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Vasja Progar
Personal bibliography for the period 2007-2023
2007
1.
KRAJNC, Anja, LENARČIČ, Anita, PROGAR, Vasja, SKVARČA, Eva, SMOLE, Anže, ŠEME, Helena,
ŠUTAR, Tina. Hallerjev penušnjek - hiperakumulacijska rastlina. Collectanea studentium physiologiae plantarum. [Tiskana izd.]. 2007, vol. 2, št. 1, str. 17-20. ISSN 1854-4185. [COBISS.SI-ID 245552128]
2009
2.
PROGAR, Vasja (composer). Aj, zelena je vsa gora : (belokranjska ljudska iz Črnomlja).
In: PODLOGAR, Tereza (ed.). Nocoj je edna lüšna noč : mednarodni natečaj za zborovsko skladbo - priredbo slovenske
ljudske pesmi. Ljubljana: Akademski pevski zbor Tone Tomšič, 2009. Str. 19-29. [COBISS.SI-ID 254005760]
2010
3.
PROGAR, Vasja. Vrednotenje kakovosti žajblja (Salvia officinalis L.) iz naravnih rastišč : diplomsko
delo = Evaluation of quality of sage (Salvia officinalis L.) from natural sites :
graduation thesis. Ljubljana: [V. Progar], 2010. IX, 42 f., ilustr., preglednice. Biotehniška fakulteta,
Študij biotehnologije, Diplomska dela, 25. http://www.digitalna-knjiznica.bf.uni-lj.si/dn_progar_vasja.pdf, Repository of the University of Ljubljana – RUL . [COBISS.SI-ID 6312569]
2013
4.
PROGAR, Vasja, PETROVIČ, Uroš. Vpliv parametrov sekvenciranja naslednje generacije
na zanesljivost rezultatov v metagenomskih študijah = The effect of next generation
sequencing parameters on the reliability of metagenomic studies. Informatica medica slovenica. 2013, letn. 18, št. 1/2, str. 1-8. ISSN 1318-2129. http://www.dlib.si/details/URN:NBN:SI:DOC-PEZ61HW5. [COBISS.SI-ID 27439143]
2014
5.
PROGAR, Vasja, JAKŠE, Jernej, ŠTAJNER, Nataša, POKORN, Tine, RADIŠEK, Sebastjan, JAVORNIK,
Branka. De novo assembly and annotation of verticillium-challenged hop transcriptome
from short read data. In: RAMŠAK, Andreja (ed.), POTOČNIK, Uroš (ed.). Proceedings. 4th Colloquium of Genetics, Piran, September 19th 2014. Ljubljana: Genetic Society
of Slovenia, 2014. Str. 16. ISBN 978-961-90534-8-5. [COBISS.SI-ID 7996793]
6.
ŠTAJNER, Nataša, BITZ, Lidija, BACILIERI, Roberto, PROGAR, Vasja, POKORN, Tine, LACOMBE,
Thierry, LAUCOU, Valérie, BOURSIQUOT, Jean-Michel, JAVORNIK, Branka. Linking two sets
of grapevine material with a genome-covering set of SSRs: identity and parentage analysis
of Western Balkan grapevines. In: DE LORENZIS, Gabriella (ed.), RUSTIONI, Laura (ed.),
FAILLA, Osvaldo (ed.). Progress in Vitis vinifera diversity evaluation and use : final conference, Lisbon
- Portugal, 7-8 October 2014 [and] final management committee, 9 October 2014 : Final
program & abstract book. Lisbon: INIAV - Instituto Nacional de Investigação Agrária e Veterinária, 2014.
Str. 24. [COBISS.SI-ID 8072313]
7.
PROGAR, Vasja, JAKŠE, Jernej, ŠTAJNER, Nataša, RADIŠEK, Sebastjan, ŠVARA, Anže, JAVORNIK,
Branka. Transcriptional analysis of differential gene expression in hop following
infection with Verticillium albo-atrum. In: DOLENC KOCE, Jasna (ed.), URBANEK KRAJNC,
Andreja (ed.), GREBENC, Tine (ed.). Knjiga povzetkov = Book of abstracts. Ljubljana: Slovensko društvo za biologijo rastlin: = Slovenian Society of Plant
Biology, 2014. Str. 56. ISBN 978-961-91014-4-5. [COBISS.SI-ID 7995769]
2015
8.
ŠTAJNER, Nataša, BITZ, Lidija, PROGAR, Vasja, POKORN, Tine, LACOMBE, Thierry, LAUCOU,
Valérie, BOURSIQUOT, Jean-Michel, JAVORNIK, Branka, BACILIERI, Roberto. Genetic clustering
and parentage analysis of Western Balkan grapevines (Vitis vinifera L.). Vitis. 2015, vol. 54, spec. iss., str. 67-72. ISSN 0042-7500. http://pub.jki.bund.de/index.php/VITIS/article/view/5113. [COBISS.SI-ID 8231801]
9.
PROGAR, Vasja, JAKŠE, Jernej, BERNE, Sabina, ŠTAJNER, Nataša, RADIŠEK, Sebastjan,
JAVORNIK, Branka. Hop response to Verticillium infection investigated by RNA-Seq.
In: JAKŠE, Jernej (ed.), et al. Genetika 2015 : book of abstracts. 7th Congress of the Genetic Society of Slovenia and 7th Meeting of the Slovenian
Society of Human Genetics, 20-23 September 2015, Rogaška Slatina, Slovenia. Ljubljana:
Genetic Society of Slovenia: The Slovenian Society of Human Genetics, 2015. Str. 27.
ISBN 978-961-93545-2-0. [COBISS.SI-ID 8259449]
10.
BERNE, Sabina, MARTON, Kristina, PROGAR, Vasja, VOLK, Helena, JAVORNIK, Branka. Identification
and characterization of Verticillium albo-atrum effectors and their protein targets
in hop. In: Workshop on experimental approaches for the investigation of effector function, 10th
- 12th February 2015, Tel Aviv, Israel : COST FA 1208 : Pathogen-informed strategies
for sustainable broad-spectrum crop resistance. [S. l.: COST, 2015]. Str. 18. [COBISS.SI-ID 8111481]
11.
MARTON, Kristina, PROGAR, Vasja, ŠTAJNER, Nataša, JAVORNIK, Branka, BERNE, Sabina.
Identification and spatio-temporal expression profiling of Verticillium albo-atrum
effectors in infected hop plants. In: KOS, Janko (ed.), POKLAR ULRIH, Nataša (ed.).
Molecules of life : book of abstracts. FEBS3+ Meeting and 11th Meeting of the Slovenian Biochemical Society, September
16-19, 2015, Portorož, Slovenia. Ljubljana: Slovenian Biochemical Society, 2015. Str.
242. ISBN 978-961-93879-0-0. [COBISS.SI-ID 8264057]
12.
MARTON, Kristina, PROGAR, Vasja, VOLK, Helena, BERNE, Sabina, JAVORNIK, Branka. In
silico discovery of Verticillium nonalfalfae virulence factors and their functional
verification. In: Cell biology at the plant-microbe interface : [programme, abstracts and participants]. 36th New Phytologist Symposium, Munich, Germany, 29 November - 1 December 2015.
Lancaster: New Phytologist Trust, 2015. Str. 34. [COBISS.SI-ID 8320889]
13.
MARTON, Kristina, BERNE, Sabina, PROGAR, Vasja, ŠTAJNER, Nataša, FLAJŠMAN, Marko,
JAVORNIK, Branka. In silico secretome and effector candidates of the phytopathogenic
fungus Verticillium albo-atrum. In: JAKŠE, Jernej (ed.), et al. Genetika 2015 : book of abstracts. 7th Congress of the Genetic Society of Slovenia and 7th Meeting of the Slovenian
Society of Human Genetics, 20-23 September 2015, Rogaška Slatina, Slovenia. Ljubljana:
Genetic Society of Slovenia: The Slovenian Society of Human Genetics, 2015. Str. 26.
ISBN 978-961-93545-2-0. [COBISS.SI-ID 8259193]
14.
MARTON, Kristina, BERNE, Sabina, PROGAR, Vasja, JAKŠE, Jernej, ŠTAJNER, Nataša, FLAJŠMAN,
Marko, JAVORNIK, Branka. Phytopathogen Verticillium albo-atrum and its effectors:
identification and characterzation. In: Integration of fundamental research into the practical agriculture : progress and
perspectives. [Pannonian Plant Biotechnology Association Conference], Ljubljana, 8-10 June, 2015.
[Ljubljana]: Pannonian Plant Biotechnology Association, 2015. Str. 24-25. [COBISS.SI-ID
8174457]
15.
MARTON, Kristina, PROGAR, Vasja, JAVORNIK, Branka, BERNE, Sabina. Problem shranjevanja,
upravljanja in analize podatkov iz visokozmogljivostnih tehnologij. In: ANDERLUH,
Gregor (ed.), KRAŠEVEC, Nada (ed.). Proteinske pore, sekvenciranje in bioinformatika : mini simpozij 2015, [5. 11. 2015
Ljubljana]. Ljubljana: Laboratorij za molekularno biologijo in nanobiotehnologijo, Kemijski
inštitut, 2015. Str. 16, ilustr. ISBN 978-961-6104-29-6. [COBISS.SI-ID 8300665]
16.
MARTON, Kristina, FLAJŠMAN, Marko, BERNE, Sabina, PROGAR, Vasja, JAVORNIK, Branka.
Temporal and spatial expression of Verticillium albo-atrum candidate effector genes
during infection of hop (Humulus lupulus). In: Evolutionary genomics of plant pathogens. COST action SUSTAIN Summer Workshop, 26th August - 28th August 2015, Kiel, Germany.
Kiel: Christian-Albrechts-Universität, 2015. Str. 47. [COBISS.SI-ID 8263801]
17.
PROGAR, Vasja, JAKŠE, Jernej, ŠTAJNER, Nataša, BERNE, Sabina, RADIŠEK, Sebastjan,
JAVORNIK, Branka. Towards identification of candidate hop genes for resistance to
Verticillium albo-atrum my means of transcriptomic analysis. In: Integration of fundamental research into the practical agriculture : progress and
perspectives. [Pannonian Plant Biotechnology Association Conference], Ljubljana, 8-10 June, 2015.
[Ljubljana]: Pannonian Plant Biotechnology Association, 2015. Str. 23. [COBISS.SI-ID
8174201]
2016
18.
PROGAR, Vasja, BERNE, Sabina, JAKŠE, Jernej, ŠTAJNER, Nataša, RADIŠEK, Sebastjan,
JAVORNIK, Branka. Cutin metabolism implicated in hop defence against Verticillium
nonalfalfae?. In: BERNE, Sabina (ed.), JAVORNIK, Branka (ed.). Book of abstracts. 12th International Verticillium Symposium, Ljubljana, Slovenia, October 6, 2016.
Ljubljana: Biotechnical Faculty, University of Ljubljana, 2016. Str. 56. ISBN 978-961-6379-38-0.
[COBISS.SI-ID 8498553]
19.
PROGAR, Vasja. Deep RNA sequencing and complex NGS dataset analyses reveal gene response patterns
in hop after Verticillium nonalfalfae infection : [poster] 8th European Plant Science
Retreat for PhD students, Barcelona, 20-23 June 2016. [COBISS.SI-ID 8499833]
20.
JAVORNIK, Branka, JAKŠE, Jernej, FLAJŠMAN, Marko, ROT, Gregor, JELEN, Vid, RADIŠEK,
Sebastjan, PROGAR, Vasja, ZUPAN, Blaž. Evolution of virulence in the vascular wilt
pathogen Verticillium nonalfalfae. In: BERNE, Sabina (ed.), JAVORNIK, Branka (ed.).
Book of abstracts. 12th International Verticillium Symposium, Ljubljana, Slovenia, October 6, 2016.
Ljubljana: Biotechnical Faculty, University of Ljubljana, 2016. Str. 21. ISBN 978-961-6379-38-0.
[COBISS.SI-ID 8496761]
21.
PROGAR, Vasja, BERNE, Sabina, JAKŠE, Jernej, ŠTAJNER, Nataša, RADIŠEK, Sebastjan,
JAVORNIK, Branka. Functional enrichment of differentially expressed genes in hop infected
by Verticillium nonalfalfae. In: POTOČNIK, Uroš (ed.), REPNIK, Katja (ed.). Proceedings. 5th Colloquium of Genetics, Piran, September 23rd 2016. Ljubljana: Genetic Society
of Slovenia, 2016. Str. 28. ISBN 978-961-93545-3-7. http://www.sgd.si/docs/Kolokvij2016/ZBORNIK_5._KOLOKVIJ_IZ_GENETIKE.pdf. [COBISS.SI-ID 8509049]
22.
MARTON, Kristina, BERNE, Sabina, PROGAR, Vasja, ŠTAJNER, Nataša, FLAJŠMAN, Marko,
RADIŠEK, Sebastjan, JAVORNIK, Branka. Verticillium nonalfalfae and its candidate secreted
effector proteins. In: POTOČNIK, Uroš (ed.), REPNIK, Katja (ed.). Proceedings. 5th Colloquium of Genetics, Piran, September 23rd 2016. Ljubljana: Genetic Society
of Slovenia, 2016. Str. 29. ISBN 978-961-93545-3-7. http://www.sgd.si/docs/Kolokvij2016/ZBORNIK_5._KOLOKVIJ_IZ_GENETIKE.pdf. [COBISS.SI-ID 8509305]
23.
VOLK, Helena, PROGAR, Vasja, KRAJNC, Anja, DOLINAR, Marko, JAVORNIK, Branka, BERNE,
Sabina. VnaSSP4.2, an effector protein of Verticillium nonalfalfae, interacts with
lipid membranes and forms dimers. In: BERNE, Sabina (ed.), JAVORNIK, Branka (ed.).
Book of abstracts. 12th International Verticillium Symposium, Ljubljana, Slovenia, October 6, 2016.
Ljubljana: Biotechnical Faculty, University of Ljubljana, 2016. Str. 43. ISBN 978-961-6379-38-0.
[COBISS.SI-ID 8498041]
2017
24.
VOLK, Helena, BERNE, Sabina, MARTON, Kristina, PROGAR, Vasja, DOLINAR, Marko, JAVORNIK,
Branka. Assigning function to recombinant effector proteins implicated in Verticillium
wilt of hops. In: GERIČ STARE, Barbara (ed.), KROJ, Thomas (ed.), ŠIRCA, Saša (ed.).
Program & abstracts book. Ljubljana: Agricultural Institute of Slovenia, 2017. Str. 7. [COBISS.SI-ID 8684409]
25.
PROGAR, Vasja, JAKŠE, Jernej, ŠTAJNER, Nataša, RADIŠEK, Sebastjan, JAVORNIK, Branka,
BERNE, Sabina. Comparative transcriptional analysis of hop responses to infection
with Verticillium nonalfalfae. Plant cell reports. [Print ed.]. 2017, vol. 36, iss 10, str. 1599-1613. ISSN 0721-7714. DOI: 10.1007/s00299-017-2177-1. [COBISS.SI-ID 8755577]
26.
PROGAR, Vasja. Transkriptomska analiza genov hmelja (Humulus lupulus L.) po okužbi s fitopatogeno
glivo Verticillium albo-atrum Reinke & Berthold : doktorska disertacija = Transcriptional
analysis of hop genes (Humulus lupulus L.) following infection with phytopathogenic
fungus Verticillium albo-atrum Reinke & Berthold : doctoral dissertation. Ljubljana: [V. Progar], 2017. XI, 89, [11] str., ilustr. http://www.digitalna-knjiznica.bf.uni-lj.si/podiplomski_studij/dd_progar_vasja.pdf, http://www.dlib.si/details/URN:NBN:SI:doc-NG6NG0RS, Repository of the University of Ljubljana – RUL . [COBISS.SI-ID 8873337]
27.
BERNE, Sabina, VOLK, Helena, MARTON, Kristina, FLAJŠMAN, Marko, PROGAR, Vasja, JAVORNIK,
Branka. Verticillium nonalfalfae effectors: from -omics approaches to individual function.
In: Asilomar 17 : abstract book. 29th Fungal Genetics Conference, Pacific Gorve, CA, March 14-19, 2017. Bethesda:
The Genetics Society of America, 2017. Str. 230. http://www.genetics-gsa.org/fungal/2017/Abstract%20Book%202017%208x10.pdf. [COBISS.SI-ID 8706425]
2019
28.
KRANJC, Eva, PIRHER, Nina, BERTALANIČ, Aljaž, DROBNAK, Igor, SMOLE, Luka, PROGAR,
Vasja, PRAPER, Tilen, VODOPIVEC, Martina, et al. Qualification of multi-attribute method for the application for process characterization
of a biosimilar candidate : predavanje na 16th Symposium on the Practical Applications
of Mass Spectrometry in the Biotechnology Industry, 17-20 september 2019, Chicago,
IL, ZDA. [COBISS.SI-ID 16840195]
2020
29.
RUKAVINA, Andrea. Razvoj metode peptidnega kartiranja za uporabo v biofarmacevtiki : magistrsko delo
= Development of the peptide mapping method for use in biopharma industry : M. Sc.
thesis. Ljubljana: [A. Rukavina], 2020. XV, 59 f., [3] f. pril., ilustr. Repository of the University of Ljubljana – RUL . [COBISS.SI-ID 44461571]
2021
30.
KRANJC, Eva, VIDMAR, Tilen, BERTALANIČ, Aljaž, PIRHER, Nina, PROGAR, Vasja, LEVEC,
Ana, MERKLE, Patrick Sascha, PAJK, Stane. Automation of LC-MS multi-attribute method
sample preparation in biopharmaceutical development : 45th FEBS Congress, Molecules
of Life: Towards New Horizons, Ljubljana, Slovenia, July 3-8, 2021. FEBS open bio. 2021, vol. 11, issue s1, str. 297. ISSN 2211-5463. https://febs.onlinelibrary.wiley.com/doi/10.1002/2211-5463.13205, DOI: 10.1002/2211-5463.13205. [COBISS.SI-ID 69804035]
2023
31.
HUDNIK, Domen, BOHANEC, Naja, DROBNAK, Igor, ERNST, Peter, HANKE, Aleksander, HORVAT,
Matej, INNERBICHLER, Franz, MIKELJ, Miha, PRAPER, Tilen, PROGAR, Vasja, VALENČIČ,
Nika, OMLADIČ, Matjaž. Automatic peak annotation and area estimation of glycan map
peaks directly from chromatograms. Journal of chemometrics. 2023, vol. 37, issue 12, str. 1-15, graf. prikazi. ISSN 0886-9383. DOI: 10.1002/cem.3521. [COBISS.SI-ID 188292099]