Marko Petek

1. PETEK, Marko. Uporaba metabolnih mrež pri globalni analizi transkriptoma bakterije Staphylococcus aureus = Use of metabolic networks in global transcriptome analysis of bacteria Staphylococcus aureus : diplomska naloga. Ljubljana: [M. Petek], 2007. 71 f., ilustr. Diplomske naloge. [COBISS.SI-ID 2162289]

2. BOBEN, Jana (photographer), BUH GAŠPARIČ, Meti (photographer), ČEPIN, Urška (photographer), DOBNIK, David (photographer), GRUDEN, Kristina (photographer), HREN, Matjaž (photographer), PETEK, Marko (photographer), PIRC, Manca (photographer), PREZELJ, Nina (photographer), VOJVODA, Jana (photographer), ŽEL, Jana (photographer). Fitografi : razstava Oddelka za biotehnologijo in sistemsko biologijo (FITO), sreda, 29.10.2008, Nacionalni inštitut za biologijo, predavalnica B4 Biološkega središča. 2008. [COBISS.SI-ID 25092569]

3. MOTALN, Helena, HREN, Matjaž, GRUDEN, Kristina, PETEK, Marko, KRALJ NOVAK, Petra, SCHUCHHARDT, Johannes, KLEINJUNG, Frank, SCHICHOR, Cristian, LAH TURNŠEK, Tamara. Bioinformatic Approaches in Defining Physiological Properties of Human Mesenchymal Stem Cells. In: German symposium on systems biology 2009 : May 12-15, 2009, Heidelberg Convention Center (Stadhalle). [Heidelberg: Alliance on systems biology], 2009. Str. 65. [COBISS.SI-ID 25881049]

4. HREN, Matjaž, HERMAN, Ana, KNEŽEVIĆ, Miomir, RAVNIKAR, Maja, ROŽMAN, Primož, MOTALN, Helena, PETEK, Marko, KRALJ NOVAK, Petra, MOZETIČ, Igor, LAVRAČ, Nada, PODPEČAN, Vid, SCHUCHHARDT, Johannes, BAUER, Chris, SCHICHOR, Christian, OR-GUIL, Michal, SELBIG, Joachim, LAH TURNŠEK, Tamara, GRUDEN, Kristina. Development of cell-based therapies using systems biology tools. In: GOLIČNIK, Marko (ed.), BAVEC, Aljoša (ed.). Book of abstracts. Joint Congress of the Slovenian Biochemical Society and the Genetic Society of Slovenia with International Participation, Otočec, September 20-23, 2009. Ljubljana: Slovenian Biochemical Society: Genetic Society of Slovenia, 2009. Str. 100. ISBN 978-961-91651-5-7. [COBISS.SI-ID 26037977]

5. PETEK, Marko, BAEBLER, Špela, KUZMAN, Drago, ROTTER, Ana, PODLESEK, Zdravko, GRUDEN, Kristina, RAVNIKAR, Maja, URLEB, Uroš. Fosfomycin primary effects on Staphylococcus aureus transcript-ome: time and concentration dependent modulation of metabolic pathways. In: GOLIČNIK, Marko (ed.), BAVEC, Aljoša (ed.). Book of abstracts. Joint Congress of the Slovenian Biochemical Society and the Genetic Society of Slovenia with International Participation, Otočec, September 20-23, 2009. Ljubljana: Slovenian Biochemical Society: Genetic Society of Slovenia, 2009. Str. 77. ISBN 978-961-91651-5-7. [COBISS.SI-ID 26034137]

6. LAVRAČ, Nada, MOZETIČ, Igor (scribe), PODPEČAN, Vid, KRALJ NOVAK, Petra, MOTALN, Helena, PETEK, Marko, GRUDEN, Kristina. Gene analytics : discovery and contextualization of enriched gene sets. In: NÜERNBERGER, Andreas (ed.). Workshop on Explorative Analytics of Information Networks at ECML PKDD 2009, September 11, 2009, Bled, Slovenia. [S. l.: s. n.], 2009. Str. 39-49. [COBISS.SI-ID 23255335]

7. BAEBLER, Špela, KOGOVŠEK, Polona, ROTTER, Ana, DOBNIK, David, PETEK, Marko, STARE, Katja, POMPE NOVAK, Maruša, ŽEL, Jana, GRUDEN, Kristina, RAVNIKAR, Maja. Host egene expression in early stages of potato-PVY interaction. In: COST FA0806 WGs meeting ; Plant virus control employing RNA-based vaccines: a novel nontransgenic strategy, Hotel Rantapuisto, Helsinki, September 11-12, 2009 : [Abstract Book]. Helsinki: [University of Helsinki], 2009. Str. 19. [COBISS.SI-ID 26348761]

8. PETEK, Marko, BAEBLER, Špela, KOGOVŠEK, Polona, ROTTER, Ana, DOBNIK, David, STARE, Katja, POMPE NOVAK, Maruša, ŽEL, Jana, RAVNIKAR, Maja, GRUDEN, Kristina. Potato - PVY interation: a system biology approach. In: BAVEC, Aljoša (ed.). From arrays to understanding diseases. 4th CFGBC Symposium, June 17, 2009, Ljubljana, Slovenia. Ljubljana: Faculty of Medicine, 2009. Str. 62. ISBN 978-961-267-012-2. [COBISS.SI-ID 26655705]

9. LAVRAČ, Nada, KRALJ NOVAK, Petra, MOZETIČ, Igor, PODPEČAN, Vid, MOTALN, Helena, PETEK, Marko, GRUDEN, Kristina. Semantic subgroup discovery : using ontologies in microarray data analysis. In: Engineering the future of biomedicine : proceedings of the 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2-6 September, 2009, Minneapolis, Minnesota. [New York]: Institute of Electrical and Electronics Engineers, cop. 2009. Str. 5613-5616. ISBN 978-1-4244-329607. [COBISS.SI-ID 22990631]

10. BAEBLER, Špela, KOGOVŠEK, Polona, ROTTER, Ana, DOBNIK, David, PETEK, Marko, STARE, Katja, POMPE NOVAK, Maruša, ŽEL, Jana, RAVNIKAR, Maja, GRUDEN, Kristina. Systems biology approach to potato - PVY interaction. In: IET BioSysBio. IET Conference on Synthetic Biology, Systems Biology and Bioinformatics 2009, 23 - 25 March 2009, Cambridge. Cambridge: Institution of Engineering and Technology Systems and Synthetic Biology Network, 2009. Str. 106. [COBISS.SI-ID 25580505]

11. BAEBLER, Špela, KOGOVŠEK, Polona, ROTTER, Ana, WITEK, Kamil, DOBNIK, David, PETEK, Marko, STARE, Katja, POMPE NOVAK, Maruša, ŽEL, Jana, HENNIG, Jacek, RAVNIKAR, Maja, GRUDEN, Kristina. Towards understanding biology of potato-PVY interaction. In: 8. Plant Genomics European Meeting, 07-10 October, Lisbon, Portugal. Lisbon: [S.n.], 2009. Str. 75. [COBISS.SI-ID 26381529]

12. MOZETIČ, Igor, LAVRAČ, Nada, PODPEČAN, Vid, KRALJ NOVAK, Petra, MOTALN, Helena, PETEK, Marko, GRUDEN, Kristina, TOIVONEN, Hannu, KULOVESI, Kimmo. Bisociative knowledge discovery for microarray data analysis. In: VENTURA, Dan (ed.). Proceedings of the International Conference on Computational, ICCC-X, Creativity, 7-9 January 2010, Lisbon, Portugal. Coimbra: Departament of Informatics Engineering, University of Coimbra, 2010. Str. 190-199. ISBN 978-989-96001-2-6. [COBISS.SI-ID 23374375]

13. BAEBLER, Špela, KOVAČ, Maja, BLEJEC, Andrej, KOGOVŠEK, Polona, ROTTER, Ana, DOBNIK, David, PETEK, Marko, STARE, Katja, STARE, Tjaša, POMPE NOVAK, Maruša, ŽEL, Jana, RAVNIKAR, Maja, GRUDEN, Kristina. Deciphering biology of potato-PVY interation. In: DOLENC KOCE, Jasna (ed.), VODNIK, Dominik (ed.), PONGRAC, Paula (ed.). Knjiga povzetkov = Book of abstracts. 5. Slovenski simpozij o rastlinski biologiji z mednarodno udeležbo, Ljubljana, 6.-9. september 2010 = 5th Slovenian Symposium on Plant Biology with International Participation, Ljubljana, September 6.-9., 2010. Ljubljana: Slovensko društvo za biologijo rastlin: = The Slovenian Society of Plant Biology, 2010. Str. 65. ISBN 978-961-91014-3-8. [COBISS.SI-ID 27397337]

14. BAEBLER, Špela, KORBAR, Marija, MOZETIČ, Igor, HREN, Matjaž, PETEK, Marko, STARE, Tjaša, GRUDEN, Kristina. GoMapMan: helping plant scientist gight the omics data. In: DOLENC KOCE, Jasna (ed.), VODNIK, Dominik (ed.), PONGRAC, Paula (ed.). Knjiga povzetkov = Book of abstracts. 5. Slovenski simpozij o rastlinski biologiji z mednarodno udeležbo, Ljubljana, 6.-9. september 2010 = 5th Slovenian Symposium on Plant Biology with International Participation, Ljubljana, September 6.-9., 2010. Ljubljana: Slovensko društvo za biologijo rastlin: = The Slovenian Society of Plant Biology, 2010. Str. 85. ISBN 978-961-91014-3-8. [COBISS.SI-ID 27398617]

15. PETEK, Marko, BAEBLER, Špela, KUZMAN, Drago, ROTTER, Ana, PODLESEK, Zdravko, GRUDEN, Kristina, RAVNIKAR, Maja, URLEB, Uroš. Revealing fosfomycin primary effect on Staphylococcus aureus transcriptome : modulation of cell envelope biosynthesis and phosphoenolpyruvate induced starvation. BMC microbiology. 2010, vol. 10, no. 159, 28, [7] str. ISSN 1471-2180. http://dx.doi.org/10.1186/1471-2180-10-159, Repository of the University of Ljubljana – RUL , DOI: 10.1186/1471-2180-10-159. [COBISS.SI-ID 2229327]

16. GRUDEN, Kristina, KRALJ, Petra, MOZETIČ, Igor, PODPEČAN, Vid, HREN, Matjaž, MOTALN, Helena, PETEK, Marko, LAVRAČ, Nada. Structural modeling of transcriptomics data using creative knowledge discovery. In: JUVAN, Peter (ed.). From arrays to understanding diseases. 5th CFGBC Symposium, June 16th, 2010, Ljubljana, Slovenia. Ljubljana: Faculty of Medicine, 2010. Str. 46. ISBN 978-961-267-023-8. [COBISS.SI-ID 27102681]

17. BAEBLER, Špela, KOVAČ, Maja, BLEJEC, Andrej, KOGOVŠEK, Polona, ROTTER, Ana, DOBNIK, David, PETEK, Marko, STARE, Katja, STARE, Tjaša, POMPE NOVAK, Maruša, ŽEL, Jana, RAVNIKAR, Maja, GRUDEN, Kristina, et al. Systems biology approaches - PVY interaction. In: Abstract book. COST Action FA0806, 20-21/9/2010, Neustadt an der Weinstrasse, Germany. Neustadt an der Weinstrasse: AIPlanta; Institute for Plant Research, 2010. Str. 12. [COBISS.SI-ID 2331215]

18. MILJKOVIĆ, Dragana (scribe), DEPOLLI, Matjaž, PETEK, Marko, STARE, Tjaša, DERMASTIA, Marina, GRUDEN, Kristina, MOZETIČ, Igor, LAVRAČ, Nada. Constraint-driven optimiztion approach to build a Petri net defense model in plants. In: Program and oral abstracts. COBRA 2011, 1st Conference on Constraint-based Reconstruction and Analysis, 24th-26th June 2011, Reykjavik, Iceland. Reykjavik: University of Iceland, Center for Systems Biology, 2011. [COBISS.SI-ID 24863527]

19. PETEK, Marko, TURNŠEK, Neža, SLAPAR, Nina, BUH GAŠPARIČ, Meti, POMPE NOVAK, Maruša, ŠTRUKELJ, Borut, JONGSMA, Maarten Anthonie, GRUDEN, Kristina. Evidence of diverse genes involved in Leptinotarsa decemlineata larvae adaptation to potato defence. In: SIP-14, 2011 - Wageningen : Programme and Abstracts. 14th Symposium on Insect-Plant Interactions, Saturday August 13 - Thursday 18, 2011, Wageningen. S. l.: S. n., [2011]. Str. 182. [COBISS.SI-ID 28965849]

20. PETEK, Marko, TURNŠEK, Neža, SLAPAR, Nina, POPOVIČ, Tatjana, BUH GAŠPARIČ, Meti, POMPE NOVAK, Maruša, ŠTRUKELJ, Borut, JONGSMA, Maarten Anthonie, GRUDEN, Kristina. Evidence of diverse genes involved in Leptinotarsa decemlineata larvae adaptation to potato defence. In: JANEŽIČ, Sandra (ed.), et al. Abstract book. 9th Congress of the Slovenian Biochemical Society [also] 5th Congress of the Slovenian Microbiological Society with International Participation [also] 3rd CEFORM (Central European Forum for Microbiology), Maribor, 12th - 15th October 2011. Maribor: Zavod za zdravstveno varstvo, 2011. Str. 278. ISBN 978-961-90895-5-2. [COBISS.SI-ID 29032153]

21. GRUDEN, Kristina, PODPEČAN, Vid, LAVRAČ, Nada, MOZETIČ, Igor, KRALJ NOVAK, Petra, LANGOHR, Laura, KULOVESI, Kimmo, TOIVONEN, Hannu, PETEK, Marko, MOTALN, Helena. SegMine : a tool for semantic microarray data analysis. In: Program and Abstracts : System Biology: From Molecules to Function. FEBS & System X Advanced Lecture Course, Innsbruck, 26 February - 4 March 2011. [Innsbruck: Federation of European Biochemical Societies (FEBS), 2011]. Str. 87. [COBISS.SI-ID 28301785]

22. PODPEČAN, Vid, LAVRAČ, Nada, MOZETIČ, Igor, KRALJ NOVAK, Petra, TRAJKOVSKI, Igor, LANGOHR, Laura, KULOVESI, Kimmo, TOIVONEN, Hannu, PETEK, Marko, MOTALN, Helena, GRUDEN, Kristina. SegMine workflows for semantic microarray data analysis in Orange4WS. BMC bioinformatics. 2011, vol. 12, no. 416, str. 416-1-416-16. ISSN 1471-2105. DiRROS - Digital repository of Slovenian research organizations, DOI: 10.1186/1471-2105-12-416. [COBISS.SI-ID 25208871]

23. PETEK, Marko, PODPEČAN, V., LAVRAČ, Nada, MOZETIČ, Igor, KRALJ, Petra, LANGHOR, L., KULOVESI, Kimmo, TOIVONEN, Hannu, MOTALN, Helena, GRUDEN, Kristina. Segmine: workflow environment for semantic microarray data analysis. In: JANEŽIČ, Sandra (ed.), et al. Abstract book. 9th Congress of the Slovenian Biochemical Society [also] 5th Congress of the Slovenian Microbiological Society with International Participation [also] 3rd CEFORM (Central European Forum for Microbiology), Maribor, 12th - 15th October 2011. Maribor: Zavod za zdravstveno varstvo, 2011. Str. 268. ISBN 978-961-90895-5-2. [COBISS.SI-ID 29030361]

24. BAEBLER, Špela, WITEK, Kamil, PETEK, Marko, STARE, Katja, POMPE NOVAK, Maruša, HENNIG, Jacek, RAVNIKAR, Maja, GRUDEN, Kristina. Understanding potato - PVY interaction by systems biology approach. In: 19th Symposium of the Serbian Plant Physiology Society, Banja Vrujci, 13-15 June 2011 : Programme and Abstracts. Belgrade: Serbian Plant Physiology Society, 2011. Str. 17. [COBISS.SI-ID 28654297]

25. BAEBLER, Špela, STARE, Katja, PETEK, Marko, POMPE NOVAK, Maruša, RAVNIKAR, Maja, GRUDEN, Kristina. Understanding potato - PVY interaction: a systems biology approach. In: Plant Abiotic Stress: From Systems Biology to Sustainable Agriculture : [Book of Abstracts]. 4th International Workshop of COST Action FA0605, Limassol, Cyprus, 17-19 November 2011. Limassol: S. n., 2011. Str. 44. [COBISS.SI-ID 29485785]

26. PETEK, Marko, TURNŠEK, Neža, BUH GAŠPARIČ, Meti, POMPE NOVAK, Maruša, GRUDEN, Kristina, SLAPAR, Nina, POPOVIČ, Tatjana, ŠTRUKELJ, Borut, JONGSMA, Maarten Anthonie. A complex of genes involved in adaptation of Leptinotarsa decemlineata larvae to induced potato defense. Archives of insect biochemistry and physiology. 2012, vol. 79, no. 3, str. 153-181. ISSN 0739-4462. http://onlinelibrary.wiley.com/doi/10.1002/arch.21017/pdf. [COBISS.SI-ID 3232369]

27. MILJKOVIĆ, Dragana, DEPOLLI, Matjaž, MOZETIČ, Igor, LAVRAČ, Nada, STARE, Tjaša, PETEK, Marko, GRUDEN, Kristina. Constraint-driven optimization of plant defense model parameters. In: GAO, Jean (ed.). Proceedings. 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW), 4-7 October 2012, Philadelphia. Danvers: Institute of Electrical and Electronics Engineers, 2012. Str. 570-574. ISBN 978-1-4673-2558-5. [COBISS.SI-ID 26222887]

28. GRUDEN, Kristina, MILJKOVIĆ, Dragana, STARE, Tjaša, MOZETIČ, Igor, PODPEČAN, Vid, PETEK, Marko, WITEK, Kamil, DERMASTIA, Marina, LAVRAČ, Nada. Constructing signalling network topology for modelling the plant defence. In: ICSB. The 13th International Conference on System Biology, August 19-23, 2012, Toronto, Canada. [S. l.: s. n.], 2012. Str. 199. [COBISS.SI-ID 30234329]

29. LANGOHR, Laura, PODPEČAN, Vid, PETEK, Marko, MOZETIČ, Igor, GRUDEN, Kristina. Contrast mining from interesting subgroups. In: BERTHOLD, Michael R. (ed.). Bisociative knowledge discovery : an introduction to concept, algorithms, tools, and applications. Heidelberg [etc.]: Springer, cop. 2012. Str. 390-406, ilustr. Lecture notes in computer science, Lecture notes in artificial intelligence, 7250. ISBN 978-3-642-31829-0, ISBN 3-642-31829-0, ISBN 978-3-642-31830-6. ISSN 0302-9743. [COBISS.SI-ID 25940519]

30. PETEK, Marko. Interakcije med krompirjem (Solanum tuberosum L.), krompirjevim virusom Y (PVY) in koloradskim hroščem (Leptinotarsa decemlineata Say) na molekularnem nivoju : doktorska disertacija = Interactions between potato (Solanum tuberosum L.), potato virus Y (PVY) and Colorado potato beetle (Leptinotarsa decemlineata Say) at molecular level : doctoral dissertation. Ljubljana: [M. Petek], 2012. XVIII, 153 str., [5] str. pril., ilustr. http://www.dlib.si/details/URN:NBN:SI:doc-6SR6FH4Z. [COBISS.SI-ID 757111]

31. MILJKOVIĆ, Dragana, PODPEČAN, Vid, GRČAR, Miha, GRUDEN, Kristina, STARE, Tjaša, PETEK, Marko, MOZETIČ, Igor, LAVRAČ, Nada. Modelling a biological system : network creation by triplet extraction from biological literature. In: BERTHOLD, Michael R. (ed.). Bisociative knowledge discovery : an introduction to concept, algorithms, tools, and applications. Heidelberg [etc.]: Springer, cop. 2012. Str. 427-437, ilustr. Lecture notes in computer science, Lecture notes in artificial intelligence, 7250. ISBN 978-3-642-31829-0, ISBN 3-642-31829-0, ISBN 978-3-642-31830-6. ISSN 0302-9743. [COBISS.SI-ID 25940263]

32. MOZETIČ, Igor, LAVRAČ, Nada, PODPEČAN, Vid, KRALJ NOVAK, Petra, MOTALN, Helena, PETEK, Marko, GRUDEN, Kristina, TOIVONEN, Hannu, KULOVESI, Kimmo. Semantic subgroup discovery and cross-context linking for microarray data analysis. In: BERTHOLD, Michael R. (ed.). Bisociative knowledge discovery : an introduction to concept, algorithms, tools, and applications. Heidelberg [etc.]: Springer, cop. 2012. Str. 379-389, ilustr. Lecture notes in computer science, Lecture notes in artificial intelligence, 7250. ISBN 978-3-642-31829-0, ISBN 3-642-31829-0, ISBN 978-3-642-31830-6. ISSN 0302-9743. [COBISS.SI-ID 25940775]

33. MILJKOVIĆ, Dragana, STARE, Tjaša, MOZETIČ, Igor, PODPEČAN, Vid, PETEK, Marko, WITEK, Kamil, DERMASTIA, Marina, LAVRAČ, Nada, GRUDEN, Kristina. Signalling network construction for modelling plant defence response. PloS one. 2012, vol. 7, no. 12, str. e51822-1e51822-18. ISSN 1932-6203. https://doi.org/10.1371/journal.pone.0051822, DiRROS - Digital repository of Slovenian research organizations, DOI: 10.1371/journal.pone.0051822. [COBISS.SI-ID 26363431]

34. KOGOVŠEK, Polona, POMPE NOVAK, Maruša, PREZELJ, Nina, PETEK, Marko, FRAGNER, Lena, WECKWERTH, Wolfram, ZALAR, Polona, GUNDE-CIMERMAN, Nina, GRUDEN, Kristina, RAVNIKAR, Maja. Analysis of the impact of viral infection on potato physiology and its microbial community. In: PETAN, Toni (ed.), ŠPES, Aleš (ed.). Book of abstracts. 10th Meeting of the Slovenian Biochemical Society with International Participation, Ljubljana, Slovenia, September 15-18, 2013. Ljubljana: Slovenian Biochemical Society, 2013. Str. 114. ISBN 978-961-91651-8-8. [COBISS.SI-ID 30822617]

35. KOGOVŠEK, Polona, POMPE NOVAK, Maruša, VIRANT, David, KUTNJAK, Denis, PREZELJ, Nina, PETEK, Marko, FRAGNER, Lena, WECKWERTH, Wolfram, RAVNIKAR, Maja, GRUDEN, Kristina. Analysis of the impact of viral infection on potato physiology and its microbial community. In: Metagenomics: Managing, Analysing and Visualising Data, September 2013, Wellcome Trust Genome Campus, Hinxton, UK. [S. l.: s. n., 2013]. Str. [1]. [COBISS.SI-ID 3111503]

36. LANGOHR, Laura, PODPEČAN, Vid, PETEK, Marko, MOZETIČ, Igor, GRUDEN, Kristina, LAVRAČ, Nada, TOIVONEN, Hannu. Contrasting subgroup discovery. The Computer journal. sep. 2013, vol. 56, no. 3, str. 289-303. ISSN 0010-4620. DOI: 10.1093/comjnl/bxs132. [COBISS.SI-ID 26152487]

37. STARE, Tjaša, RAMŠAK, Živa, MILJKOVIĆ, Dragana, PETEK, Marko, LAVRAČ, Nada, MOZETIČ, Igor, VODNIK, Dominik, GRUDEN, Kristina. Dynamics of plant defense response to virus infection. In: Plant immunity : pathways and translation. [S. l.: Keystone symposia, 2013]. Str. 60. [COBISS.SI-ID 2789199]

38. ŠMID, Ida, GRUDEN, Kristina, BUH GAŠPARIČ, Meti, KORUZA, Katarina, PETEK, Marko, POHLEVEN, Jure, BRZIN, Jože, KOS, Janko, ŽEL, Jana, SABOTIČ, Jerica. Inhibition of the growth of Colorado potato beetle larvae by macrocypins, protease inhibitors from the parasol mushroom. Journal of agricultural and food chemistry. 2013, vol. 61, issue 51, str. 12499-12509. ISSN 0021-8561. DOI: 10.1021/jf403615f. [COBISS.SI-ID 27291431]

39. PODPEČAN, Vid, MILJKOVIĆ, Dragana, PETEK, Marko, STARE, Tjaša, GRUDEN, Kristina, MOZETIČ, Igor, LAVRAČ, Nada. Integrating semantic transcriptomic data analysis andknowledge extraction from biological literature. In: Proceedings. 2013 IEEE International Conference on Bioinformatics and Biomedicine Workshops BIBM 2013, Shanghai, China, December 18-21, 2013. Danvers: Institute of Electrical and Electronics Engineers, 2013. Str. 477-480. ISBN 978-1-4799-1309-1. [COBISS.SI-ID 27382823]

40. MILJKOVIĆ, Dragana, DEPOLLI, Matjaž, PETEK, Marko, STARE, Tjaša, GRUDEN, Kristina, MOZETIČ, Igor, LAVRAČ, Nada. Iterative modifications of the plant defence model based on the constrant-driven paramente optimisation. In: AČIMOVIČ, Jure (ed.), PROSENC ZMRZLJAK, Uršula (ed.), JUVAN, Peter (ed.). Book of abstracts. Casym Training Event Systems Medicine of Multifactorial Disorders Workshop & Tutorial and 8th CFGBC Symposium, Ljubljana, 12-15 June 2013. Ljubljana: Faculty of Medicine, 2013. Str. 43. ISBN 978-961-267-060-3. [COBISS.SI-ID 26817319]

41. STARE, Tjaša (interviewee), PETEK, Marko, COLL RIUS, Anna, LAZAR, Ana, BAEBLER, Špela, GRUDEN, Kristina. Komunikacija rastlin : oddaja Dobra ura z Andrejem, rubrika Ugriznimo znanost, TV Slovenija 1, Ljubljana, 16. 05. 2013. Ljubljana: TV Slovenija, 2013. [COBISS.SI-ID 2799439]

42. KOGOVŠEK, Polona, POMPE NOVAK, Maruša, PREZELJ, Nina, PETEK, Marko, FRAGNER, Lena, WECKWERTH, Wolfram, RAVNIKAR, Maja, GRUDEN, Kristina. Metabolomic analysis of the potato defence response to infection with Potato virus Y. In: AČIMOVIČ, Jure (ed.), PROSENC ZMRZLJAK, Uršula (ed.), JUVAN, Peter (ed.). Book of abstracts. Casym Training Event Systems Medicine of Multifactorial Disorders Workshop & Tutorial and 8th CFGBC Symposium, Ljubljana, 12-15 June 2013. Ljubljana: Faculty of Medicine, 2013. Str. 38. ISBN 978-961-267-060-3. [COBISS.SI-ID 2825551]

43. DOBNIK, David, PETEK, Marko, CURK, Tomaž, ŽEL, Jana, GRUDEN, Kristina. MicroRNAs in potato-PVY interaction. In: PETAN, Toni (ed.), ŠPES, Aleš (ed.). Book of abstracts. 10th Meeting of the Slovenian Biochemical Society with International Participation, Ljubljana, Slovenia, September 15-18, 2013. Ljubljana: Slovenian Biochemical Society, 2013. Str. 53. ISBN 978-961-91651-8-8. [COBISS.SI-ID 30820057]

44. STARE, Tjaša, MILJKOVIĆ, Dragana, RAMŠAK, Živa, PETEK, Marko, BAEBLER, Špela, COLL RIUS, Anna, MOZETIČ, Igor, LAVRAČ, Nada, GRUDEN, Kristina. Modeling of potato signaling response to PVY infection. In: Book of abstract. [S. l.: s. n., 2013]. Str. 17. [COBISS.SI-ID 2896207]

45. STARE, Tjaša, MILJKOVIĆ, Dragana, RAMŠAK, Živa, PETEK, Marko, BAEBLER, Špela, VODNIK, Dominik, MOZETIČ, Igor, LAVRAČ, Nada, GRUDEN, Kristina. Modelling of plant signaling response to viral infection. In: PETAN, Toni (ed.), ŠPES, Aleš (ed.). Book of abstracts. 10th Meeting of the Slovenian Biochemical Society with International Participation, Ljubljana, Slovenia, September 15-18, 2013. Ljubljana: Slovenian Biochemical Society, 2013. Str. 52. ISBN 978-961-91651-8-8. [COBISS.SI-ID 30819289]

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48. KUTNJAK, Denis, DOBNIK, David, MORISSET, Dany, KOVAČ, Minka, PETEK, Marko, RUPAR, Matevž, GUTIÉRREZ-AGUIRRE, Ion, GRUDEN, Kristina, RAVNIKAR, Maja. Next generation sequencing (NGS) for the discovery of plant pathogenic viruses. In: PETAN, Toni (ed.), ŠPES, Aleš (ed.). Book of abstracts. 10th Meeting of the Slovenian Biochemical Society with International Participation, Ljubljana, Slovenia, September 15-18, 2013. Ljubljana: Slovenian Biochemical Society, 2013. Str. 120. ISBN 978-961-91651-8-8. [COBISS.SI-ID 30821081]

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50. DOBNIK, David, PETEK, Marko, CURK, Tomaž, ŽEL, Jana, GRUDEN, Kristina. Potato-PVY interaction from miRNA perspective. In: Book of abstract. [S. l.: s. n., 2013]. Str. 9. [COBISS.SI-ID 2895951]

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52. BAEBLER, Špela, WITEK, Kamil, PETEK, Marko, POMPE NOVAK, Maruša, GRUDEN, Kristina, HENNIG, Jacek. Role of salicylic acid in Ny-1 mediated hypersensitive resistance response to potato virus Y in potato. In: Book of abstract. [S. l.: s. n., 2013]. Str. 5. [COBISS.SI-ID 2895695]

53. KIRM, Benjamin, MAGDEVSKA, Vasilka, TOME, Miha, HORVAT, Marinka, KARNIČAR, Katarina, PETEK, Marko, VIDMAR, Robert, BAEBLER, Špela, JAMNIK, Polona, FUJS, Štefan, HORVAT, Jaka, FONOVIĆ, Marko, TURK, Boris, GRUDEN, Kristina, PETKOVIĆ, Hrvoje, KOSEC, Gregor. SACE_5599, a putative regulatory protein, is involved in morphological differentiation and erythromycin production in Saccharopolyspora erythraea. Microbial cell factories. 2013, vol. 12, str. 126-1-126-15. ISSN 1475-2859. http://www.microbialcellfactories.com/content/12/1/126/abstract, DiRROS - Digital repository of Slovenian research organizations, DOI: 10.1186/1475-2859-12-126. [COBISS.SI-ID 3005775]

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55. PETEK, Marko, ROTTER, Ana, KOGOVŠEK, Polona, BAEBLER, Špela, MITHÖFER, Axel, GRUDEN, Kristina. Multiple attackers: potato infected with potato virus Y promotes Colorado potato beetle growth : predavanje na: XVI International Congress on Molecular Plant-Microbe Interactions (IS-MPMI), 6-10 July 2014, Rhodes, Greece. Rhodes, 2014. [COBISS.SI-ID 31684057]

56. MILJKOVIĆ, Dragana, DEPOLLI, Matjaž, STARE, Tjaša, MOZETIČ, Igor, PETEK, Marko, GRUDEN, Kristina, LAVRAČ, Nada. Plant defence model revisions through iterative minimisation of constraint violations. International journal of computational biology and drug design. 2014, vol. 7, no. 1, str. 61-79. ISSN 1756-0756. DOI: 10.1504/IJCBDD.2014.058588. [COBISS.SI-ID 27540775]

57. PETEK, Marko, ROTTER, Ana, KOGOVŠEK, Polona, BAEBLER, Špela, MITHÖFER, Axel, GRUDEN, Kristina. Potato Virus Y infection hinders potato defence response and renders plants more vulnerable to Colorado potato beetle attack. In: DOLENC KOCE, Jasna (ed.), URBANEK KRAJNC, Andreja (ed.), GREBENC, Tine (ed.). Knjiga povzetkov = Book of abstracts. Ljubljana: Slovensko društvo za biologijo rastlin: = Slovenian Society of Plant Biology, 2014. Str. 60. ISBN 978-961-91014-4-5. [COBISS.SI-ID 31607513]

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59. KOGOVŠEK, Polona, POMPE NOVAK, Maruša, PREZELJ, Nina, PETEK, Marko, FRAGNER, Lena, WECKWERTH, Wolfram, GRUDEN, Kristina. Primary metabolites increase in potato plants after infection with PVY. In: DOLENC KOCE, Jasna (ed.), URBANEK KRAJNC, Andreja (ed.), GREBENC, Tine (ed.). Knjiga povzetkov = Book of abstracts. Ljubljana: Slovensko društvo za biologijo rastlin: = Slovenian Society of Plant Biology, 2014. Str. 64. ISBN 978-961-91014-4-5. [COBISS.SI-ID 31608281]

60. BAEBLER, Špela, WITEK, Kamil, PETEK, Marko, STARE, Katja, TUŠEK-ŽNIDARIČ, Magda, POMPE NOVAK, Maruša, RENAUT, Jenny, SZAJKO, K., STRZELCZYK-ŻYTA, D., MARCZEWSKI, W., MORGIEWICZ, Karolina, GRUDEN, Kristina, HENNIG, Jacek. Salicylic acid is an indispensable component of the Ny-1 resistance-gene-mediated response against Potato virus Y infection in potato. Journal of Experimental Botany. 2014, vol. 65, iss. 4, str. 1095-1109. ISSN 0022-0957. DiRROS - Digital repository of Slovenian research organizations, DOI: 10.1093/jxb/ert447. [COBISS.SI-ID 3027535]

61. PETEK, Marko, ROTTER, Ana, KOGOVŠEK, Polona, BAEBLER, Špela, MITHÖFER, Axel, GRUDEN, Kristina. Using OMICS approaches to study the interaction between potato, Potato virus Y and Colorado potato beetle. In: KOŠIR, Rok (ed.), JUVAN, Peter (ed.), PROSENC ZMRZLJAK, Uršula (ed.). From arrays and sequencing to understanding diseases : book of abstracts. Ljubljana: Faculty of Medicine, 2014. Str. 45. ISBN 978-961-267-081-8. http://cfgbc.mf.uni-lj.si/2014anniv9/abstracts/abstractsLectures.html, http://cfgbc.mf.uni-lj.si/2014anniv9/AbstractBook_2014.pdf. [COBISS.SI-ID 31635161]

62. BRATAŠEVEC, Kristina, MOZETIČ VODOPIVEC, Branka, PETEK, Marko, SIVILOTTI, Paolo. Hydroxycinnamic acids as affected by different fertilization of Rebula grapevines. Journal of plant nutrition and soil science. [Print ed.]. 2015, vol. 178, iss. 6, str. 868-877, ilustr. ISSN 1436-8730. DOI: 10.1002/jpln.201500005. [COBISS.SI-ID 4073467]

63. PETEK, Marko, ROTTER, Ana, KOGOVŠEK, Polona, BAEBLER, Špela, MITHÖFER, Axel, GRUDEN, Kristina. Potato virus Y infection hinders potato defence response and renders plants more vulnerable to Colorado potato beetle attack. In: ŠIRCA, Saša (ed.), GERIČ STARE, Barbara (ed.), RAZINGER, Jaka (ed.). Plant health for sustainable agriculture : book of abstracts : conference, 11-12 May 2015, Ljubljana, Slovenia. Ljubljana: Kmetijski inštitut Slovenije: = Agricultural Institute of Slovenia, 2015. Str. 30. ISBN 978-961-6505-72-7. [COBISS.SI-ID 3453519]

64. ZAGORŠČAK, Maja, PETEK, Marko, ZOUINE, Mohamed, GRUDEN, Kristina. Reference leaf transcriptomes for potato cultivars: Desiree and PW363. EMBnet.journal. 2015, vol. 21, str. e817. ISSN 2226-6089. http://journal.embnet.org/index.php/embnetjournal/article/view/817, DOI: 10.14806/ej.21.A.817. [COBISS.SI-ID 4260431]

65. DOBNIK, David, KRIŽNIK, Maja, PETEK, Marko, ŽEL, Jana, GRUDEN, Kristina. Small RNAs in potato-PVY interaction. In: RNA silencing in plants. [S. l.: Keystone symposia, 2015]. Str. 53. [COBISS.SI-ID 3349839]

66. KRIŽNIK, Maja, DOBNIK, David, PETEK, Marko, ŽEL, Jana, GRUDEN, Kristina. Identification and characterization of small RNAs involved in tolerance response of potato (Solanum tuberosum L.) to Potato virus Y (PVYNTN). In: 16th Triennial Meeting of the Virology Section of the European Association of Potato Research & 8th Annual Meeting of PVYwide Organization, May 31st -June 3rd 2016 Ljubljana, Slovenia. [S. l.: s. n., 2016]. Str. 28. [COBISS.SI-ID 3901007]

67. PETEK, Marko, ROTTER, Ana, KOGOVŠEK, Polona, BAEBLER, Špela, MITHÖFER, Axel, GRUDEN, Kristina. The influence of viral infection of host plant on Colorado potato beetle's growth and midgut gene expression. In: ICE 2016 : entomology without borders. XXV International Congress of Entomology, Orlando, Florida, USA, September 25-30. [S. l.: s. n.], 2016. [COBISS.SI-ID 4121679]

68. KARNIČAR, Katarina, DROBNAK, Igor, PETEK, Marko, MAGDEVSKA, Vasilka, HORVAT, Jaka, VIDMAR, Robert, BAEBLER, Špela, ROTTER, Ana, JAMNIK, Polona, FUJS, Štefan, TURK, Boris, FONOVIĆ, Marko, GRUDEN, Kristina, KOSEC, Gregor, PETKOVIĆ, Hrvoje. Integrated omics approaches provide strategies for rapid erythromycin yield increase in Saccharopolyspora erythraea. Microbial cell factories. 2016, vol. 15, no. 93, str. 1/17-17/17, ilustr. ISSN 1475-2859. http://microbialcellfactories.biomedcentral.com/articles/10.1186/s12934-016-0496-5, DiRROS - Digital repository of Slovenian research organizations, DOI: 10.1186/s12934-016-0496-5. [COBISS.SI-ID 4655992]

69. KOGOVŠEK, Polona, POMPE NOVAK, Maruša, PETEK, Marko, FRAGNER, Lena, WECKWERTH, Wolfram, GRUDEN, Kristina. Primary metabolism, phenylpropanoids and antioxidant pathways are regulated in potato as a response to Potato virus Y infection. In: 16th Triennial Meeting of the Virology Section of the European Association of Potato Research & 8th Annual Meeting of PVYwide Organization, May 31st -June 3rd 2016 Ljubljana, Slovenia. [S. l.: s. n., 2016]. Str. 26. [COBISS.SI-ID 3900751]

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71. KRIŽNIK, Maja, PETEK, Marko, DOBNIK, David, BAEBLER, Špela, POLLMANN, Stephan, KREUZE, Jan F., ŽEL, Jana, GRUDEN, Kristina. Small RNAs regulatory networks -linking developmental and immune signaling in potato. In: URLEP, Žiga (ed.), JUVAN, Peter (ed.). Book of abstracts. Elixir-si Launch & 11th CFGBC Symposium Data for Life, Ljubljana, September 20 - September 21, 2016. Ljubljana: Faculty of Medicine, 2016. Str. 23. ISBN 978-961-267-113-6. http://cfgbc.mf.uni-lj.si/2016data4life/abstracts/Book_of_Abstracts.pdf. [COBISS.SI-ID 4015951]

72. KRIŽNIK, Maja, DOBNIK, David, BAEBLER, Špela, PETEK, Marko, ŽEL, Jana, GRUDEN, Kristina. Vloga malih RNA pri obrambnem odgovoru krompirja na okužbo z virusom krompirja Y = Role of small RNAs in defense response of potato to PVY infection. In: PREMATE, Ester (ed.), et al. Zbornik konference. Biosfera - konferenca študentov bioloških znanosti, Ljubljana, 23. 9. 2016. Ljubljana: Društvo študentov biologije, 2016. Str. 67-68. ISBN 978-961-93936-1-1. http://biosfera.si/files/2016/09/Biosfera_zbornik.pdf?e9270b. [COBISS.SI-ID 4047951]

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74. PETEK, Marko, GRUDEN, Kristina. Development of RNAi-based pesticides targeting Colorado potato beetle. In: GORIČAR, Katja (ed.), HUDLER, Petra (ed.). Book of abstracts = Zbornik povzetkov. 12th Meeting of the Slovenian Biochemical Society with International Participation = 12. srečanje Slovenskega biokemijskega društva z mednarodno udeležbo, Bled 20 - 23 september 2017. Ljubljana: Slovenian Biochemical Society, 2017. Str. 52. ISBN 978-961-93879-4-8. [COBISS.SI-ID 4452943]

75. ZAGORŠČAK, Maja, BLEJEC, Andrej, RAMŠAK, Živa, PETEK, Marko, GRUDEN, Kristina. DiNAR: web application for Differential Network Analysis and visualisation in R. In: GRZEGORCZYK, Marco (ed.). Proceedings of the 32nd International Workshop on Statistical Modelling, Groningen, Netherlands, 3-7 July, 2017. Volume 2. 32nd International Workshop on Statistical Modelling, Groningen, Netherlands, 3-7 July, 2017. [S. l.: s. n., 2017]. Str. 201-202. https://iwsm2017.webhosting.rug.nl/IWSM_2017_V2.pdf. [COBISS.SI-ID 4552527]

76. DACINGER, Renata (interviewer), ČUČEK, Anja (interviewer, scenarist), GRUDEN, Kristina (interviewee), SABOTIČ, Jerica (interviewee), PETEK, Marko (interviewee), POLAJNAR, Jernej (interviewee), KUZMAN, Uroš (interviewee). Naravno proti škodljivcem. Ljubljana: Radiotelevizija Slovenija javni zavod, 2017. Ugriznimo znanost. http://4d.rtvslo.si/arhiv/ugriznimo-znanost/174477226. [COBISS.SI-ID 4356175]

77. PETEK, Marko (interviewee). Nova generacija pesticidov na osnovi RNA interference. Tromba : agencija za promocijo znanosti, kreativnosti in inovativnosti. 17. jul. 2017. ISSN 2350-5869. http://www.tromba.si/dr-marko-petek-nib-nova-generacija-pesticidov-na-osnovi-rna-interference/. [COBISS.SI-ID 4375119]

78. PETEK, Marko, ROTTER, Ana, KOGOVŠEK, Polona, MITHÖFER, Axel, GRUDEN, Kristina. Potato virus Y infection affects biotic stress signalling in potato and promotes growth of Colorado potato beetle. In: BIERE, Arjen (ed.), et al. Book of abstracts. Ljubljana: National Institute of Biology: Faculty of Computer and Informations Science, 2017. Str. 43. Cost action FA1405, CAMo (Crop-Arthropod Microbe) interactions. [COBISS.SI-ID 4257871]

79. BAEBLER, Špela, SVALINA, Miha, PETEK, Marko, STARE, Katja, ROTTER, Ana, POMPE NOVAK, Maruša, GRUDEN, Kristina. QuantGenius : implementation of a decision support system for qPCR-based gene quantification. In: GORIČAR, Katja (ed.), HUDLER, Petra (ed.). Book of abstracts = Zbornik povzetkov. 12th Meeting of the Slovenian Biochemical Society with International Participation = 12. srečanje Slovenskega biokemijskega društva z mednarodno udeležbo, Bled 20 - 23 september 2017. Ljubljana: Slovenian Biochemical Society, 2017. Str. 185. ISBN 978-961-93879-4-8. [COBISS.SI-ID 4458063]

80. BAEBLER, Špela, SVALINA, Miha, PETEK, Marko, STARE, Katja, ROTTER, Ana, POMPE NOVAK, Maruša, GRUDEN, Kristina. quantGenius : implementation of a decision support system for qPCR-based gene quantification. BMC bioinformatics. 2017, vol. 18, str. 1-11, ilustr. ISSN 1471-2105. https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1688-7, DiRROS - Digital repository of Slovenian research organizations, DOI: 10.1186/s12859-017-1688-7. [COBISS.SI-ID 4351055]

81. KRIŽNIK, Maja, PETEK, Marko, DOBNIK, David, RAMŠAK, Živa, BAEBLER, Špela, POLLMANN, Stephan, KREUZE, Jan F., ŽEL, Jana, GRUDEN, Kristina. Salicylic acid perturbs sRNA-gibberellin regulatory network in immune response of potato to Potato virus Y infection. Frontiers in plant science. 2017, vol. 8, str. 1-14. ISSN 1664-462X. https://www.frontiersin.org/articles/10.3389/fpls.2017.02192/full, DiRROS - Digital repository of Slovenian research organizations, DOI: 10.3389/fpls.2017.02192. [COBISS.SI-ID 4545103]

82. PETEK, Marko, GRUDEN, Kristina. Selection and validation of novel targets for RNAi-based control of Colorado potato beetle. In: Creating the plant RNAi research network : Cost Action CA15223 : book of abstracts. 1st iPLANTA Conference, February 15-17, 2017, University Sapienza and CNR Headquarters, Rome, Italy. [S. l.: s. n., 2017]. http://iplanta.univpm.it/sites/iplanta.univpm.it/files/Book%20of%20abstracts%20IPlanta%20Rome.pdf. [COBISS.SI-ID 4249679]

83. KRIŽNIK, Maja, PETEK, Marko, DOBNIK, David, RAMŠAK, Živa, BAEBLER, Špela, POLLMANN, Stephan, KREUZE, Jan F., ŽEL, Jana, GRUDEN, Kristina. Small RNAs regulatory networks - linking developmental and immune signaling in potato. In: BIERE, Arjen (ed.), et al. Book of abstracts. Ljubljana: National Institute of Biology: Faculty of Computer and Informations Science, 2017. Str. 32. Cost action FA1405, CAMo (Crop-Arthropod Microbe) interactions. [COBISS.SI-ID 4256847]

84. KRIŽNIK, Maja, PETEK, Marko, DOBNIK, David, RAMŠAK, Živa, BAEBLER, Špela, POLLMANN, Stephan, KREUZE, Jan F., ŽEL, Jana, GRUDEN, Kristina. Small RNAs regulatory networks - linking developmental and immune signalling in potato. In: GORIČAR, Katja (ed.), HUDLER, Petra (ed.). Book of abstracts = Zbornik povzetkov. 12th Meeting of the Slovenian Biochemical Society with International Participation = 12. srečanje Slovenskega biokemijskega društva z mednarodno udeležbo, Bled 20 - 23 september 2017. Ljubljana: Slovenian Biochemical Society, 2017. Str. 71. ISBN 978-961-93879-4-8. [COBISS.SI-ID 4455247]

85. ZAGORŠČAK, Maja, BLEJEC, Andrej, RAMŠAK, Živa, PETEK, Marko, STARE, Tjaša, GRUDEN, Kristina. DiNAR: revealing hidden patterns of plant signalling dynamics using Diferential Network Analysis in R. Plant methods. 2018, vol. 14, str. 1-9. ISSN 1746-4811. https://plantmethods.biomedcentral.com/articles/10.1186/s13007-018-0345-0, DiRROS - Digital repository of Slovenian research organizations, DOI: 10.1186/s13007-018-0345-0. [COBISS.SI-ID 4791631]

86. COLL RIUS, Anna, LUKAN, Tjaša, DUŠAK, Barbara, STARE, Katja, PETEK, Marko, HEIN, Ingo, GRUDEN, Kristina. The ethylene response factor StERF49 is a negative regulator of potato defence response against PVY. In: BAEBLER, Špela (ed.), et al. 7th Slovenian Symposium on Plant Biology with International Participation, Biotechnical Faculty, University of Ljubljana, September 17-18, 2018, Ljubljana, Slovenia. 1st electronic ed. Ljubljana: Silva Slovenica Publishing Centre, Slovenian Forestry Institute, 2018. Str. 66. ISBN 978-961-6993-44-9. https://doi.org/10.20315/SilvaSlovenica.0009. [COBISS.SI-ID 4842319]

87. AUSEC, Luka, JENKO BIZJAN, Barbara, KOKOŠAR, Janez, ROY CHOUDHURY, Amrita, ŠTAJDOHAR, Miha, GRUDEN, Kristina, KRIŽNIK, Maja, PETEK, Marko, RAMŠAK, Živa. Milestone M27 : user friendly data management and analysis environment for plant systems biology established and novel/improved multiomics data visualisation tool available : NIB final report. [S. l.: s. n.], 2018. http://projects.nib.si/hyp/wp-content/uploads/sites/6/2016/04/Hyp_M27_v1.FINAL_.pdf, DiRROS - Digital repository of Slovenian research organizations. [COBISS.SI-ID 5013583]

88. SCHOVILLE, Sean D., CHEN, Yolanda H., ANDERSSON, Martin N., BENOIT, Joshua B., BHANDARI, Anita, BOWSHER, Julia H., BREVIK, Kristian, CAPPELLE, Kaat, CHEN, Mei-Ju M., CHILDERS, Anna K., GRUDEN, Kristina, PETEK, Marko, et al. A model species for agricultural pest genomics : the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae). Scientific reports. 2018, vol. 8, str. 1-18, ilustr. ISSN 2045-2322. HttP://dx.doi.org/10.1038/s41598-018-20154-1, DiRROS - Digital repository of Slovenian research organizations, DOI: 10.1038/s41598-018-20154-1. [COBISS.SI-ID 4626767]

89. TUMBAS ŠAPONJAC, Vesna, PETEK, Marko, PAIVA, J.A.P. One year of short term scientific mission in the frame of the COST action 15223 : developing synergies, competences and skills om [!] RNAi. In: RNAi: the future of cross talk : focus on RNAi Technology (WG1) and Applications (WG2) : iPLANTA COST Action CA15223 : abstract book. 2nd iPLANTA Conference, Faculty of Biology, Adam Mickiewicz University, Poznań, Poland, February, 14-16, 2018. [S. l.: s. n., 2018]. Str. 49. [COBISS.SI-ID 4623439]

90. KRIŽNIK, Maja, PETEK, Marko, DOBNIK, David, RAMŠAK, Živa, BAEBLER, Špela, POLLMANN, Stephan, KREUZE, Jan F., ŽEL, Jana, GRUDEN, Kristina. Salicylic acid perturbs sRNA-gibberellin regulatory network in immune response of potato (Solanum tuberosum L.) to Potato virus Y [sup] NTN. In: BAEBLER, Špela (ed.), et al. 7th Slovenian Symposium on Plant Biology with International Participation, Biotechnical Faculty, University of Ljubljana, September 17-18, 2018, Ljubljana, Slovenia. 1st electronic ed. Ljubljana: Silva Slovenica Publishing Centre, Slovenian Forestry Institute, 2018. Str. 73. ISBN 978-961-6993-44-9. https://doi.org/10.20315/SilvaSlovenica.0009. [COBISS.SI-ID 4843343]

91. KRIŽNIK, Maja, PETEK, Marko, DOBNIK, David, RAMŠAK, Živa, BAEBLER, Špela, POLLMANN, Stephan, KREUZE, Jan F., ŽEL, Jana, GRUDEN, Kristina. Salicylic acid perturbs sRNA-gibberellin regulatory network in immune response of potato to Potato virus Y infection. In: SYSBIO 2018 - Advanced Lecture Course on Systems Biology, Feb. 28 - Mar. 6, 2018, Innsbruck, Austria. [S. l.: s. n., 2018]. Str. 89. http://sysbio-course.org/sysbio2018/pub/SysBio2018_Abstract%20Book_final.pdf. [COBISS.SI-ID 4636751]

92. ZAGORŠČAK, Maja, BLEJEC, Andrej, RAMŠAK, Živa, PETEK, Marko, GRUDEN, Kristina. Shiny application for DIfferential Network Analysis and dynamic visualisation in R. In: SYSBIO 2018 - Advanced Lecture Course on Systems Biology, Feb. 28 - Mar. 6, 2018, Innsbruck, Austria. [S. l.: s. n., 2018]. Str. 104. http://sysbio-course.org/sysbio2018/pub/SysBio2018_Abstract%20Book_final.pdf. [COBISS.SI-ID 4637007]

93. PETEK, Marko. Testing bacterially produced dsRNA for insect pest control. In: Topical application of RNAi : progress and possibilities : COST Action IPLANTA CA15223. [S. l.,: s. n.]. 2018, 1-29. https://iplanta.univpm.it/sites/iplanta.univpm.it/files/Rothamsted/MarkoPetek_Rothamsted_2018.pdf. [COBISS.SI-ID 5148239]

94. PETEK, Marko, GRUDEN, Kristina. Testing double-stranded RNAs for crop protection against Colorado Potato Beetle. In: Three-way interactions between plants, microbes and arthropods: impacts, mechanisms and utilisation. 3rd Annual Meeting of the COST Action FA1405 in collaboration with Institute of Earth Systems University of Malta, 24-26 January, 2018, Malta. [S. l.: s. n., 2018]. Str. 27. [COBISS.SI-ID 4624207]

95. PETEK, Marko, GRUDEN, Kristina. Testing RNAi pesticide targets in Colorado potato beetle. In: BAEBLER, Špela (ed.), et al. 7th Slovenian Symposium on Plant Biology with International Participation, Biotechnical Faculty, University of Ljubljana, September 17-18, 2018, Ljubljana, Slovenia. 1st electronic ed. Ljubljana: Silva Slovenica Publishing Centre, Slovenian Forestry Institute, 2018. Str. 7. ISBN 978-961-6993-44-9. https://doi.org/10.20315/SilvaSlovenica.0009. [COBISS.SI-ID 4828239]

96. PETEK, Marko, GRUDEN, Kristina. Testing the activity of double-stranded RNAs against Colorado potato beetle. In: RNAi: the future of cross talk : focus on RNAi Technology (WG1) and Applications (WG2) : iPLANTA COST Action CA15223 : abstract book. 2nd iPLANTA Conference, Faculty of Biology, Adam Mickiewicz University, Poznań, Poland, February, 14-16, 2018. [S. l.: s. n., 2018]. Str. 29. [COBISS.SI-ID 4623183]

97. LÓPEZ-GALIANO, María José, GARCÍA-ROBLES, Inmaculada, RUIZ-ARROYO, Víctor Manuel, SANCHÍS OLTRA, Sara, PETEK, Marko, RAUSELL, Carolina, M. DOLORES, Real. Colorado potato beetle chymotrypsin genes are differentially regulated in larval midgut in response to the plant defense inducer hexanoic acid or the Bacillus thuringiensis Cry3Aa toxin. Journal of invertebrate pathology. 2019, vol. 166, str. 1-5. ISSN 0022-2011. https://doi.org/10.1016/j.jip.2019.107224, DOI: 10.1016/j.jip.2019.107224. [COBISS.SI-ID 5147215]

98. JUTERŠEK, Mojca, PETEK, Marko, GRUDEN, Kristina, BAEBLER, Špela. Development and improvement of insect sex pheromone bioproduction in plants using systems biology approaches. In: KISOVEC, Matic (ed.). Book of abstracts = Knjiga povzetkov. 13th Meeting of the Slovenian Biochemical Society with International Participation = 13. srečanje Slovenskega biokemijskega društva z mednarodno udeležbo, Dobrna, 24 - 27 September 2019. Ljubljana: Slovenian Biochemical Society, 2019. Str. 105. ISBN 978-961-93879-8-6. [COBISS.SI-ID 5213775]

99. JUTERŠEK, Mojca, PETEK, Marko, BAEBLER, Špela, GRUDEN, Kristina. Discovery of candidate genes for irregular monoterpene synthesis in Planococcus citri, using transcriptome analysis. In: TOPOLE, Martin (ed.), et al. Knjiga povzetkov : science of the future how to stay up-to-date with your research! = Book of abstracts. 11. študentska konferenca Mednarodne podiplomske šole Jožefa Stefana in 13. dneva mladih raziskovalcev (Konferenca KMBO), 15. in 16. april 2019, Planica, Slovenija = 11th Jožef Stefan International Postgraduate School Students' Conference and 13th Young Researchers' Day, 15th and 16th May 2019, Planica, Slovenia. Ljubljana: Mednarodna podiplomska šola Jožefa Stefana: = Jožef Stefan International Postgraduate School: Inštitut Jožef Stefan: = Jožef Stefan Institute, 2019. Str. 61. http://ipssc.mps.si/Proceedings/Proceedings2019.pdf. [COBISS.SI-ID 5076559]

100. GRUDEN, Kristina, PETEK, Marko. Does ingestion of dsRNAs influence Colorado potato beetle gut microbiome?. In: Phytobiomes and plant health : from basics to applications : book of abstracts. COST FA1405, Final Meeting, 23-25 January 2019, Thessaloniki, Greece. [S. l.: s. n., 2019]. Str. 7. [COBISS.SI-ID 4981071]

101. COLL RIUS, Anna, LUKAN, Tjaša, MCLELLAN, Hazel, PETEK, Marko, BIRCH, Paul R.J., PRAT, Salomé, GRUDEN, Kristina. The ethylene response factor StERF49 negatively regulates potato immune response during potato virus Y infection. In: IS-MPMI, XVIII Congres, July 14-18, 2019, Glasgow, Scotland. XVIII International Congress on Molecular Plant-Microbe Interactions, July 14-18, 2019, Glasgow, Scotland. [Glasgow: s. n., 2019]. https://ismpmi.confex.com/ismpmi/2019/meetingapp.cgi/Paper/3187. [COBISS.SI-ID 5138255]

102. BLEJEC, Andrej, BAEBLER, Špela, COLL RIUS, Anna, PETEK, Marko, RAMŠAK, Živa, ZAGORŠČAK, Maja, GRUDEN, Kristina. pISA-tree - being FAIR on the institutional level : 3rd Annual MAQC Society Conference in Collaboration with CHARME, April 8-10, 2019, Riva Del Garda, Trentino, Italy. [COBISS.SI-ID 5102671]

103. COLL RIUS, Anna, LUKAN, Tjaša, MCLELLAN, Hazel, STARE, Katja, PETEK, Marko, BIRCH, Paul R.J., PRAT, Salomé, GRUDEN, Kristina. The potato transcription factor StERF49 increases susceptibility to potato virus Y. In: KISOVEC, Matic (ed.). Book of abstracts = Knjiga povzetkov. 13th Meeting of the Slovenian Biochemical Society with International Participation = 13. srečanje Slovenskega biokemijskega društva z mednarodno udeležbo, Dobrna, 24 - 27 September 2019. Ljubljana: Slovenian Biochemical Society, 2019. Str. 25. ISBN 978-961-93879-8-6. [COBISS.SI-ID 5215055]

104. PETEK, Marko, ZAGORŠČAK, Maja, RAMŠAK, Živa, ZOUINE, Mohamed, GRUDEN, Kristina. Robust de novo assembly of tetraploid potato transcriptomes. In: KISOVEC, Matic (ed.). Book of abstracts = Knjiga povzetkov. 13th Meeting of the Slovenian Biochemical Society with International Participation = 13. srečanje Slovenskega biokemijskega društva z mednarodno udeležbo, Dobrna, 24 - 27 September 2019. Ljubljana: Slovenian Biochemical Society, 2019. Str. 108. ISBN 978-961-93879-8-6. [COBISS.SI-ID 5217359]

105. KRIŽNIK, Maja, PETEK, Marko, DOBNIK, David, RAMŠAK, Živa, BAEBLER, Špela, POLLMANN, Stephan, ŽEL, Jana, GRUDEN, Kristina. The role of small RNA regulatory networks in tolerance and resistance responses of potato to PVY infection. In: KISOVEC, Matic (ed.). Book of abstracts = Knjiga povzetkov. 13th Meeting of the Slovenian Biochemical Society with International Participation = 13. srečanje Slovenskega biokemijskega društva z mednarodno udeležbo, Dobrna, 24 - 27 September 2019. Ljubljana: Slovenian Biochemical Society, 2019. Str. 107. ISBN 978-961-93879-8-6. [COBISS.SI-ID 5217103]

106. PETEK, Marko, COLL RIUS, Anna, LUKAN, Tjaša, DUŠAK, Barbara, STARE, Katja, GRUDEN, Kristina. Silencing ethylene response factor STERF49 reveals its role as negative regulator of potato defence response against PVY. In: What future for RNAi-based products : RNAi modified plants or spray products : iPLANTA COST Action CA15223 : book of abstracts : oral presentations. [S. l.: s. n., 2019]. Str. [15]. https://www.dropbox.com/s/bmhnvsmeo1chtk3/3rd%20iPLANTA%20conference%20Oeiras%20book%20of%20abstracts%20Orals.pdf?dl=0. [COBISS.SI-ID 5147727]

107. BAEBLER, Špela, KRIŽNIK, Maja, PETEK, Marko, DOBNIK, David, RAMŠAK, Živa, POLLMANN, Stephan, ŽEL, Jana, GRUDEN, Kristina. Small RNAs as an important regulatory layer mediating tolerance to potato virus Y in potato. In: Plant genomes in a changing environment, Wellcome Genome Campus Conference Centre, Hinxton, Cambridge, UK, 16-18 October 2019. [Cambridge?: s. n., 2019]. Str. p4. [COBISS.SI-ID 5219919]

108. BAEBLER, Špela, JUTERŠEK, Mojca, PETEK, Marko, MORENO, Elena, VAZQUEZ-VILAR, Marta, FERNÁNDEZ, Asun, GERASYMENKO, Iryna, HAUMANN, Elisabeth, KALLAM, Kalyani, VACAS, Sandra, NAVARRO-LLOPIS, Vicente, MARZO BARGUES, Javier, GRUDEN, Kristina, NAVARRO FUERTES, Ismael, PATRON, Nicola, WARZECHA, Heribert, ORZAEZ, Diego. Sustainable bioproduction of pheromones for insect pest control in agriculture. In: Advances in industrial biotechnology : renewable feedstocks and synthetic pathways for production of fine chemicals. 9th International CeBiTec Research Conference, Center for Interdisciplinary Research (ZiF), Bielefeld University, September 23 - 25, 2019. [Bielefeld?: s. n., 2019]. Str. 4. [COBISS.SI-ID 5221455]

109. PETEK, Marko, ZAGORŠČAK, Maja, RAMŠAK, Živa, ZOUINE, Mohamed, GRUDEN, Kristina. Towards pan-transcriptome of potato - robust assembly of transcriptomes for three tetraploid genotypes. In: Yield & nutrition : abstracts, poster presentations : XVI Solanaceae Conference : Jerusalem, Israel, September 15-19, 2019. XVI Solanaceae Conference, Jerusalem, Israel, September 15-19, 2019. [S. l.: s. n., 2019]. Str. [106-107]. https://f86545e9-53da-4f25-8611-7604e1ee7fca.filesusr.com/ugd/349100_a264558d9be141afbcf485493959c245.pdf. [COBISS.SI-ID 40653829]

110. GRUDEN, Kristina, LIDOY, Javier, PETEK, Marko, PODPEČAN, Vid, FLORS, V., PAPADOPOULOU, K.K., PAPPAS, M., MEDINA, A.M., BEJARANO, E., RAMŠAK, Živa, KRIŽNIK, Maja, PREROSTOVA, S., LOPEZ RAEZ, J.A., VANKOVA, R., POZO, M.J. Towards understanding of the molecular signalling mechanisms in multiway interactions of crops with arthropods and microorganisms. In: Phytobiomes and plant health : from basics to applications : book of abstracts. COST FA1405, Final Meeting, 23-25 January 2019, Thessaloniki, Greece. [S. l.: s. n., 2019]. Str. 3. [COBISS.SI-ID 4980815]

111. PETEK, Marko, ZAGORŠČAK, Maja, RAMŠAK, Živa, SANDERS, Sheri, TOMAŽ, Špela, TSENG, Elizabeth, ZOUINE, Mohamed, COLL RIUS, Anna, GRUDEN, Kristina. Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato. Scientific data. 2020, vol. 7, article no. 249, str. 1-15, ilustr. ISSN 2052-4463. https://www.nature.com/articles/s41597-020-00581-4, DiRROS - Digital repository of Slovenian research organizations, DOI: 10.1038/s41597-020-00581-4. [COBISS.SI-ID 27695619]

112. COLL RIUS, Anna, LUKAN, Tjaša, STARE, Katja, PETEK, Marko, PRAT, Salomé, GRUDEN, Kristina. The ethylene response factor StERF49 increases susceptibility of potato to potato virus Y. In: Plant genomes in a changing environment 2020 : virtual conference : 12.-14- October 2020. [Hinxton: Wellcome Genome Campus], 2020. Str. p8. [COBISS.SI-ID 37834243]

113. COLL RIUS, Anna, PETEK, Marko, LUKAN, Tjaša, GRUDEN, Kristina. Exploring the role of potato Pti5 in hypersensitive response-conferred resistance to Potato virus Y using short hairpin RNA-mediated gene silencing. Bethesda: NCBI, 2020. 1 spletni vir. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE136877. [COBISS.SI-ID 274362115]

114. GRUDEN, Kristina, PETEK, Marko, PODPEČAN, Vid, et al. Ménage à trois : unraveling the mechanisms regulating plant-microbe-arthropod interactions. Trends in Plant Science. [Print ed.]. 2020, vol. 25, no. 12, str. 1215-1226. ISSN 1360-1385. DOI: 10.1016/j.tplants.2020.07.008. [COBISS.SI-ID 47574275]

115. GRUDEN, Kristina (author of introduction, etc.), PETEK, Marko. Rastline niso same - do bolj učinkovite in okolju prijazne pridelave hrane s pomočjo mikroorganizmov : sporočilo za javnost. Nacionalni inštitut za biologijo : NIB Ljubljana. 22. sep. 2020. https://www.nib.si/aktualno/novice/1457-sporocilo-za-javnost-rastline-niso-same-do-bolj-ucinkovite-in-okolju-prijazne-pridelave-hrane-s-pomocjo-mikroorganizmov. [COBISS.SI-ID 39215363]

116. BAEBLER, Špela (scenarist, photographer), GRUDEN, Kristina (scenarist). Sistemska biologija za rastline prihodnosti. Ljubljana: Nacionalni inštitut za biologijo, 2020. 1 spletni vir (1 videodatoteka (3 min, 40 sek)), barve, zvok. https://youtu.be/OggsAAF_bJM. [COBISS.SI-ID 36612867]

117. KRIŽNIK, Maja, BAEBLER, Špela, PETEK, Marko, DOBNIK, David, RAMŠAK, Živa, POLLMANN, Stephan, ŽEL, Jana, GRUDEN, Kristina. Small RNA regulatory networks in tolerance and resistance responses of potato to potato virus Y infection. In: 8th Plant Genomics & Gene Editing Congress : Rotterdam, Netherlands : poster presentation abstracts. Rotterdam: Global Engage's, 2020. Str. p7. http://www.globalengage.co.uk/posters/pgc20.pdf. [COBISS.SI-ID 40464901]

118. JUTERŠEK, Mojca, PETEK, Marko, GRUDEN, Kristina, BAEBLER, Špela. Transcriptome analysis of a Nicotiana benthamiana biofactory with stunted growth and prospects for its improvement. In: Plant genomes in a changing environment 2020 : virtual conference : 12.-14- October 2020. [Hinxton: Wellcome Genome Campus], 2020. Str. p18. [COBISS.SI-ID 37848067]

119. GRUDEN, Kristina (interviewee), PETEK, Marko (interviewee), RAZINGER, Jaka (interviewee). Trendi v rastlinskih znanostih : RTV Slovenija, oddaja Ljudje in zemlja, 1. nov. 2020. [COBISS.SI-ID 38153475]

120. CHRISTIAENS, Olivier, PETEK, Marko, SMAGGHE, Guy, TANING, Clauvis Nji Tizi. The use of nanocarriers to improve the efficiency of RNAi-based pesticides in agriculture. In: FRACETO, Leonardo F. (ed.). Nanopesticides : from research and development to mechanisms of action and sustainable use in agriculture. Cham: Springer, cop. 2020. Str. 49-68, ilustr. ISBN 978-3-030-44873-8. https://link.springer.com/content/pdf/10.1007%2F978-3-030-44873-8.pdf. [COBISS.SI-ID 22635267]

121. PETEK, Marko, COLL RIUS, Anna, FERENC, Rok, RAZINGER, Jaka, GRUDEN, Kristina. Validating the potential of double-stranded RNA targeting Colorado potato beetle mesh gene in laboratory and field trials. Frontiers in plant science. 2020, vol. 11, article no.1250, str. 1-9. ISSN 1664-462X. DiRROS - Digital repository of Slovenian research organizations, DOI: 10.3389/fpls.2020.01250. [COBISS.SI-ID 25419523]

122. ŽUPANIČ, Anže, ZAGORŠČAK, Maja, GRUDEN, Kristina, PETEK, Marko, BLEKER, Carissa, BAEBLER, Špela, RAMŠAK, Živa, BLEJEC, Andrej. ADAPT and data management : potatoes under climate stress - the ADAPT project. In: DEL PICO, Eva Martin. ELIXIR all hands meeting : 1-11 June 2021. [S. l.: s. n.], 2021. https://drive.google.com/file/d/1xZadWrQAwN2gHQTS-5VxPdxgU78vHYa4/view. [COBISS.SI-ID 67304451]

123. ZAGORŠČAK, Maja, PETEK, Marko. A comprehensive guide to potato transcriptome assembly. In: DOBNIK, David (ed.), et al. Solanum tuberosum : methods and protocols. New York: Humana Press, cop. 2021. Str. 155-192, ilustr. Methods in molecular biology, 2354. ISBN 978-1-0716-1608-6, ISBN 978-1-0716-1609-3. ISSN 1064-3745. DiRROS - Digital repository of Slovenian research organizations. [COBISS.SI-ID 76788483]

124. ZAGORŠČAK, Maja, PETEK, Marko, RAMŠAK, Živa. Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato : version v1.0. Genève: Zenodo, 2021. 1 spletni vir. https://doi.org/10.5281/zenodo.4893085, https://github.com/NIB-SI/_p_stRT/, DOI: 10.5281/zenodo.4893085. [COBISS.SI-ID 303670019]

125. JUTERŠEK, Mojca, PETEK, Marko, MORENO, Elena, VASQUEZ-VILLAR, M., FERNÁNDEZ, A., GERASYMENKO, Iryna, HAUMANN, Elisabeth, KALLAM, Kalyani, VACAS GONZALES, S., GRUDEN, Kristina, NAVARRO FUERTES, Ismael, PATRON, Nicola, NAVARRO FUERTES, Ismael, WARZECHA, Heribert, ORZAEZ, Diego, BAEBLER, Špela, MARZO BARGUEI, J. Developing insect sex pheromone production in plants with the support of transcriptomic data. In: KATALINIĆ, Maja (ed.), et al. FEBS 2021 : The 20th FEBS Young Scientistsʼ forum : virtual event : 15-18 June 2021 : Programme and abstract book. [Zagreb]: The Federation of European Biochemical Societies (FEBS): Croatian Society of Biochemistry and Molecular Biology: Slovenian Biochemical Society, 2021. Str. 140. https://www.eventvirtual.eu/cmVirtualPortal/lib/czechin/YSF21/dist/ABYSF.pdf. [COBISS.SI-ID 67977731]

126. DERMASTIA, Marina, ŠKRLJ, Blaž, STRAH, Rebeka, ANŽIČ, Barbara, TOMAŽ, Špela, KRIŽNIK, Maja, SCHÖNHUBER, Christina, RIEDLE-BAUER, Monika, RAMŠAK, Živa, PETEK, Marko, KLADNIK, Aleš, LAVRAČ, Nada, GRUDEN, Kristina, ROITSCH, Thomas, BRADER, Günter, POMPE NOVAK, Maruša. Differential response of grapevine to Infection with ʼCandidatus Phytoplasma solaniʼ in early and late growing season through complex regulation of mRNA and small RNA transcriptomes. International journal of molecular sciences. 1 Apr. 2021, vol. 22, no. 7, str. 3531-1-3531-28. ISSN 1422-0067. https://www.mdpi.com/1422-0067/22/7/3531, Repository of the University of Ljubljana – RUL . [COBISS.SI-ID 58895619]

127. COLL RIUS, Anna, LUKAN, Tjaša, MCLELLAN, H., PETEK, Marko, BIRCH, P. R., PRÁT, Silvester, GRUDEN, Kristina. The ethylene response factor StERF49 increases susceptibility of potato to potato virus Y. In: 45th FEBS Congress Abstracts : The 45th FEBS Congress : 3-8 July 2021, Ljubljana, Slovenia : molecules of life: towards new horizons. [S. l.: FEBS, 2021]. 1 spletni vir. https://2021.febscongress.org/abstract_preview.aspx?idAbstractEnc=4424170095091098096097424170. [COBISS.SI-ID 152347139]

128. ŽIGON, Primož, PETEK, Marko, GRUDEN, Kristina, PRAPROTNIK, Eva, MODIC, Špela, ŽIBRAT, Uroš, KNAPIČ, Matej, DOLNIČAR, Peter, RAZINGER, Jaka. Preizkušanje različnih bioinsekticidov za zatiranje koloradskega hrošča = Efficacy of selected bioinsecticides against Colorado potato beetle. In: Novi izzivi v agronomiji 2021 : program simpozija in povzetki predavanj : spletni simpozij, [28. in 29. januar] 2021. [Ljubljana]: Slovensko agronomsko društvo = Slovenian Society of Agronomy, 2021. Str. 32-33. [COBISS.SI-ID 49115139]

129. PETEK, Marko. Primer ravnanja z biološkimi in biotehnološkimi podatki v okviru raziskovalnih projektov na NIB. In: Mreža znanja 2021 : Arnes, 24. in 25. november 2021, v živo na portalu Arnes Video. Ljubljana: [s. n.]. 2021, [17] str. prosojnic, ilustr. https://mrezaznanja.si/2021/11/08/primer-ravnanja-z-bioloskimi-in-biotehnoloskimi-podatki-v-okviru-raziskovalnih-projektov-na-nib/, https://video.arnes.si/watch/86k9nwzx16z2. [COBISS.SI-ID 93182723]

130. RAMŠAK, Živa, PETEK, Marko, BAEBLER, Špela. RNA sequencing analyses for deciphering potato molecular responses. In: DOBNIK, David (ed.), et al. Solanum tuberosum : methods and protocols. New York: Humana Press, cop. 2021. Str. 57-94, ilustr. Methods in molecular biology, 2354. ISBN 978-1-0716-1608-6, ISBN 978-1-0716-1609-3. ISSN 1064-3745. DiRROS - Digital repository of Slovenian research organizations. [COBISS.SI-ID 76791043]

131. PETEK, Marko, GRUDEN, Kristina, BAEBLER, Špela. Standardizacija in upravljanje z odprtimi podatki v biotehnoloških raziskavah. Časopis za kritiko znanosti. 2021, letn. 44 [i. e. 49], št. 282, str. 160-169, ilustr. ISSN 0351-4285. http://dirros.openscience.si/IzpisGradiva.php?id=13837&lang=slv, DiRROS - Digital repository of Slovenian research organizations, http://www.dlib.si/details/URN:NBN:SI:DOC-10THNQS1. [COBISS.SI-ID 58488835]

132. BAEBLER, Špela, LUKAN, Tjaša, COLL RIUS, Anna, KRIŽNIK, Maja, RAMŠAK, Živa, ZAGORŠČAK, Maja, POMPE NOVAK, Maruša, PETEK, Marko, BLEJEC, Andrej, GRUDEN, Kristina. Study of spatial responses in combination with network analysis reveals mechanisms of plant resistance to viruses. In: 45th FEBS Congress Abstracts : The 45th FEBS Congress : 3-8 July 2021, Ljubljana, Slovenia : molecules of life: towards new horizons. [S. l.: FEBS, 2021]. 1 spletni vir. https://2021.febscongress.org/abstract_preview.aspx?idAbstractEnc=4424170095092095099098424170. [COBISS.SI-ID 152357635]

133. PETEK, Marko. _I_T31_mealybug. [S. l.]: FAIRDOM, May 2022. 1 spletni vir. https://fairdomhub.org/investigations/550. [COBISS.SI-ID 273705475]

134. GODEC, Tim, PETEK, Marko, LUKAN, Tjaša, ŠTEFANIČ, Polonca, MANDIĆ-MULEC, Ines, GRUDEN, Kristina. Assembling complete genomes of potato endophytic microbes. In: STOPNIŠEK, Nejc (ed.), JANEŽIČ, Sandra (ed.). 1st Slovenian Microbiome Network Symposium : November 24, 2022 Bled, Slovenia. Maribor: Nacionalni laboratorij za zdravje, okolje in hrano, 2022. Str. 40. ISBN 978-961-6148-19-1. https://slovenianmicrobiome.net/assets/abstractBook_final.pdf. [COBISS.SI-ID 131871747]

135. PETEK, Marko, GODEC, Tim, LUKAN, Tjaša, ŠTEFANIČ, Polonca, MANDIĆ-MULEC, Ines, GRUDEN, Kristina, et al. Assembly of potato endophytes using Nanopore and Illumina sequencing. In: BAEBLER, Špela (ed.), et al. Plants in Changing Environment : International Conference of the Slovenian Society of Plant Biology : Biotechnical Faculty, University of Ljubljana, September 15-16, 2022, Ljubljana, Slovenia : [book of abstracts]. 1st electronic ed. Ljubljana: Slovenian Society of Plant Biology, 2022. Str. 44. ISBN 978-961-91014-5-2. https://www.plantslo.org/wp/wp-content/uploads/2022/09/PlantsInChangingEnvironment22AbstractBook.pdf. [COBISS.SI-ID 123923971]

136. ZRIMEC, Jan, ZAGORŠČAK, Maja, PETEK, Marko, RAMŠAK, Živa, GRUDEN, Kristina. Experimental evidence and community-based revision of potato gene models with automated and manual curation. In: Solanaceae 2022. XVII International Conference on the Plant Family of Solanaceae, November 1-5, 2022, Thessaloniki, Greece. [S. l.: s. n., 2022]. Str. 65. https://sol2022.web.auth.gr/wp-content/uploads/2022/10/BOOK-OF-ABSTRACTS-OF-XVII-Solanaceae2022.pdf. [COBISS.SI-ID 130285315]

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138. POMPE NOVAK, Maruša, STRAH, Rebeka, TOMAŽ, Špela, KRIŽNIK, Maja, RAMŠAK, Živa, PETEK, Marko, DERMASTIA, Marina, GRUDEN, Kristina. Grapevine in changing environment. In: BAEBLER, Špela (ed.), et al. Plants in Changing Environment : International Conference of the Slovenian Society of Plant Biology : Biotechnical Faculty, University of Ljubljana, September 15-16, 2022, Ljubljana, Slovenia : [book of abstracts]. 1st electronic ed. Ljubljana: Slovenian Society of Plant Biology, 2022. Str. 69. ISBN 978-961-91014-5-2. https://www.plantslo.org/wp/wp-content/uploads/2022/09/PlantsInChangingEnvironment22AbstractBook.pdf. [COBISS.SI-ID 121575171]

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141. FERNÁNDEZ, Rubèn Mateos, PETEK, Marko, JUTERŠEK, Mojca, GERASYMENKO, Iryna, BAEBLER, Špela, KALLAM, Kalyani, GIMENÉZ, Elena Moreno, GONDOLF, Janine, NORDMANN, Alfred, GRUDEN, Kristina, ORZAEZ, Diego, PATRON, Nicola. Insect pest management in the age of synthetic biology. Plant biotechnology journal. 2022, vol. 20, iss. 1, str. 25-36, ilustr. ISSN 1467-7644. https://onlinelibrary.wiley.com/doi/10.1111/pbi.13685, DiRROS - Digital repository of Slovenian research organizations, DOI: 10.1111/pbi.13685. [COBISS.SI-ID 81340163]
project: European Research Area Cofund Action ‘ERACoBioTech’ for the support of SUSPHIRE (Sustainable Production of Pheromones for Insect Pest Control in Agriculture) Horizon 2020 research and innovation programme under grant agreement No. 722361;
project: UK Biotechnology and Biological Sciences Research Council (BBSRC) Core Strategic Programme Grant (Genomes to Food Security) BB/CSP1720/1 and grant BB/R021554/1
project: Grant PCI2018-092893 and the FPU programme of the Spanish MINECO
project: FPI grant from the Generalitat Valenciana
project: Deutsche Forschungsgemeinschaft (DFG)
project: P4-0165 Biotechnology and plant systems biology; funder: ARRS
project: Z4-706 Using RNA interference and systems biology approaches for validation of insecticide targets in Colorado potato beetle guts; funder: ARRS

142. LEGAT, Dunja (discussant), BONAČ, Marko (discussant), PUŠNIK, Miro (discussant), ŠTEBE, Janez (discussant), PETEK, Marko (discussant). Izzivi Slovenske skupnosti odprte znanosti : okrogla miza na konferenci Dan odprte znanosti 2022, 11. 10. 2022, Ljubljana. [COBISS.SI-ID 125707267]

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144. LIU, Tianyuan, SALGUERO, Pedro, PETEK, Marko, MARTINEZ-MIRA, Carlos, BALZANO-NOGUEIRA, Leandro, RAMŠAK, Živa, MCINTYRE, Lauren, GRUDEN, Kristina, TARAZONA, Sonia, CONESA, Ana. PaintOmics 4 : new tools for the integrative analysis of multi-omics datasets supported by multiple pathway databases. Nucleic acids research. 2022, vol. 50, iss. w1, str. w551-w559, ilustr. ISSN 0305-1048. https://doi.org/10.1093/nar/gkac352, DiRROS - Digital repository of Slovenian research organizations, DOI: 10.1093/nar/gkac352. [COBISS.SI-ID 110574851]

145. PETEK, Marko, TOMAŽ, Špela, GRUDEN, Kristina. Phasing of potato genomic locus encoding TGA transcription factors using nanopore sequencing. In: Solanaceae 2022. XVII International Conference on the Plant Family of Solanaceae, November 1-5, 2022, Thessaloniki, Greece. [S. l.: s. n., 2022]. Str. 172. https://sol2022.web.auth.gr/wp-content/uploads/2022/10/BOOK-OF-ABSTRACTS-OF-XVII-Solanaceae2022.pdf. [COBISS.SI-ID 130293763]

146. PETEK, Marko, ZAGORŠČAK, Maja, BLEJEC, Andrej, RAMŠAK, Živa, COLL RIUS, Anna, BAEBLER, Špela, GRUDEN, Kristina. pISA-tree : a data management framework for life science research projects using a standardised directory tree. Scientific data. 2022, vol. 9, str. 1-9, ilustr. ISSN 2052-4463. https://doi.org/10.1038/s41597-022-01805-5, DiRROS - Digital repository of Slovenian research organizations, DOI: 10.1038/s41597-022-01805-5. [COBISS.SI-ID 130302467]

147. ŽIGON, Primož, PETEK, Marko, GRUDEN, Kristina, PRAPROTNIK, Eva, MODIC, Špela, BORDON, Aleks, DOLNIČAR, Peter, RAZINGER, Jaka. Preizkušanje alternativnih možnosti obvladovanja koloradskega hrošča (Leptinotarsa decemlineata) z uporabo bioinsekticidov = Testing of alternative approaches of Colorado potato beetle (Leptinotarsa decemlineata) management with the use of bioinsecticides. In: TRDAN, Stanislav (ed.). 15. slovensko posvetovanje o varstvu rastlin z mednarodno udeležbo = 15th Slovenian Conference on Plant Protection with International Participation : izvlečki referatov = abstract volume : 1.-2. marec 2022, Portorož, Slovenija. Ljubljana: Društvo za varstvo rastlin Slovenije: = Plant Protection Society of Slovenia, 2022. Str. 22-23. ISBN 978-961-93447-8-1. [COBISS.SI-ID 99587587]

148. BLEJEC, Andrej, ZAGORŠČAK, Maja, PETEK, Marko. R interface for SEEK API : version v1.02. Genève: Zenodo, 2022. 1 spletni vir. https://doi.org/10.5281/zenodo.7244832, https://github.com/NIB-SI/seekr/, DOI: 10.5281/zenodo.7244832. [COBISS.SI-ID 303677187]

149. PETEK, Marko, ZAGORŠČAK, Maja, GRUDEN, Kristina. Samo z urejenimi in dostopnimi znanstvenimi podatki bomo prišli do rešitev za boljšo prihodnost. Nacionalni inštitut za biologijo : NIB Ljubljana. 12. dec. 2022, 1 spletni vir. https://www.nib.si/aktualno/novice/1702-samo-z-urejenimi-in-dostopnimi-znanstvenimi-podatki-bomo-prisli-do-resitev-za-boljso-prihodnost. [COBISS.SI-ID 223846659]

150. TOMAŽ, Špela, PETEK, Marko, LUKAN, Tjaša, POGAČAR, Karmen, STARE, Katja, TEIXEIRA PRATES, Erica, JACOBSON, Daniel A., ZRIMEC, Jan, BAJC, Gregor, BUTALA, Matej, POMPE NOVAK, Maruša, TALER-VERČIČ, Ajda, USENIK, Aleksandra, TURK, Dušan, COLL RIUS, Anna, GRUDEN, Kristina, et al. TGACG-binding (TGA) transcription factors in potato (Solanum tuberosum L.). In: BAEBLER, Špela (ed.), et al. Plants in Changing Environment : International Conference of the Slovenian Society of Plant Biology : Biotechnical Faculty, University of Ljubljana, September 15-16, 2022, Ljubljana, Slovenia : [book of abstracts]. 1st electronic ed. Ljubljana: Slovenian Society of Plant Biology, 2022. Str. 38. ISBN 978-961-91014-5-2. https://www.plantslo.org/wp/wp-content/uploads/2022/09/PlantsInChangingEnvironment22AbstractBook.pdf. [COBISS.SI-ID 121574915]

151. JUTERŠEK, Mojca, PETEK, Marko, RAMŠAK, Živa, GIMENÉZ, Elena Moreno, GIANOGLIO, Silvia, FERNÁNDEZ, Rubèn Mateos, ORZAEZ, Diego, GRUDEN, Kristina, BAEBLER, Špela. Transcriptional deregulation of stress-growth balance in Nicotiana benthamiana biofactories producing insect sex pheromones. Frontiers in plant science. 26. Okt. 2022, vol. 13, [article no.] 941338, str. 1-14. ISSN 1664-462X. https://doi.org/10.3389/fpls.2022.941338, DiRROS - Digital repository of Slovenian research organizations, DOI: 10.3389/fpls.2022.941338. [COBISS.SI-ID 127685123]

152. GODEC, Tim, PETEK, Marko. Using ATAC-seq to study chromatin level regulation of response to stress in potato. In: NOVAK, Rok (ed.), et al. 14. študentska konferenca Mednarodne podiplomske šole Jožefa Stefana = 14th Jožef Stefan International Postgraduate School Students' Conference : knjiga povzetkov = book of abstracts : 1. - 3. junij 2022, Kamnik, Slovenia = 1st - 3rd June, 2022, Kamnik, Slovenia. 14. študentska konferenca Mednarodne podiplomske šole Jožefa Stefana, 1. - 3. junij 2022, Kamnik, Slovenia = 14th Jožef Stefan International Postgraduate School Students' Conference, 1st - 3rd June, 2022, Kamnik, Slovenia. Ljubljana: Jožef Stefan Institute: Jožef Stefan International Postgraduate School, 2022. Str. 88. http://ipssc.mps.si/Book_of_Abstracts.pdf. [COBISS.SI-ID 129403907]

153. POGAČAR, Karmen, GRUNDNER, Maja, ŽIGON, Primož, COLL RIUS, Anna, PANEVSKA, Anastasija, LUKAN, Tjaša, PETEK, Marko, RAZINGER, Jaka, GRUDEN, Kristina, SEPČIĆ, Kristina. Aegerolysin-based insecticidal complexes from edible oyster mushrooms enable resistance to Colorado potato beetle in potato. In: 29èmes Rencontres en Toxinologie = 29th Meeting on Toxinology : 30 novembre - 01 décembre 2023 = 30 November - 1 December, 2023, Paris, France : Toxines: De la nature au labo. Paris: SFET = Société Française pour l’Étude des Toxines, 2023. Str. 31. [COBISS.SI-ID 174734595]

154. GODEC, Tim, PETEK, Marko, LUKAN, Tjaša, ŠTEFANIČ, Polonca, MANDIĆ-MULEC, Ines, GRUDEN, Kristina. Endophytic bacteria isolated from sterile potato plants: a genomic approach to characterization. In: SEPČIĆ, Kristina (ed.), PAVŠIČ, Miha (ed.). 15th Meeting of the Slovenian Biochemical Society with International Participation = 15. srečanje Slovenskega biokemijskega društva z mednarodno udeležbo : book of abstracts = zbornik povzetkov : Portorož, 20-23 September 2023 = [20.–23. september 2023, Portorož, Slovenija]. Ljubljana: Slovenian Biochemical Society: = Slovensko biokemijsko društvo, 2023. Str. 79, p29. ISBN 978-961-95941-1-7. https://portoroz2023.sbd.si/upload/docs/SBD2023_Portoroz-Book_of_Abstracts.pdf. [COBISS.SI-ID 165926915]

155. POGAČAR, Karmen, GRUNDNER, Maja, ŽIGON, Primož, COLL RIUS, Anna, PANEVSKA, Anastasija, LUKAN, Tjaša, PETEK, Marko, RAZINGER, Jaka, GRUDEN, Kristina, SEPČIĆ, Kristina. Environmentally friendly protection of potatoes against Colorado potato beetle. In: SEPČIĆ, Kristina (ed.), PAVŠIČ, Miha (ed.). 15th Meeting of the Slovenian Biochemical Society with International Participation = 15. srečanje Slovenskega biokemijskega društva z mednarodno udeležbo : book of abstracts = zbornik povzetkov : Portorož, 20-23 September 2023 = [20.–23. september 2023, Portorož, Slovenija]. Ljubljana: Slovenian Biochemical Society: = Slovensko biokemijsko društvo, 2023. Str. 96. ISBN 978-961-95941-1-7. https://portoroz2023.sbd.si/upload/docs/SBD2023_Portoroz-Book_of_Abstracts.pdf. [COBISS.SI-ID 166517763]

156. VOZELJ, Anže, GODEC, Tim, POGAČAR, Karmen, PETEK, Marko, LUKAN, Tjaša, GRUDEN, Kristina. Establishing protocol for inoculation of potato plants with Fusarium oxysporum to study complex plant microbial interactions. In: SEPČIĆ, Kristina (ed.), PAVŠIČ, Miha (ed.). 15th Meeting of the Slovenian Biochemical Society with International Participation = 15. srečanje Slovenskega biokemijskega društva z mednarodno udeležbo : book of abstracts = zbornik povzetkov : Portorož, 20-23 September 2023 = [20.–23. september 2023, Portorož, Slovenija]. Ljubljana: Slovenian Biochemical Society: = Slovensko biokemijsko društvo, 2023. Str. 97. ISBN 978-961-95941-1-7. https://portoroz2023.sbd.si/upload/docs/SBD2023_Portoroz-Book_of_Abstracts.pdf. [COBISS.SI-ID 167225859]

157. ŽIGON, Primož, PETEK, Marko, GRUDEN, Kristina, PRAPROTNIK, Eva, MODIC, Špela, DOLNIČAR, Peter, RAZINGER, Jaka. Laboratory and field evaluation of bioinsecticides for Colorado potato beetle (Leptinotarsa decemlineata, Coleoptera: Chrysomelidae) control. In: EAPR Pathology & Pests Section Meeting : 3rd to 6th September 2023 - Arras - France : Dealing with potato pathogens & pests in a context of global change. Arras: European Association for Potato Research: 2023. 2023, [1] str., ilustr. https://www.eapr-pathology2023.com/program. [COBISS.SI-ID 165259523]

158. RAZINGER, Jaka, PETEK, Marko, GRUDEN, Kristina, PRAPROTNIK, Eva, MODIC, Špela, DOLNIČAR, Peter, ŽIGON, Primož. Laboratory and field evaluation of entomopathogenetic fungi, bioinsecticides and RNAi for Colorado potato beetle (Leptinotarsa decemilineata, Coleoptera: Chrysomelidae) control. In: ECE2023, XII European Congress Of Entomology : book of abstracts : 16-20. 10. 2023, Cultural Conference Center of Heraklion, Crete, Greece. ECE2023, XII European Congress Of Entomology, 6-20. 10. 2023, Cultural Conference Center of Heraklion, Crete, Greece. [Heraklion: s. n., 2023]. Str. 295-296. [COBISS.SI-ID 172890371]

159. ZAGORŠČAK, Maja, BAEBLER, Špela, BLEJEC, Andrej, BLEKER, Carissa, KRIŽNIK, Maja, PETEK, Marko, RAMŠAK, Živa, TURK, Eva, ZRIMEC, Jan, ŽUPANIČ, Anže, GRUDEN, Kristina. Potato vs climate change : integrated multidisciplinary approach to investigate phenotypic and molecular responses to combined stresses. In: NADIŽAR, Nejc (ed.). 18th CFGBC Symposium : book of abstracts : Slovenia, 1st June 2023. Ljubljana: University of Ljubljana, Faculty of Medicine, 2023. Str. 15-16. http://cfgbc.mf.uni-lj.si/wp-content/uploads/bookofabstracts_2023cfgbcsym18.pdf. [COBISS.SI-ID 158818307]

160. D'ANNA, Flora, PARTON, Graham, BERKA, Karel, ZAVORALOVA, Karolina, BÖSL, Korbinian, ZAGORŠČAK, Maja, PETEK, Marko, et al. Project data management coordination. RDMkit. [2023], 1 spletni vir. https://rdmkit.elixir-europe.org/dm_coordination. [COBISS.SI-ID 147201027]

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162. PETEK, Marko, COLL RIUS, Anna, LUKAN, Tjaša, POGAČAR, Karmen, GRUDEN, Kristina, PANEVSKA, Anastasija, GRUNDNER, Maja, SEPČIĆ, Kristina, ŽIGON, Primož, RAZINGER, Jaka. Sphynx Protect: next generation potato-incorporated protectant against Colorado potato beetle. In: MLINAR, Tinkara (ed.), STRES, Špela (ed.). ITTC 16 : 16. Mednarodna konferenca o prenosu tehnologij = 16th International Technology Transfer Conference : 11. in 13. oktober 2023, Ljubljana, Slovenija =11th and 13th October 2023, Ljubljana, Slovenia : IS 2023 : let's innovate the future : [zbornik povzetkov = book of abstracts]. Ljubljana: Institut "Jožef Stefan", 2023. Str. 31-32, ilustr. Informacijska družba. ISBN 978-961-264-286-0. ISSN 2630-371X. http://library.ijs.si/Stacks/Proceedings/ITTC/ITTC_2023_Volume.pdf. [COBISS.SI-ID 186445315]

163. ROMERO-RODRÍGUEZ, Beatriz, PETEK, Marko, JIAO, Chen, KRIŽNIK, Maja, ZAGORŠČAK, Maja, FEI, Zhangjun, RODRÍGUEZ BEJARANO, Eduardo, GRUDEN, Kristina, CASTILLO, Araceli G. Transcriptional and epigenetic changes during tomato yellow leaf curl virus infection in tomato. BMC plant biology. 2023, vol. 23, article no. 651, str. 1-26, ilustr. ISSN 1471-2229. https://bmcplantbiol.biomedcentral.com/articles/10.1186/s12870-023-04534-y, DiRROS - Digital repository of Slovenian research organizations, DOI: 10.1186/s12870-023-04534-y. [COBISS.SI-ID 178693379]

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165. DERMASTIA, Marina, ŠKRLJ, Blaž, VALMARSKA, Anita, STRAH, Rebeka, POMPE NOVAK, Maruša, ANŽIČ, Barbara, TOMAŽ, Špela, KRIŽNIK, Maja, PETEK, Marko, KLADNIK, Aleš, LAVRAČ, Nada, GRUDEN, Kristina, et al. Understanding interactions of ‘Candidatus Phytoplasma solani’ with grapevine through the lens of complex networks. Phytopathogenic mollicutes. Jun. 2023, vol. 13, iss. 1, str. 9-10. ISSN 2249-4669. http://dx.doi.org/10.5958/2249-4677.2023.00005.1, DOI: 10.5958/2249-4677.2023.00005.1. [COBISS.SI-ID 155068931]

166. JUTERŠEK, Mojca, GERASYMENKO, Iryna, PETEK, Marko, VACAS, Sandra, NAVARRO FUERTES, Ismael, PATRON, Nicola, ORZAEZ, Diego, GRUDEN, Kristina, WARZECHA, Heribert, BAEBLER, Špela. Unravelling the biosynthesis of irregular polyprenyl backbone of the Planococcus citri (Insecta) sex pheromone. In: SEPČIĆ, Kristina (ed.), PAVŠIČ, Miha (ed.). 15th Meeting of the Slovenian Biochemical Society with International Participation = 15. srečanje Slovenskega biokemijskega društva z mednarodno udeležbo : book of abstracts = zbornik povzetkov : Portorož, 20-23 September 2023 = [20.–23. september 2023, Portorož, Slovenija]. Ljubljana: Slovenian Biochemical Society: = Slovensko biokemijsko društvo, 2023. Str. 36. ISBN 978-961-95941-1-7. https://portoroz2023.sbd.si/upload/docs/SBD2023_Portoroz-Book_of_Abstracts.pdf. [COBISS.SI-ID 166798595]

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171. CORRÊA, Régis L. (author, corresponding author), PETEK, Marko (author, corresponding author), VASLIN, Maite F. S. (author, corresponding author). Editorial : Mechanisms of plant host resistance against viruses. Frontiers in plant science. Oct. 2024, vol. 15, [art. no.] 1506089, str. 1-2. ISSN 1664-462X. https://doi.org/10.3389/fpls.2024.1506089, DiRROS - Digital repository of Slovenian research organizations, DOI: 10.3389/fpls.2024.1506089. [COBISS.SI-ID 213713155]

172. LUKAN, Tjaša, KRAIGHER, Barbara, STARE, Katja, POGAČAR, Karmen, GRUBAR, Teja, ZAGORŠČAK, Maja, PETEK, Marko, ŠTEFANIČ, Polonca, MANDIĆ-MULEC, Ines, GRUDEN, Kristina. An ERF transcription factor StPti5, a novel regulator of endophyte community maintenance in potato. In: Exploiting plant-microbiomes networks and synthetic communities to improve crops fitness : 1 st Annual Conference of the MiCropBiomes COST Action : Faculty of Sciences of the University of Porto, 11 to 12 September 2024. Porto: [s. n.], 2024. Str. 59. https://micropbiomes.eu/wp-content/uploads/2024/09/MiCropBiomes_1st-Annual-Conference_Abstract-Book.pdf. [COBISS.SI-ID 212342531]

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175. SEPČIĆ, Kristina, POGAČAR, Karmen, GRUNDNER, Maja, ŽIGON, Primož, COLL RIUS, Anna, PANEVSKA, Anastasija, LUKAN, Tjaša, PETEK, Marko, RAZINGER, Jaka, GRUDEN, Kristina. Lipid-binding insecticidal proteins from Pleurotus mushrooms for controlling coleopteran pests. In: 27th International Congress of Entomology : Kyoto, Japan, 25-30 Augist 2024 : entomology for our planet : {book of abstracts]. Kyoto: [s. n.], 2024. Str. 1. https://confit.atlas.jp/guide/event/ice2024/subject/15-3-13/advanced. [COBISS.SI-ID 206946307]

176. PETEK, Marko, LUKAN, Tjaša, MARONDINI, Nastja, POGAČAR, Karmen, STARE, Katja, ŠUŠTAR, Klara, VOZELJ, Anže, DOLNIČAR, Peter, GRUDEN, Kristina. Microbiome profiling of potato roots and leaves grown under organic vsintegrated pest management. In: Exploiting plant-microbiomes networks and synthetic communities to improve crops fitness : 1 st Annual Conference of the MiCropBiomes COST Action : Faculty of Sciences of the University of Porto, 11 to 12 September 2024. Porto: [s. n.], 2024. Str. 41. [COBISS.SI-ID 212335619]
project: J4-3089; funder: Slovenian Research and Innovation Agency (ARIS)
project: P4-0165; funder: Slovenian Research and Innovation Agency (ARIS)
project: P4-0431.; funder: Slovenian Research and Innovation Agency (ARIS)

177. ZRIMEC, Jan, CORREO, Sandra, ZAGORŠČAK, Maja, BLEKER, Carissa, PETEK, Marko, STARE, Katja, GRUDEN, Kristina, NIKOLOSKI, Zoran. Modelling potato primary and secondary metabolism captures the principles of plant growth and defence under biotic stress. In: Plant modeling: opportunities and challenges : IJPB Symposium 2024 : Versailles, France, 13-15 May 2024 : abstract book. Plant modeling: opportunities and challenges, IJPB Symposium 2024, Versailles, France, 13-15 May 2024. [S. l.: s. n., 2024]. Str. [37]. https://ijpb-plant-sciences.symposium.inrae.fr/program. [COBISS.SI-ID 196557315]

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180. PŠENIČNIK, Alen, SLEMC, Lucija, AVBELJ, Martina, TOME, Miha, ŠALA, Martin, HERRON, Paul R., SHMATKOV, Maksym, PETEK, Marko, BAEBLER, Špela, MRAK, Peter, HRANUELI, Daslav, STARČEVIĆ, Antonio, HUNTER, Iain S., PETKOVIĆ, Hrvoje. Nov pristop za izboljšanje produkcije antibiotika oksitetraciklina s tarčno redukcijo genoma bakterije Streptomyces rimosus. In: KUŠAR, Darja (ed.), JAMNIKAR CIGLENEČKI, Urška (ed.). 9. kongres Slovenskega mikrobiološkega društva : knjiga povzetkov : 14.–16. februar 2024. Ljubljana: Slovensko mikrobiološko društvo, 2024. Str. 41. ISBN 978-961-96562-0-4. https://smd2024.si/wp-content/uploads/2024/02/2024-02-12-knjiga-povzetkov-SMD_Compress.pdf. [COBISS.SI-ID 186106115]

181. VIDAK, Marko, KVERH, Bojan, FERK, Polonca, LESKOŠEK, Branimir, ZAGORŠČAK, Maja, NOLTE, Nadja Franziska, BLEKER, Carissa, PETEK, Marko, ŽUPANIČ, Anže. Orodja za delo z delotoki. Ljubljana: Centralna tehniška knjižnica, 2024. 1 spletni vir (1 datoteka PDF ([50] str.), 1 datoteka PPT ([50] str.)). Projekt Spoznaj. https://dirros.openscience.si/IzpisGradiva.php?id=21675&lang=slv, DiRROS - Digital repository of Slovenian research organizations. [COBISS.SI-ID 228635651]

182. PŠENIČNIK, Alen, SLEMC, Lucija, AVBELJ, Martina, TOME, Miha, ŠALA, Martin, HERRON, Paul R., SHMATKOV, Maksym, PETEK, Marko, BAEBLER, Špela, MRAK, Peter, HRANUELI, Daslav, STARČEVIĆ, Antonio, HUNTER, Iain S., PETKOVIĆ, Hrvoje. Oxytetracycline hyper-production through targeted genome reduction of Streptomyces rimosus. mSystems. May 2024, vol. 9, iss.5, str. 1-30, ilustr. ISSN 2379-5077. https://journals.asm.org/doi/10.1128/msystems.00250-24, DiRROS - Digital repository of Slovenian research organizations, Repository of the University of Ljubljana – RUL , DOI: 10.1128/msystems.00250-24. [COBISS.SI-ID 191381251]

183. PETEK, Marko, ZAGORŠČAK, Maja, BLEJEC, Andrej. pISA-tree : sistem za organizacijo projektnih raziskovalnih podatkov. Ljubljana: Centralna tehniška knjižnica, 2024. 1 spletni vir (1 datoteka PDF ([27] str.). Projekt Spoznaj. DiRROS - Digital repository of Slovenian research organizations. [COBISS.SI-ID 236228099]

184. PETEK, Marko, ZAGORŠČAK, Maja. pISA-tree-assay-types. Ljubljana: Nacionalni inštitut za biologijo; San Francisco: GitHub, Inc., 2024. 1 spletni vir. https://github.com/NIB-SI/pISA-tree-assay-types. [COBISS.SI-ID 303724291]

185. PETEK, Marko, JUTERŠEK, Mojca, VACAS GONZALEZ, S. Planococcus citri mealybug virgin and mated female transcriptome sequencing. Bethesda: NCBI, Feb. 2024. 1 spletni vir. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE179660. [COBISS.SI-ID 273702659]

186. VOZELJ, Anže, GODEC, Tim, POGAČAR, Karmen, PETEK, Marko, LUKAN, Tjaša, COLL RIUS, Anna, GRUDEN, Kristina. Potential of Fusarium oxysporum for studying complex interactions between plants and microbes. In: miCROPe, Microbe-assisted crop production 2024 : opportunities, challenges & needs : July, 15 – 18, 2024, Schloss Schönbrunn, Orangerie, Vienna, Austria. miCROPe, International Symposium Microbe-Assisted Crop Production – Opportunities, Challenges & Needs, July, 15 – 18, 2024, Schloss Schönbrunn, Orangerie, Vienna, Austria. [Vienna: Austrian Association of Molecular Life Sciences and Biotechnology (ÖGMBT), 2024]. Str. 198. https://www.micrope.org/getfile.php?file=MP24_Abstract_book_FINAL.pdf. [COBISS.SI-ID 203785475]

187. ZAGORŠČAK, Maja, BLEKER, Carissa, ZRIMEC, Jan, PETEK, Marko, ŽUPANIČ, Anže. Predstavitev programskih orodij Python in R. Ljubljana: Centralna tehniška knjižnica, 2024. 1 spletni vir (1 datoteka PPT ([25] str.), 1 datoteka PDF ([25] str.)). Projekt Spoznaj. DiRROS - Digital repository of Slovenian research organizations. [COBISS.SI-ID 236226819]

188. ZAGORŠČAK, Maja, BLEKER, Carissa, ZRIMEC, Jan, PETEK, Marko, ŽUPANIČ, Anže. Predstavitev programskih orodij Python in R. Ljubljana: Arnes, 2024. 1 spletni vir (1 videodatoteka (49 min, 40 sek)), barve, zvok. Projekt Spoznaj. https://video.arnes.si/en/watch/wxfqkn2bcp3x. [COBISS.SI-ID 229883907]

189. ŽIGON, Primož, GRUNDER, Maja, PANEVSKA, Anastasija, COLL RIUS, Anna, LUKAN, Tjaša, POGAČAR, Karmen, PETEK, Marko, RAZINGER, Jaka, GRUDEN, Kristina, SEPČIĆ, Kristina. Preizkušanje transgenih linij krompirja sorte Désirée za odpornost proti koloradskemu hrošču (Leptinotarsa decemlineata [Say]) = Testing transgenic Désirée potato lines for resistance to the Colorado potato beetle (Leptinotarsa decemlineata [Say]). In: TRDAN, Stanislav (ed.). Zbornik predavanj in referatov 16. slovenskega posvetovanja o varstvu rastlin z mednarodno udeležbo : Bohinjska Bistrica, 5.-6. marec 2024 = Lectures and papers presented at the 16th Slovenian Conference on Plant Protection with International Participation : Bohinjska Bistrica, March 5-6 2024. Ljubljana: Društvo za varstvo rastlin Slovenije: = Plant Protection Society of Slovenia, 2024. Str. 21-26. ISBN 978-961-96561-1-2. https://dvrs.si/zborniki-celotni/. [COBISS.SI-ID 210175747]

190. POGAČAR, Karmen, GRUNDNER, Maja, ŽIGON, Primož, COLL RIUS, Anna, PANEVSKA, Anastasija, LUKAN, Tjaša, PETEK, Marko, RAZINGER, Jaka, GRUDEN, Kristina, SEPČIĆ, Kristina. Protein complexes from edible mushrooms as a sustainable potato protection against coleopteran pests. Plant biotechnology journal. 2024, vol. 22, iss. 9, str. 2518-2529, ilustr. ISSN 1467-7644. https://onlinelibrary.wiley.com/doi/10.1111/pbi.14365, DiRROS - Digital repository of Slovenian research organizations, DOI: 10.1111/pbi.14365. [COBISS.SI-ID 195129603]
award: Priznanje ARIS - Odlični v znanosti 2025 s področja biotehnike

191. LUKAN, Tjaša, POGAČAR, Karmen, KRAIGHER, Barbara, STARE, Katja, GRUBAR, Teja, ZAGORŠČAK, Maja, PETEK, Marko, MANDIĆ-MULEC, Ines, GRUDEN, Kristina. PTI5 vzdržuje optimalno število bakterij Bacillus subtilis v koloniziranih rastlinah krompirja. In: KUŠAR, Darja (ed.), JAMNIKAR CIGLENEČKI, Urška (ed.). 9. kongres Slovenskega mikrobiološkega društva : knjiga povzetkov : 14.–16. februar 2024. Ljubljana: Slovensko mikrobiološko društvo, 2024. Str. 20. ISBN 978-961-96562-0-4. https://smd2024.si/wp-content/uploads/2024/02/2024-02-12-knjiga-povzetkov-SMD_Compress.pdf. [COBISS.SI-ID 186440707]

192. MANDIĆ-MULEC, Ines, ŠTEFANIČ, Polonca, BELCIJAN PANDUR, Katarina, KRAIGHER, Barbara, LUKAN, Tjaša, POGAČAR, Karmen, ŠIMUNOVIĆ, Katarina, BLAZNIK, Mojca, PODNAR, Eli, DANEVČIČ, Tjaša, DOGŠA, Iztok, DRAGOŠ, Anna, SMOLE MOŽINA, Sonja, KLANČNIK, Anja, STARE, Katja, GRUBAR, Teja, ZAGORŠČAK, Maja, PETEK, Marko, GRUDEN, Kristina. Social strategies of beneficial bacteria Bacillus subtilis. In: DIMKIĆ, Ivica (ed.). From Biotechnology to Human and Planetary Health : XIII Congress of Microbiologists of Serbia - Mikromed regio 5 : Mona Plaza Hotel Belgrade, Serbia - 4th-6th of April, 2024 : book of abstracts. Belgrade: Serbian Society for Microbiology, 2024. Str. 59, il40. https://ums.rs/abstract_books/Congress_UMS_24_series_2024.pdf. [COBISS.SI-ID 194552579]

193. COLL RIUS, Anna, LUKAN, Tjaša, STARE, Katja, ZAGORŠČAK, Maja, MAHKOVEC POVALEJ, Tjaša, BAEBLER, Špela, PRAT, Salomé, SÁNCHEZ COLL, Núria, VALLS, Marc, PETEK, Marko, GRUDEN, Kristina. Solanum tuberosum cultivar Rywal ETHYLENE INSENSITIVE 3-like 2 (EIL2) mRNA, complete cds. Bethesda: National Library of Medicine, 2024. 1 spletni vir. https://www.ncbi.nlm.nih.gov/nuccore/OR736062.1/. [COBISS.SI-ID 274366467]

194. COLL RIUS, Anna, LUKAN, Tjaša, STARE, Katja, ZAGORŠČAK, Maja, MAHKOVEC POVALEJ, Tjaša, BAEBLER, Špela, PRAT, Salomé, SÁNCHEZ COLL, Núria, VALLS, Marc, PETEK, Marko, GRUDEN, Kristina. Solanum tuberosum cultivar Rywal NAC domain containing protein 55 (ANAC55) mRNA, complete cds. Bethesda: National Library of Medicine, 2024. 1 spletni vir. https://www.ncbi.nlm.nih.gov/nuccore/OR736059.1/. [COBISS.SI-ID 274364675]

195. COLL RIUS, Anna, LUKAN, Tjaša, STARE, Katja, ZAGORŠČAK, Maja, MAHKOVEC POVALEJ, Tjaša, BAEBLER, Špela, PRAT, Salomé, SÁNCHEZ COLL, Núria, VALLS, Marc, PETEK, Marko, GRUDEN, Kristina. The StPti5 ethylene response factor acts as a susceptibility factor by negatively regulating the potato immune responseto pathogens. The new phytologist. 2024, vol. 244, iss. 1, str. 202-218, ilustr. ISSN 1469-8137. https://nph.onlinelibrary.wiley.com/doi/10.1111/nph.20004, DiRROS - Digital repository of Slovenian research organizations, DOI: 10.1111/nph.20004. [COBISS.SI-ID 205111043]

196. BLEKER, Carissa, RAMŠAK, Živa, BITTNER, Andras, PODPEČAN, Vid, ZAGORŠČAK, Maja, WURZINGER, Bernhard, BAEBLER, Špela, PETEK, Marko, KRIŽNIK, Maja, VAN DIEREN, Annelotte, GRUBER, Juliane, AFJEHI-SADAT, Leila, WECKWERTH, Wolfram, ŽUPANIČ, Anže, TEIGE, Markus, VOTHKNECHT, Ute C., GRUDEN, Kristina, et al. Stress knowledge map : a knowledge graph resource for systems biology analysis of plant stress responses. Plant communications. 10 Jun. 2024, iss. 6, [art. no.] 100920, str. 1-15, ilustr. ISSN 2590-3462. https://doi.org/10.1016/j.xplc.2024.100920, https://skm.nib.si, DiRROS - Digital repository of Slovenian research organizations, DOI: 10.1016/j.xplc.2024.100920. [COBISS.SI-ID 198383363]

197. JUTERŠEK, Mojca, GERASYMENKO, Iryna, PETEK, Marko, HAUMANN, Elisabeth, VACAS, Sandra, KALLAM, Kalyani, GIANOGLIO, Silvia, NAVARRO-LLOPIS, Vicente, HEETHOFF, Michael, NAVARRO FUERTES, Ismael, PATRON, Nicola, ORZAEZ, Diego, GRUDEN, Kristina, WARZECHA, Heribert, BAEBLER, Špela. Transcriptome-informed identification and characterization of Planococcus citri cis- and trans-isoprenyl diphosphate synthase genes. iScience. [Online ed.]. Apr. 2024, iss. 4, [art. no.] 109441, str. 1-18, ilustr. ISSN 2589-0042. https://doi.org/10.1016/j.isci.2024.109441, DiRROS - Digital repository of Slovenian research organizations, DOI: 10.1016/j.isci.2024.109441. [COBISS.SI-ID 189713411]

198. ZAGORŠČAK, Maja, ZRIMEC, Jan, BLEKER, Carissa, NOLTE, Nadja Franziska, JUTERŠEK, Mojca, RAMŠAK, Živa, GRUDEN, Kristina, PETEK, Marko. UniTato : the Unified PoTato Genome Annotation Database. [Ljubljana]: National Institute of Biology, 2024. 1 spletni vir. https://unitato.nib.si/. [COBISS.SI-ID 272906755]

199. PETEK, Marko, BLEKER, Carissa, GODEC, Tim, KRIŽNIK, Maja, ZAGORŠČAK, Maja, ZRIMEC, Jan, ŽUPANIČ, Anže, GRUDEN, Kristina. Unravelling potato abiotic stress responses using omics technologies. In: KRANJC BREZAR, Simona (ed.), ČEMAŽAR, Maja (ed.), MARKELC, Boštjan (ed.). 10th Congress of the Genetic Society of Slovenia & 10th meeting of the Slovenian Society for Human Genetics : book of abstracts : September 25th-28th 2024, Faculty of Tourism Studies - Turistica, Portorož, Slovenia]. 1st ed. Ljubljana: Genetic Society of Slovenia: Slovenian Society of Human Genetics, 2024. Str. 80. ISBN 978-961-93545-9-9. https://genetika24.sgd.si/wp-content/uploads/2024/09/Gen24_Book_of_Abstracts_Web.pdf. [COBISS.SI-ID 211370499]

200. PODNAR, Eli, DANEVČIČ, Tjaša, LORIES, Bram, PETEK, Marko, BAEBLER, Špela, FIŠER, Sara, GRUDEN, Kristina, STEENACKERS, Hans, MANDIĆ-MULEC, Ines. Bacillus subtilis ensures high spore quality in competition with Salmonella Typhimurium via the SigB-dependent pathway. In: Bacell 2025 : Amsterdam 17-18 June : Abstract book. [Amsterdam: University of Amsterdam], 2025. Str. 12, t7. https://bacell2025.eu/programme, https://www.abstract book Bacell 2025.pdf. [COBISS.SI-ID 246764291]

201. MANDIĆ-MULEC, Ines, PODNAR, Eli, DANEVČIČ, Tjaša, KRAIGHER, Barbara, LORIES, Bram, PETEK, Marko, BAEBLER, Špela, STEENACKERS, Hans, GRUDEN, Kristina. Bacillus subtilis ensures high spore quality in competition with Salmonella Typhimurium via the SigB-dependent pathway. In: FEMS Micro : Milan, 14-17 July 2025 : congress, exhibition : abstract book. [Milan: Federation of European Microbiological Societies, 2025]. Str. 285. https://static1.squarespace.com/static/65f1f4c283c47475e7fc202f/t/68baaf408efa9c3c58b4c3ba/1757065024875/Abstract%2BBook.pd. [COBISS.SI-ID 248187395]

202. JUTERŠEK, Mojca, PETEK, Marko, BAEBLER, Špela. Combining short- and long-read transcriptomes for targeted enzyme discovery. In: RAGHAVACHARI, Nalini (ed.), GARCIA-REYERO, Natàlia (ed.). Gene expression analysis : methods and protocols. 2nd ed. New York: Humana Press, cop. 2025. Str. 69-99, ilustr. Methods in molecular biology, 2990. ISBN 978-1-0716-4275-7, ISBN 978-1-0716-4276-4. ISSN 1064-3745, ISSN 1940-6029. https://link.springer.com/protocol/10.1007/978-1-0716-4276-4_4, DiRROS - Digital repository of Slovenian research organizations, DOI: 10.1007/978-1-0716-4276-4_4. [COBISS.SI-ID 231281411]

203. PETEK, Marko, ZAGORŠČAK, Maja. Complete dry-lab workflow for an ERF transcription factor StPti5, a novel regulator of endophyte community maintenance in potato : version 1.0.0. Genève: Zenodo, 2025. 1 spletni vir. https://doi.org/10.5281/zenodo.17728235, https://github.com/NIB-SI/Bacillus-Pti5, DOI: 10.5281/zenodo.17728235. [COBISS.SI-ID 303685123]

204. GODEC, Tim, PETEK, Marko, BLEKER, Carissa, KRIŽNIK, Maja, ZAGORŠČAK, Maja, ZRIMEC, Jan, PANZAROVA, Klara, ABDELHAKIM, Lamis, ŽUPANIČ, Anže, GRUDEN, Kristina. Decoding potato responses to climate stress through integrative omics. In: SolanaceaeRubiaceae conference 2025 : abstract book. [S. l.: s. n.], 2025. Str. 88. https://solrub2025.org/wp-content/uploads/2025/09/ABSTRACT-BOOK-SOLRUB2025-24_09.pdf. [COBISS.SI-ID 253981955]

205. VOZELJ, Anže, POGAČAR, Karmen, GODEC, Tim, PETEK, Marko, LUKAN, Tjaša, IRIONDO OCAMPO, Paula, DÍAZ-MÍNGUEZ, José María, GRUDEN, Kristina. Developing a monitoring framework for Fusarium oxysporum–plant interactions and characterizing an endophytic F. oxysporum isolate to understand complex plant-microbe relationships. In: 2nd Annual Conference of the MiCropBiomes COST Action : exploiting plant-microbiomes networks and synthetic communities to improve crops fitness. [S. l.: s. n., 2025]. Str. 66. https://micropbiomes.eu/wp-content/uploads/2025/09/MiCropBiomes_2nd-Annual-Conference-Abstract-Book.pdf. [COBISS.SI-ID 255354115]

206. PETEK, Marko, POGAČAR, Karmen, GRUNDNER, Maja, ŽIGON, Primož, COLL RIUS, Anna, PANEVSKA, Anastasija, LUKAN, Tjaša, RAZINGER, Jaka, GRUDEN, Kristina, SEPČIĆ, Kristina. Engineering potato resistance to Colorado potato beetle by expressing lipid-targeting protein complexes from edible mushrooms. In: SolanaceaeRubiaceae conference 2025 : abstract book. [S. l.: s. n.], 2025. Str. 79. https://solrub2025.org/wp-content/uploads/2025/09/ABSTRACT-BOOK-SOLRUB2025-24_09.pdf. [COBISS.SI-ID 253980419]

207. LUKAN, Tjaša, KRAIGHER, Barbara, POGAČAR, Karmen, STARE, Katja, GRUBAR, Teja, ZAGORŠČAK, Maja, PETEK, Marko, ŠTEFANIČ, Polonca, VOZELJ, Anže, LEVAK, Valentina, MAHKOVEC POVALEJ, Tjaša, MANDIĆ-MULEC, Ines, GRUDEN, Kristina, et al. An ERF transcription factor StPTI5, a novel regulator of endophyte community maintenance in potato. bioRxiv : the preprint server for biology. 24. Apr. 2025, str. 1-38, ilustr. ISSN 2692-8205. https://www.biorxiv.org/content/10.1101/2025.04.24.650297v1, DOI: 10.1101/2025.04.24.650297. [COBISS.SI-ID 238485251]

208. PETEK, Marko. Establishing aegerolysin protein complex expression in soybean pest protection : NIB dan 2025, 5. dec. 2025, Ljubljana. https://www.nib.si/images/Program_NIBDAN2025_2.pdf. [COBISS.SI-ID 278310403]

209. LIDOY, Javier, RIVERO, Javier, RAMŠAK, Živa, PETEK, Marko, KRIŽNIK, Maja, FLORS, Victor, LOPEZ-RAEZ, Juan A, MARTINEZ-MEDINA, Ainhoa, GRUDEN, Kristina, POZO, Maria J. Ethylene signaling is essential for mycorrhiza-induced resistance against chewing herbivores in tomato. Journal of experimental botany. 2025, vol. , iss. , str. 1-17, ilustr. ISSN 1460-2431. https://academic.oup.com/jxb/advance-article/doi/10.1093/jxb/eraf053/8005847, DiRROS - Digital repository of Slovenian research organizations, DOI: 10.1093/jxb/eraf053. [COBISS.SI-ID 229389315]

210. ZRIMEC, Jan, CORREO, Sandra, ZAGORŠČAK, Maja, PETEK, Marko, BLEKER, Carissa, STARE, Katja, SCHUY, Christian, SONNEWALD, Sophia, GRUDEN, Kristina, NIKOLOSKI, Zoran. Evaluating plant growth–defense trade-offs by modelingthe interaction between primary and secondary metabolism. Proceedings of the National Academy of Sciences of the United States of America. [Online ed.]. Aug. 2025, vol. 122, no. 32, [article no.] e2502160122, str. 1-11, ilustr. ISSN 1091-6490. https://www.pnas.org/doi/10.1073/pnas.2502160122, DiRROS - Digital repository of Slovenian research organizations, DOI: 10.1073/pnas.2502160122. [COBISS.SI-ID 246042883]

211. ŽIGON, Primož, GRUNDER, Maja, PANEVSKA, Anastasija, COLL RIUS, Anna, LUKAN, Tjaša, POGAČAR, Karmen, PETEK, Marko, RAZINGER, Jaka, GRUDEN, Kristina, SEPČIĆ, Kristina. Gensko spremenjene rastline krompirja, ki izražajo proteinske komplekse iz gliv rodu Pleurotus: Nova strategija zatiranja koloradskega hrošča = Genetically modified potato plants expressing protein complexes from fungal genus Pleurotus: A novel strategy for Colorado Potato Beetle Control. In: ČEH, Barbara (ed.), et al. Novi izzivi v agronomiji 2025 = New Challenges in Agronomy 2025 : program simpozija in povzetki prispevkov = symposium program and summaries : [Laško, 30. in 31. januar 2025]. Ljubljana: Slovensko agronomsko društvo: = Slovenian Society of Agronomy, 2025. Str. 80-81, ilustr. ISBN 978-961-94613-4-1. [COBISS.SI-ID 225530371]

212. BREZNIK VITTORI, Barbara, CONWAY, Gillian E., NOVAK, Metka, VAN MALDEGEM, Febe, ŠTAMPAR, Martina, ŠTERN, Alja, TIKLOVA, Katarina, YOKOTA, Chika, ŽEGURA, Bojana (author, project manager), IPAVEC, Vesna Mia, KRANJC, Luka, PETEK, Marko, ŽUPANIČ, Anže. A guideline protocol for big data management (M28) : deliverable D5.2. [S. l.: s. n.], 2025. 1 spletni vir (1 datoteka PDF ([29] str.)), ilustr. https://ec.europa.eu/research/participants/documents/downloadPublic?documentIds=080166e51bd19c6c&appId=PPGMS. [COBISS.SI-ID 285228035]

213. GODEC, Tim, BEIER, Sebastian, RODRIGUEZ-GRANADOS, Natalia Yaneth, SASIDHARAN, Rashmi, ABDELHAKIM, Lamis, TEIGE, Markus, USADEL, Björn, GRUDEN, Kristina, PETEK, Marko. Haplotype-resolved genome assembly of the tetraploid potato cultivar Désirée. Scientific data. 2025, iss. 1, [art. no.] 1044, str. 1-8, ilustr. ISSN 2052-4463. https://doi.org/10.1038/s41597-025-05372-3, DiRROS - Digital repository of Slovenian research organizations, DOI: 10.1038/s41597-025-05372-3. [COBISS.SI-ID 223886083]

214. BLEKER, Carissa, RAMŠAK, Živa, BITTNER, Andras, PODPEČAN, Vid, ZAGORŠČAK, Maja, WURZINGER, Bernhard, BAEBLER, Špela, PETEK, Marko, KRIŽNIK, Maja, ŽUPANIČ, Anže, GRUDEN, Kristina, et al. Knowledge graphs - blurring the lines between networks and models in the search for resilient potato. In: PAG 32. Plant and Animal Genome Conference, PAG 32, January 10-15, 2025, San Diego, USA. Surfside: Scherago International, 2025. [1] str. https://plan.core-apps.com/pag32/abstract/2be0b4a0-e917-478d-8298-9060f4d8c5a2. [COBISS.SI-ID 225383171]

215. PODNAR, Eli, ŠIMUNOVIĆ, Katarina, DANEVČIČ, Tjaša, ŠTEFANIČ, Polonca, LORIES, Bram, PETEK, Marko, BAEBLER, Špela, FIŠER, Sara, REZAR, Vida, LIPOGLAVŠEK, Luka, FANEDL, Lijana, PIRMAN, Tatjana, AVGUŠTIN, Gorazd, SALOBIR, Janez, ZORMAN-ROJS, Olga, GRUDEN, Kristina, STEENACKERS, Hans, MANDIĆ-MULEC, Ines, et al. Molecular cues shaping ecological adaptations during pathogen-probiotic interactions. In: Bageco 2025 : 17th Symposium on Bacterial Genetics and Ecology : 1-4 July, Graz, Austria : Bacteria drive our planet`s health : abstracts. Graz: Institute of Enviromental Biotechnology, Graz University of Technology, 2025. Str. [13], al004. https://bageco.org/programme-abstracts/abstract-submission, https://bageco.org/fileadmin/bageco/2025/BAGECO2025_Abstractbooklet.pdf. [COBISS.SI-ID 241632259]

216. VRABEC, Branko (interviewer), SEPČIĆ, Kristina, POGAČAR, Karmen, GRUDEN, Kristina, RAZINGER, Jaka, ŽIGON, Primož, PETEK, Marko. Naravni insekticidi iz gob. Ljubljana: Radiotelevizija Slovenija javni zavod, 2025. 1 spletni vir (1 videodatoteka (9 min, 56 sek)), barve, zvok. Ljudje in zemlja. https://365.rtvslo.si/arhiv/ljudje-in-zemlja/175115041. [COBISS.SI-ID 238829059]

217. NOLTE, Nadja Franziska, GRUDEN, Kristina, PETEK, Marko. NIB-SI/longrnaseq: v1.0.1 : version v1.0.1. Genève: Zenodo, 2025. 1 spletni vir. https://doi.org/10.5281/zenodo.17631222, https://github.com/NIB-SI/longrnaseq/commits/v1.0.1, DOI: 10.5281/zenodo.17631222. [COBISS.SI-ID 294242819]

218. NOLTE, Nadja Franziska, GRUDEN, Kristina, PETEK, Marko. NIB-SI/polyase: v1.0.0 : version v1.0.0. Genève: Zenodo, 2025. 1 spletni vir. https://doi.org/10.5281/zenodo.17631236, https://github.com/NIB-SI/polyase/tree/v1.0.0, DOI: 10.5281/zenodo.17631236. [COBISS.SI-ID 294254083]

219. NOLTE, Nadja Franziska, GRUDEN, Kristina, PETEK, Marko. NIB-SI/syntelogfinder: inital release : version v1.0.0. Genève: Zenodo, 2025. 1 spletni vir. https://doi.org/10.5281/zenodo.17627950, https://github.com/NIB-SI/syntelogfinder/commits/v1.0.0, DOI: 10.5281/zenodo.17627950. [COBISS.SI-ID 294250243]

220. GODEC, Tim, BEIER, Sebastian, RODRIGUEZ-GRANADOS, Natalia Yaneth, SASIDHARAN, Rashmi, ABDELHAKIM, Lamis, TEIGE, Markus, USADEL, Björn, GRUDEN, Kristina, PETEK, Marko. A phased genome resource for potato cultivar Désirée. In: KRANJC BREZAR, Simona (ed.), ČEMAŽAR, Maja (ed.), MARKELC, Boštjan (ed.). 10th Colloquium of Genetics : book of abstracts : September 19th 2025, National Institute of Biology, Marine Biology Station, Piran. Ljubljana: Genetic Society of Slovenia: Slovenian Society of Human Genetics, 2025. Str. 32-33. ISBN 978-961-97126-0-3. https://2025.sgd.si/wp-content/uploads/2025/09/SGD_Zbornik_2025_Kolokvij.pdf. [COBISS.SI-ID 249676803]

221. NOLTE, Nadja Franziska, GRUDEN, Kristina, MCINTYRE, Lauren, PETEK, Marko. A pipeline for allele specific expression analysis in polyploid plants using long-read RNA-seq. In: ISMB/ECCB 2025 : book of abstracts : the 33rd Conference on Intelligent Systems for Molecular Biology and the 24th European Conference on Computational Biology. [S. l.: s. n., 2025]. Str. 815. https://www.iscb.org/images/stories/ismbeccb2025/document.AbstractsBook.ISMBECCB.2025.pdf. [COBISS.SI-ID 251159811]

222. PETEK, Marko, ZAGORŠČAK, Maja, BLEJEC, Andrej. pISA-tree : sistem za organizacijo projektnih raziskovalnih podatkov. Ljubljana: Arnes, 2025. 1 spletni vir (1 videodatoteka (42 min, 22 sek)), barve, zvok. Projekt Spoznaj. https://video-prod.arnes.si/watch/spx7w3bcwxwp. [COBISS.SI-ID 229890563]

223. GRUDEN, Kristina (interviewee), PETEK, Marko (interviewee), POGAČAR, Karmen (interviewee). Razvoj bioinsekticidnega delovanja proteinov : prispevek v oddaji Ljudje in zemlja, RTV Slovenija, 9. 3. 2025. [COBISS.SI-ID 229090563]

224. BLEKER, Carissa, RAMŠAK, Živa, PODPEČAN, Vid, ZAGORŠČAK, Maja, BAEBLER, Špela, PETEK, Marko, KRIŽNIK, Maja, ŽUPANIČ, Anže, GRUDEN, Kristina. Stress knowledge map: harnessing knowledge graphs for integrative analysis of plant stress responses. In: PAG 32. Plant and Animal Genome Conference, PAG 32, January 10-15, 2025, San Diego, USA. Surfside: Scherago International, 2025. [1] str. https://plan.core-apps.com/pag32/abstract/11d52799fbee2e951df7857ea4877ee5. [COBISS.SI-ID 225383683]

225. HEUERMANN, Marc C., BARROS, Pedro Miguel, BEIER, Sebastian, GODEC, Tim, GRUDEN, Kristina, NOLTE, Nadja Franziska, PETEK, Marko, ZAGORŠČAK, Maja, et al. White paper: standards for handling and analyzing plant pan-genomes. F1000Research. 2025, vol. 14, [article no.] 739, str. 1-10, ilustr. ISSN 2046-1402. https://doi.org/10.12688/f1000research.166538.2, DiRROS - Digital repository of Slovenian research organizations, DOI: 10.12688/f1000research.166538.2. [COBISS.SI-ID 267262979]

226. ARNŠEK, Tina, VOZELJ, Anže, POGAČAR, Karmen, STRAŽAR, Martin, PETEK, Marko, MANDIĆ-MULEC, Ines, GRUDEN, Kristina. Assembly of microbial collection, isolated from potato field samples. In: 3rd Annual Conference of the MiCropBiomes COST Action : Belgrade, 3-5 June 2026. [S. l.: s. n., 2026]. Str. 74. https://micropbiomes.eu/3rd-annual-conference-on-plant-microbiomes-in-belgrade-serbia-from-3-to-5-june-2026. [COBISS.SI-ID 282123779]

227. MANDIĆ-MULEC, Ines, LUKAN, Tjaša, POGAČAR, Karmen, KRAIGHER, Barbara, STARE, Katja, GRUBAR KOVAČIČ, Teja, ZAGORŠČAK, Maja, PETEK, Marko, ŠTEFANIČ, Polonca, VOZELJ, Anže, LEVAK, Valentina, MAHKOVEC POVALEJ, Tjaša, KRIŽNIK, Maja, BAEBLER, Špela, GRUDEN, Kristina, et al. Bacillus subtilis social interactions shape plant immunity and colonization dynamics. In: Bacell 2026 : Abstract book : Málaga, June 8-9, 2026. [Málaga: University of Málaga], 2026. Str. 40. https://bacell2026.eu/abstract-book/. [COBISS.SI-ID 285823747]

228. STRAŽAR, Martin, POGAČAR, Karmen, VOZELJ, Anže, ARNŠEK, Tina, ŠUŠTAR, Klara, PETEK, Marko, DOLNIČAR, Peter, ŠTEFANIČ, Polonca, MANDIĆ-MULEC, Ines, GRUDEN, Kristina. Characterisation of potato microbiota for design of successful potatobiome communities. In: 3rd Annual Conference of the MiCropBiomes COST Action : Belgrade, 3-5 June 2026. [S. l.: s. n., 2026]. Str. 36. https://micropbiomes.eu/3rd-annual-conference-on-plant-microbiomes-in-belgrade-serbia-from-3-to-5-june-2026. [COBISS.SI-ID 282118659]

229. ZAGORŠČAK, Maja, PETEK, Marko, KUNAVER, Uroš, DURINI, Petra, HLADNIK, Jože. Delavnica izdelave NRRP : naravoslovje in tehnika. Ljubljana in online: Centralna tehniška knjižnica, 2026. 1 spletni vir (1 datoteka PDF ([89] str.), 1 datoteka PPT ([89] str.)), ilustr. https://dirros.openscience.si/IzpisGradiva.php?id=29715&lang=slv, DiRROS - Digital repository of Slovenian research organizations. [COBISS.SI-ID 280193027]

230. LUKAN, Tjaša, POGAČAR, Karmen, KRAIGHER, Barbara, STARE, Katja, GRUBAR KOVAČIČ, Teja, ZAGORŠČAK, Maja, PETEK, Marko, ŠTEFANIČ, Polonca, VOZELJ, Anže, LEVAK, Valentina, MAHKOVEC POVALEJ, Tjaša, KRIŽNIK, Maja, BAEBLER, Špela, MANDIĆ-MULEC, Ines, GRUDEN, Kristina, et al. ERF transcription factor StPti5 is a regulator of endophyte community maintenance in potato. The New phytologist. Aug. 2026, vol. 251, issue 3, str. 1344-1360, ilustr. ISSN 0028-646X. https://nph.onlinelibrary.wiley.com/doi/epdf/10.1111/nph.71240, DOI: 10.1111/nph.71240. [COBISS.SI-ID 280103171]

231. VOZELJ, Anže, GODEC, Tim, POGAČAR, Karmen, IRIONDO OCAMPO, Paula, PETEK, Marko, LUKAN, Tjaša, DÍAZ-MÍNGUEZ, José María, GRUDEN, Kristina. Genomic and biological characterization of a novel potato endophytic Fusarium oxysporum isolate with disease -suppressive activity. In: IAPB 2026 : Saskatoon, Canada, July 26-30, 2026 : proceedings booklet. IAPB 2026, 16th International Association for Plant Biotechnology Congress, Saskatoon, Canada, July 26-30, 2026. [S. l.: s. n., 2026]. Str. 52. [COBISS.SI-ID 287711491]

232. ATAK, Eylem, TAVČAR VERDEV, Petra, PETEK, Marko, COLL RIUS, Anna, BOSCH, Daniel, DOLINAR, Marko, KOMARYSTA, Viktoriia, GLAVAŠ, Neli, ROTTER, Ana. Identification and cultivation of biotechnologically relevant microalgal and cyanobacterial species isolated from Sečovlje salt pans, Slovenia. Marine drugs. 2026, vol. 24, no. 1, [article no.] 26, str. 1-28, ilustr. ISSN 1660-3397. https://www.mdpi.com/1660-3397/24/1/26, DiRROS - Digital repository of Slovenian research organizations, DOI: 10.3390/md24010026. [COBISS.SI-ID 264147203]

233. ZRIMEC, Jan, CORREO, Sandra, ZAGORŠČAK, Maja, BLEKER, Carissa, PETEK, Marko, STARE, Katja, GRUDEN, Kristina, NIKOLOSKI, Zoran. Investigating the principles of plant growth-defence trade-offs and biotic interactions using metabolic modelling. In: ECCB 2026, 25th European Conference on Computational Biology : Geneva, Switzerland, 31 August - 4 September 2026. ECCB 2026, 25th European Conference on Computational Biology, Geneva, Switzerland, 31 August - 4 September 2026. Geneva: SIB, Swiss Institute of Bioinformatics. 2026, [1] str. https://eccb2026.org/elixir. [COBISS.SI-ID 290987779]

234. ZRIMEC, Jan, CORREA, Sandra, ZAGORŠČAK, Maja, BLEKER, Carissa, PETEK, Marko, STARE, Katja, GRUDEN, Kristina, NIKOLOSKI, Zoran. Investigating the principles of plant growth-defence trade-offs in biotic interactions using metabolic modelling. In: ISGSB2026 : The 22nd Conference on International Study Group for Systems Biology, 7 Sep–11 Sep 2026, Ljubljana. [S. l.: s. n.]. 2026, [1] str. https://submit.academicevent.net/isgsb2026/portal/M7GH24ob41XdY5nsJZiC67ZNbj1Bdw64LQySvEmzWkvDRxywQkJqEd0KsZF9bLXt/programme, https://isgsb.nib.si/wp-content/uploads/2026/10/ISGSB2026_BoA.pdf. [COBISS.SI-ID 294318595]

235. ZRIMEC, Jan, BLEKER, Carissa, PETEK, Marko, GRUDEN, Kristina. Investigating the principles of potato growth- defence trade-offs and biotic interactions using metabolic modelling : 12th ELIXIR All Hands meeting, 8-10 June 2026, Lyon, France. [COBISS.SI-ID 282288899]

236. MANDIĆ-MULEC, Ines, ŠIMUNOVIĆ, Katarina, PODNAR, Eli, KRAČMAN, Filip, DANEVČIČ, Tjaša, ŠTEFANIČ, Polonca, KRAIGHER, Barbara, LIPOGLAVŠEK, Luka, FANEDL, Lijana, AVGUŠTIN, Gorazd, KLANČNIK, Anja, JUG, Blaž, SMOLE MOŽINA, Sonja, REZAR, Vida, SALOBIR, Janez, PIRMAN, Tatjana, MICHELINI, Sara, DROBNE, Damjana, KONONENKO, Veno, PETEK, Marko, FIŠER, Sara, BAEBLER, Špela, GRUDEN, Kristina, LORIES, Bram, STEENACKERS, Hans. Lessons from microbial interactions for probiotic applications. In: DIMKIĆ, Ivica (ed.), KEKIĆ, Dušan (ed.). 1st South-East Transnational Congress of Microbial Sciences, June 10-13, 2026, Belgrade, Serbia : book of abstracts : MicroFusion, Big Impact – Microbiology, Health & Environment in Harmony : SETComs & Mikromed regio. Belgrade: University of Belgrade, Faculty of Biology, 2026. Str. 47. Collection of the Faculty of Biology (Online). ISBN 978-86-7078-201-3. ISSN 3009-3740. https://microbiology.bg.ac.rs/DOC/2026BookOfAbstract.pdf. [COBISS.SI-ID 286239747]

237. NOLTE, Nadja Franziska, GRUDEN, Kristina, PETEK, Marko. LongPolyASE: An end-to-end framework for allele-specific gene and isoform analysis in polyploids using long-read RNA-seq : version v2. Genève: Zenodo, 2026. 1 spletni vir. https://doi.org/10.5281/zenodo.20812985, DOI: 10.5281/zenodo.20812985. [COBISS.SI-ID 293609987]

238. NOLTE, Nadja Franziska, GRUDEN, Kristina, PETEK, Marko. LongPolyASE: an end-to-end framework for allele-specific gene and isoform analysis in polyploids using long-read RNA-seq. Plant methods. 21. Jul. 2026, str. 1-24, ilustr. ISSN 1746-4811. https://doi.org/10.1186/s13007-026-01569-8, DiRROS - Digital repository of Slovenian research organizations, DOI: 10.1186/s13007-026-01569-8. [COBISS.SI-ID 267622659]

239. VOZELJ, Anže, GODEC, Tim, IRIONDO OCAMPO, Paula, PETEK, Marko, LUKAN, Tjaša, DÍAZ-MÍNGUEZ, José María, GRUDEN, Kristina. A novel potato endophytic Fusarium oxysporum isolate with disease-suppressive activity: genomic and biological characterization. In: 3rd Annual Conference of the MiCropBiomes COST Action : Belgrade, 3-5 June 2026. [S. l.: s. n., 2026]. Str. 26. https://micropbiomes.eu/3rd-annual-conference-on-plant-microbiomes-in-belgrade-serbia-from-3-to-5-june-2026. [COBISS.SI-ID 282126083]

240. SEPČIĆ, Kristina, GRUNDNER, Maja, PANEVSKA, Anastasija, GRUDEN, Kristina, LUKAN, Tjaša, POGAČAR, Karmen, COLL RIUS, Anna, PETEK, Marko, RAZINGER, Jaka, ŽIGON, Primož. Plants producing proteins for pest control = Proteine zur Schädlingsbekämpfung produzierende Pflanzen = Plantes produisant des proteines pour la lutte contre les nuisibles : patent document 4 702 149 A1. München: European Patent Office, 2026. 33 str., 10 str. pril., ilustr. [COBISS.SI-ID 158298883]

241. VIŽINTIN, Angelika, ZAGORŠČAK, Maja, TURK, Eva, KRIŽNIK, Maja, PETEK, Marko, STARE, Katja, ZRIMEC, Jan, GRUDEN, Kristina, et al. Potato yield can be predicted by using drone-captured and environmental measurements early in the growing season. bioRxiv : the preprint server for biology. 11. Mar. 2026, str. 1-49, ilustr. ISSN 2692-8205. https://www.biorxiv.org/content/10.64898/2026.03.09.709817v1, DOI: 10.64898/2026.03.09.709817. [COBISS.SI-ID 272513795]

242. NOLTE, Nadja Franziska, PETEK, Marko, ANGULO LARA, Pablo, MULRONEY, Logan, NICASSIO, Francesco, MARRONI, Fabio, MCINTYRE, Lauren. The promise of long-read RNA-seq: reducing bias in analyses of allele imbalance. NAR genomics and bioinformatics. Avg. 2026, iss. 3, art. no. 71, str. [1]-10, ilustr. ISSN 2631-9268. https://doi.org/10.1093/nargab/lqag071, DiRROS - Digital repository of Slovenian research organizations, DOI: 10.1093/nargab/lqag071. [COBISS.SI-ID 291441155]

243. VOZELJ, Anže, GODEC, Tim, STARE, Katja, MAHKOVEC POVALEJ, Tjaša, IRIONDO OCAMPO, Paula, PETEK, Marko, DÍAZ-MÍNGUEZ, José María, LUKAN, Tjaša, GRUDEN, Kristina. Understanding harmful and beneficial plant interactions through the study of harmful Potato virus Y and beneficial endophytic Fusarium oxysporum isolate. In: MEZINEC URBANIJA, Ana (ed.), PONGRAC, Paula (ed.). Rethinking Plant Systems for the Future : international conference of the Slovenian Society of Plant Biology : Hotel Habakuk, September 17-18, 2026, Maribor, Slovenia. 1st electronic ed. Ljubljana: Slovenian Society of Plant Biology, 2026. Str. 16. ISBN 978-961-91014-6-9. https://www.plantslo.org/wp/wp-content/uploads/2026/09/Rethinking_Plant_Systems_for_the_Future_SDBR-2026.pdf. [COBISS.SI-ID 292657667]

Marko Petek

Personal bibliography for the period 2007-2026

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