Jens Nielsen

1. NIELSEN, Jens Høiriis. A simple morphologically structured model describing the growth of filamentous microorganisms. Biotechnology and bioengineering. 1993, vol. 41, no. 7, str. 715-727. ISSN 0006-3592. [COBISS.SI-ID 1493368]

2. JORGENSEN, Sten Bay, LUBBERT, Andreas, NIELSEN, Jens, LUYBEN, Karel, BEROVIČ, Marin, KRISTIANSEN, Bjorn, RASPOR, Peter, LEGIŠA, Matic, CIMERMAN, Aleksa, JAPELJ, Miha, POŽAR, Janja, RADEŽ, Ivan, FRIGANOVIČ, Ivo. Modelling for improved bioreactor performance. 2, Modelling of filamentous fungi : international conference, [15. - 16. September 1994, Otočec, Slovenija]. Otočec, 1994. [COBISS.SI-ID 23615749]

3. ALEKSENKO, Alexei, LIU, Wenguang, GOJKOVIĆ, Zoran, NIELSEN, Jens, PIŠKUR, Jure. Structural and transcriptional analysis of the pyrABCN, pyrD and pyrF genes inAspergillus nidulans and the evolutionary origin of fungal dihydroorotases. Molecular microbiology. 1999, letn. 33, št. 3, str. 599-611. ISSN 0950-382X. [COBISS.SI-ID 25488601]

4. SRIVASTAVA, Aradhana, PIŠKUR, Jure, NIELSEN, Jens, EGEL-MITANI, Michi. Method for the production of heterologous polypeptides in transformed yeast cells : patent no. US 6.190.883 B1, date of patent Feb. 20, 2001 : appl. no. 09/392.126, filed Sep. 8, 1999. [S. l.: s. n.], 2001. 15 str., ilustr. http://www.freepatentsonline.com/6190883.pdf, RUL. [COBISS.SI-ID 2527567]

5. MØLLER, Kasper, TIDEMAND, L.D., WINTHER, J.R., OLSSON, Lisbeth, PIŠKUR, Jure, NIELSEN, Jens. Production of a heterologous proteinase A by Saccharomyces kluyveri. Applied microbiology and biotechnology. 2001, letn. 57, št. 1-2, str. 216-219. ISSN 0175-7598. DOI: 10.1007/s002530100680. [COBISS.SI-ID 25484761]

6. MØLLER, Kasper, CHRISTENSEN, Bjarke, FÖRSTER, Jochen, PIŠKUR, Jure, NIELSEN, Jens, OLSSON, Lisbeth. Aerobic glucose metabolism of Saccharomyces kluyveri: growth, metabolite production, and quantification of metabolic fluxes. Biotechnology and bioengineering. 2002, letn. 77, št. 2, str. 186-193. ISSN 0006-3592. DOI: 10.1002/bit.10122. [COBISS.SI-ID 25484505]

7. MØLLER, Kasper, BRO, Christoffer, PIŠKUR, Jure, NIELSEN, Jens, OLSSON, Lisbeth. Steady-state and transient-state analyses of aerobic fermentation in Saccharomyces kluyveri. FEMS yeast research. [Print ed.]. 2002, letn. 2, št. 2, str. 233-244. ISSN 1567-1356. [COBISS.SI-ID 25483481]

8. NIELSEN, Jens, VILLADSEN, John, LIDÉN, Gunnar. Bioreaction engineering principles. 2nd ed. New York [etc.]: Kluwer Academic/Plenum, cop. 2003. XV, 528 str., ilustr. ISBN 0-306-47349-6. [COBISS.SI-ID 25026053]

9. MOLLER, Kasper, LANGKJAER, Rikke B, NIELSEN, Jens Høiriis, PIŠKUR, Jure, OLSSON, L. Pyruvate decarboxylases from the petite-negative yeast Saccharomyces kluyveri. Molecular genetics and genomics : MGG. 2004, letn. 270, št. 6, str. 558-568. ISSN 1617-4615. DOI: 10.1007/s00438-003-0950-z. [COBISS.SI-ID 25406681]

10. SCHWEIGER, Ana, CHRISTENSEN, I. J., NIELSEN, Jens Høiriis, SØRENSEN, Signe Maj, BRÜNNER, N..., KOS, Janko. Serum cathepsin H as a potential prognostic marker in patients with colorectal cancer. The international journal of biological markers. 2004, vol. 19, no. 3, str. 289-294. ISSN 0393-6155. [COBISS.SI-ID 1638257]

11. NIELSEN, Jens. Clinical, pathological and immunological aspects of transplacental PRRS virus infection - results from Danish experiments = Klinični, patološki in imunološki aspekti transplacentarne virusne infekcije s PRRS - rezultati danskih poskusov. In: MAJDIČ, Gregor (ed.). Program in zbornik referatov. Slovenian veterinary research. Ljubljana: Veterinarska fakulteta, 2011. Vol. 48, suppl. 13, str. 171-177. Slovenian veterinary research, Supplement, 13. ISBN 978-961-6199-54-4. ISSN 1580-4003. [COBISS.SI-ID 3479674]

12. ZRIMEC, Jan, BÖRLIN, Christoph S., BURIC, Filip, SHEIKH MUHAMMAD, Azam, CHEN, Rhongzen, SIEWERS, Verena, VERENDEL, Vilhelm, NIELSEN, Jens, TÖPEL, Mats, ZELEZNIAK, Aleksej. Deep learning suggests that gene expression is encoded in all parts of a co-evolving interacting gene regulatory structure. Nature communications. 1 Dec. 2020, vol. 11, str. 1-16, ilustr. ISSN 2041-1723. https://www.nature.com/articles/s41467-020-19921-4, DOI: 10.1038/s41467-020-19921-4. [COBISS.SI-ID 47163139]

13. LI, Gang, HU, Yating, ZRIMEC, Jan, LUO, Hao, WANG, Hao, ZELEZNIAK, Aleksej, JI, Boyang, NIELSEN, Jens. Bayesian genome scale modelling identifies thermal determinants of yeast metabolism. Nature communications. 8 Jan. 2021, vol. 12, str. 1-12, ilustr. ISSN 2041-1723. https://www.nature.com/articles/s41467-020-20338-2, DOI: 10.1038/s41467-020-20338-2. [COBISS.SI-ID 46989315]

14. LI, Gang, ZRIMEC, Jan, JI, Boyang, GENG, Jun, LARSBRINK, Johan, ZELEZNIAK, Aleksej, NIELSEN, Jens, ENGQVIST, Martin K. M. Performance of regression models as a function of experiment noise. Bioinformatics and biology insights. 2021, vol. 15, str. 1-10, ilustr. ISSN 1177-9322. https://journals.sagepub.com/doi/pdf/10.1177/11779322211020315, DOI: 10.1177/11779322211020315. [COBISS.SI-ID 71619843]

15. NØRGAARD, Sarah K, VESTERGAARD, Lasse S, NIELSEN, Jens, KLEPAC, Petra, ZALETEL, Metka, FAFANGEL, Mario, et al. Real-time monitoring shows substantial excess all-cause mortality during second wave of COVID-19 in Europe, October to December 2020. Eurosurveillance. [Online ed.]. 2021, vol. 26, iss. 2, str. 1-5, ilustr. ISSN 1560-7917. https://www.eurosurveillance.org/docserver/fulltext/eurosurveillance/26/2/eurosurv-26-2-1.pdf?expires=1620384508&id=id&accname=guest&checksum=34E3FFC4C77AC50F71C08525FDCDE43D, DOI: 10.2807/1560-7917.ES.2021.26.1.2002023. [COBISS.SI-ID 62331139]

16. ZRIMEC, Jan, FU, Xiaozhi, SHEIKH MUHAMMAD, Azam, SKREKAS, Christos, JAUNISKIS, Vykintas, SPEICHER, Nora K., BÖRLIN, Christoph S., VERENDEL, Vilhelm, CHEHREGHANI, Morteza Haghir, DUBHASHI, Devdatt P., SIEWERS, Verena, FITZ, Florian David, NIELSEN, Jens, ZELEZNIAK, Aleksej. Controlling gene expression with deep generative design of regulatory DNA. Nature communications. 30 Aug. 2022, vol. 13, str. 1-17, ilustr. ISSN 2041-1723. https://www.nature.com/articles/s41467-022-32818-8, DIRROS, DOI: 10.1038/s41467-022-32818-8. [COBISS.SI-ID 120155139]

17. SAGHALEYNI, Rasool, MALM, Magdalena, MORUZZI, Noah, ZRIMEC, Jan, RAZAVI, Ronia, WISTBACKA, Num, THORELL, Hannes, HOBER, Andreas, EDFORS, Fredrik, CHOTTEAU, Veronique, BERGGREN, Per-Olof, GRASSI, Luigi, ZELEZNIAK, Aleksej, SVENSSON, Thomas, HATTON, Diane, NIELSEN, Jens, ROBINSON, Jonathan L., ROCKBERG, Johan, et al. Enhanced metabolism and negative regulation of ER stress support higher erythropoietin production in HEK293 cells. Cell reports. 14 Jun. 2022, vol. 39, iss. 11, str. 1-19, 1e-4e, ilustr. ISSN 2211-1247. https://doi.org/10.1016/j.celrep.2022.110936, DOI: 10.1016/j.celrep.2022.110936. [COBISS.SI-ID 120217859]

18. LI, Gang, BURIC, Filip, ZRIMEC, Jan, VIKNANDER, Sandra, NIELSEN, Jens, ZELEZNIAK, Aleksej, ENGQVIST, Martin K. M. Learning deep representations of enzyme thermal adaptation. Protein science. [Online ed.]. vol. 31, iss. 12, 1-14 str., ilustr. ISSN 1469-896X. https://doi.org/10.1002/pro.4480, DIRROS, DOI: 10.1002/pro.4480. [COBISS.SI-ID 130304771]