, Nikolay, NOVIČ, Marjana. Mathematical characterization of protein transmembrane regions. In: Abstracts. Seventh Indo-US Workshop on Mathematical Chemistry (with applications to chemoinformatics, bioinformatics, toxicoinformatics, molecular design and new drug discovery), December 4-6, 2012, PRIST University, Thanjavur, Tamil Nadu, India. Thanjavur: [s. n.], 2012. Str. [91]. [COBISS.SI-ID 5190170]
23. ROY CHOUDHURY, Amrita, NOVIČ, Marjana. A novel algorithm for prediction of ▫$\beta$▫ transmembrane regions. In: ECCB'12. 11th ECCB European Conference on Computational Biology [and] 10th [BC][up]2 Basel Computational Biology Conference, 9-12 September 2012, Basel, Switzerland. Basel: Swiss Institute of Bioinformatics, 2012. Str. 198. [COBISS.SI-ID 5087770]
24. RANDIĆ, Milan, NOVIČ, Marjana, ROY CHOUDHURY, Amrita, PLAVŠIĆ, Dejan. On graphical representation of trans-membrane proteins. In: Computational methods in toxicology and pharmacology integrating internet resources : CMTPI 2011 : (Maribor, Slovenia, 03-07 September 2011). [S. l.: s. n.], 2012. Vol. 23, iss. 3-4, str. 327-343. SAR and QSAR in environmental research, Vol. 23, no, 3-4. ISSN 1062-936X. http://www.tandfonline.com/doi/abs/10.1080/1062936X.2012.658083. [COBISS.SI-ID 4999194]
25. PERDIH, Andrej, ROY CHOUDHURY, Amrita, ŽUPERL, Špela, SIKORSKA, Emilia, ZHUKOV, Igor, ŠOLMAJER, Tomaž, NOVIČ, Marjana. Structural analysis of a peptide fragment of transmembrane transporter protein bilitranslocase. PloS one. 2012, vol. 7, iss. 6, str. e38967-1-e38967-14. ISSN 1932-6203. http://www.plosone.org/article/fetchArticle.action?articleURI=info:doi/10.1371/journal.pone.0038967. [COBISS.SI-ID 4993562]
26. PERDIH, Andrej, ROY CHOUDHURY, Amrita, ŽUPERL, Špela, SIKORSKA, Emilia, ZHUKOV, Igor, ŠOLMAJER, Tomaž, NOVIČ, Marjana. Structural analysis of a peptide fragment of transmembrane transporter protein bilitranslocase. Global medical discovery. http://globalmedicaldiscovery.com/key-scientific-articles/structural-analysis-of-a-peptide-fragment-of-transmembrane-transporter-protein-bilitranslocase/?doing_wp_cron=1367844908.4375960826873779296875. [COBISS.SI-ID 5226010]

2013

27. ROY CHOUDHURY, Amrita. Development of transmembrane region prediction algorithms and structural elucidation of bilitranslocase : doctoral dissertation = Razvoj napovednih algoritmov transmembranskih regij in pojasnjevanje strukture bilitranslokaze : doktorska disertacija. Ljubljana: [A. Roy Choudhury], 2013. XIV, 112 str., ilustr. [COBISS.SI-ID 268364288]
28. ROY CHOUDHURY, Amrita, ZHUKOV, Igor, NOVIČ, Marjana. Homology-independent prediction of 3-D structure of membrane proteins. In: Key enabling technologies for responsible innovation : [conference handbook]. [Roma]: Agra editrice, 2013. Str. 85. ISBN 978-88-6140-152-5. [COBISS.SI-ID 5392410]
29. ROY CHOUDHURY, Amrita, ZHUKOV, Nikolay, NOVIČ, Marjana. Mathematical characterization of protein transmembrane regions. The scientific world journal. 2013, vol. 2013, str. 607830-1-607830-6. ISSN 1537-744X. http://www.hindawi.com/journals/tswj/2013/607830/, DOI: 10.1155/2013/607830. [COBISS.SI-ID 5341466]
30. ROY CHOUDHURY, Amrita, ZHUKOV, Igor, PASSAMONTI, Sabina, NOVIČ, Marjana. Membrane transporter bilitranslocase - structural model for transmembrane domains. In: Abstracts. 38th FEBS Congress, Saint Petersburg, Russia, July 6-11, 2013. Oxford: Blackwell, 2013. Str. 197. FEBS journal, Vol. 280, iss. suppl. s1. ISSN 1742-464X. [COBISS.SI-ID 5293594]
31. ROY CHOUDHURY, Amrita, NOVIČ, Marjana. Prediction of protein trans-membrane regions - interpretation of Principal Component Analysis (PCA) and Self Organizing Maps (SOM). In: 13th Scandinavian Symposium on Chemometrics : Djurönäset, 17-20 June 2013. Djurönäset: [s. n.], 2013. Str. 38. [COBISS.SI-ID 5276442]
32. ROY CHOUDHURY, Amrita, PERDIH, Andrej, ŽUPERL, Špela, SIKORSKA, Emilia, JURGA, Stefan, ŠOLMAJER, Tomaž, NOVIČ, Marjana, ZHUKOV, Igor. Structural analysis of TM2 and TM3 transmembrane peptide fragments of bilitranslocase transporter protein in lipid media by NMR spectroscopy. In: ZAVASNIK, Jaka (ed.), et al. Trends in biomolecular structure : from chemistry to function : programme and book of abstracts, Ljubljana, Slovenia, October 3-5, 2013. Ljubljana: EN-FIST Centre of Excellence, 2013. Str. 49. ISBN 978-961-281-158-7. [COBISS.SI-ID 5357082]
33. ROY CHOUDHURY, Amrita, PERDIH, Andrej, ŽUPERL, Špela, SIKORSKA, Emilia, ŠOLMAJER, Tomaž, JURGA, Stefan, ZHUKOV, Igor, NOVIČ, Marjana. Structural elucidation of transmembrane transporter protein bilitranslocase : conformational analysis of the second transmembrane region TM2 by molecular dynamics and NMR spectroscopy. Biochimica et biophysica acta. Biomembranes. [Print ed.]. 2013, vol. 1828, iss. 11, str. 2609-2619, ilustr. ISSN 0005-2736. http://www.sciencedirect.com/science/article/pii/S0005273613001958#, DOI: 10.1016/j.bbamem.2013.06.006. [COBISS.SI-ID 5261594]
34. ROY CHOUDHURY, Amrita, NOVIČ, Marjana, ZHUKOV, Igor. Structural study of bilitranslocase. In: 3Dsig 2013 Berlin, Structural Bioinformatics and Computational Biophysics, July 19-20th, ICC Berlin. Berlin: [s. n.], 2013. Str. 49. http://bcb.med.usherbrooke.ca/3dsig13/files/3Dsig2013_Booklet_s.pdf. [COBISS.SI-ID 5385242]
35. ROY CHOUDHURY, Amrita, NOVIČ, Marjana, ZHUKOV, Igor. Towards structural elucidation of transmembrane protein bilitranslocase. In: ISMB/ECCB 2013, Berlin, 21.-23. July 2013. Berlin: [s. n.], 2013. http://www.iscb.org/cms_addon/conferences/ismbeccb2013/posterlist.php. [COBISS.SI-ID 5385754]
36. ROY CHOUDHURY, Amrita, NOVIČ, Marjana. Transmembrane region prediction - amino acid adjacency information based approach. In: Abstracts. 38th FEBS Congress, Saint Petersburg, Russia, July 6-11, 2013. Oxford: Blackwell, 2013. Str. 547. FEBS journal, Vol. 280, iss. suppl. s1. ISSN 1742-464X. [COBISS.SI-ID 5293850]

2014

37. ROY CHOUDHURY, Amrita, NOVIČ, Marjana, ZHUKOV, Igor. Bilitranslocase - structure and functional mechanism. In: 3Dsig 2014 Boston : Structural Bioinformatics and Computational Biophysics, July 11-12th. Boston: [s. n.], 2014. Str. 61. [COBISS.SI-ID 5630234]
38. ROY CHOUDHURY, Amrita, NOVIČ, Marjana, ZHUKOV, Igor. Bilitranslocase transport channel and functional mechanism. In: ISMB 2014. La Jolla (CA): International Society for Computational Biology. https://www.iscb.org/cms_addon/conferences/ismb2014/posterlist.php?cat=L. [COBISS.SI-ID 5629978]
39. ROY CHOUDHURY, Amrita, NOVIČ, Marjana, ZHUKOV, Igor. The transmembrane regions of bilitranslocase. In: ECCB 2014. 13th European Conference on Computational Biology, 7-10 September 2014. Strasbourg, France. [S. l.: s. n.], 2014. [COBISS.SI-ID 5629722]

2015

40. ROY CHOUDHURY, Amrita, NOVIČ, Marjana. ▫$Pred\betaTM$▫ : a novel ▫$beta-transmembrane$▫ region prediction algorithm. PloS one. Dec. 2015, vol. 10, iss. 12, str. 1-13, e0145564. ISSN 1932-6203. http://journals.plos.org/plosone/article/asset?id=10.1371%2Fjournal.pone.0145564.PDF, DOI: 10.1371/journal.pone.0145564. [COBISS.SI-ID 5840154]
41. ROY CHOUDHURY, Amrita, SIKORSKA, Emilia, BOOM, Johannes van den, BAYER, Peter, POPENDA, Łukasz, SZUTKOWSKI, Kosma, JURGA, Stefan, BONOMI, Massimiliano, ŠALI, Andrej, ZHUKOV, Igor, PASSAMONTI, Sabina, NOVIČ, Marjana. Structural model of the bilitranslocase transmembrane domain supported by NMR and FRET data. PloS one. Aug. 2015, vol. 10, iss. 8, str. 1-16, e0135455. ISSN 1932-6203. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0135455, DOI: 10.1371/journal.pone.0135455. [COBISS.SI-ID 5752346]

2017

42. VENKO, Katja, ROY CHOUDHURY, Amrita, NOVIČ, Marjana. Computational approaches for revealing the structure of membrane transporters : case study on bilitranslocase. Computational and Structural Biotechnology Journal. 2017, vol. 15, str. 232-242. ISSN 2001-0370. https://www.sciencedirect.com/science/article/pii/S2001037016300940, DOI: 10.1016/j.csbj.2017.01.008. [COBISS.SI-ID 6110234]

2018

43. AUSEC, Luka, JENKO BIZJAN, Barbara, KOKOŠAR, Janez, ROY CHOUDHURY, Amrita, ŠTAJDOHAR, Miha, GRUDEN, Kristina, KRIŽNIK, Maja, PETEK, Marko, RAMŠAK, Živa. Milestone M27 : user friendly data management and analysis environment for plant systems biology established and novel/improved multiomics data visualisation tool available : NIB final report. [S. l.: s. n.], 2018. http://projects.nib.si/hyp/wp-content/uploads/sites/6/2016/04/Hyp_M27_v1.FINAL_.pdf, DiRROS - Digital repository of Slovenian research organizations. [COBISS.SI-ID 5013583]

2019

44. SZUTKOWSKI, Kosma, SIKORSKA, Emilia, BAKANOVYCH, Iulia, ROY CHOUDHURY, Amrita, PERDIH, Andrej, JURGA, Stefan, NOVIČ, Marjana, ZHUKOV, Igor. Structural analysis and dynamic processes of the transmembrane segment inside different micellar environments-implications for the TM4 fragment of the bilitranslocase protein. International journal of molecular sciences. Sep. 2019, vol. 20, iss. 17, str. 4172-1-4172-21. ISSN 1422-0067. https://www.mdpi.com/1422-0067/20/17/4172/htm, DOI: 10.3390/ijms20174172. [COBISS.SI-ID 6693146]
Selected format of bibliographic unit: ISO 690
Sorting of bibliographic units: Year - ascending, title

A source of bibliographic data: shared data base COBISS.SI/COBIB.SI, 12. 7. 2026