COBISS Kooperativni online bibliografski sistem in servisi COBISS

Martin Stražar

Osebna bibliografija za obdobje 2013-2024

2013

1. MOŠKON, Miha, ZIMIC, Nikolaj, STRAŽAR, Martin, MRAZ, Miha. Comparison of selected performances of biological and electronic information processing structures. Przeglęad Elektrotechniczny. 2013, no. 2a, str. 165-169, ilustr. ISSN 0033-2097. http://pe.org.pl/abstract_pl.php?nid=7211. [COBISS.SI-ID 9649748]
2. STRAŽAR, Martin. Odkrivanje znanja iz modela genskega regulatornega omrežja : delo je pripravljeno v skladu s Pravilnikom o podeljevanju Prešernovih nagrad študentom, pod mentorstvom prof. dr. Mihe Mraza in somentorstvom dr. Mihe Moškona. Ljubljana: [M. Stražar], 2013. IX, 77 str., ilustr. http://eprints.fri.uni-lj.si/3696/. [COBISS.SI-ID 10299476]
3. STRAŽAR, Martin. Paralelni evolucijski algoritem za odkrivanje znanja iz modela genskega regulatornega omrežja : diplomsko delo. Ljubljana: [M. Stražar], 2013. 75 str., ilustr. http://eprints.fri.uni-lj.si/2069/, Repozitorij Univerze v Ljubljani – RUL. [COBISS.SI-ID 9962324]
4. LEBAR, Tina, BEZELJAK, Urban, GOLOB URBANC, Anja, JERALA, Miha, KADUNC POLAJNAR, Lucija, PIRŠ, Boštjan, SOMRAK, Maja, STRAŽAR, Martin, ZUPANČIČ, Uroš, BENČINA, Mojca, FORSTNERIČ, Vida, GABER, Rok, LONZARIĆ, Jan, MAJERLE, Andreja, OBLAK, Alja, SMOLE, Anže, JERALA, Roman. Positive feedback loop switch in mammalian cells based on noncooperative designed DNA binding domains. V: BioBricks Foundation SB6.0 2013. The 6th International Meeting on Synthetic Biology, July 9-11, Imperial College, London, UK. London: [s. n.], 2013. Str. 103. http://sb6.biobricks.org/poster/positive-feedback-loop-switch-in-mammalian-cells-based-on-noncooperative-designed-dna-binding-domains/. [COBISS.SI-ID 5340442]
5. LEBAR, Tina, BEZELJAK, Urban, GOLOB URBANC, Anja, JERALA, Miha, KADUNC POLAJNAR, Lucija, PIRŠ, Boštjan, STRAŽAR, Martin, ZUPANČIČ, Uroš, BENČINA, Mojca, FORSTNERIČ, Vida, GABER, Rok, LONZARIĆ, Jan, MAJERLE, Andreja, OBLAK, Alja, SMOLE, Anže, JERALA, Roman. Positive feedback loop switch in mammalian cells based on noncooperative designed DNA binding domains. V: PETAN, Toni (ur.), ŠPES, Aleš (ur.). Book of abstracts. 10th Meeting of the Slovenian Biochemical Society with International Participation, Ljubljana, Slovenia, September 15-18, 2013. Ljubljana: Slovenian Biochemical Society, 2013. Str. 122. ISBN 978-961-91651-8-8. [COBISS.SI-ID 36990469]

2014

6. STRAŽAR, Martin, MRAZ, Miha, ZIMIC, Nikolaj, MOŠKON, Miha. An adaptive genetic algorithm for parameter estimation of biological oscillator models to achieve target quantitative system response. Natural computing. Mar. 2014, vol. 13, no. 1, str. 119-127, ilustr. ISSN 1567-7818. [COBISS.SI-ID 9950804]
7. LEBAR, Tina, BEZELJAK, Urban, GOLOB URBANC, Anja, JERALA, Miha, KADUNC POLAJNAR, Lucija, PIRŠ, Boštjan, STRAŽAR, Martin, VUČKO, Dušan, ZUPANČIČ, Uroš, BENČINA, Mojca, FORSTNERIČ, Vida, GABER, Rok, LONZARIĆ, Jan, MAJERLE, Andreja, OBLAK, Alja, SMOLE, Anže, JERALA, Roman. A bistable genetic switch based on designable DNA-binding domains. Nature communications. Sep. 2014, vol. 5, str. 1-13, 5007, ilustr. ISSN 2041-1723. http://www.nature.com/ncomms/2014/140929/ncomms6007/full/ncomms6007.html, DOI: 10.1038/ncomms6007. [COBISS.SI-ID 5564186]

2015

8. CURK, Tomaž, STRAŽAR, Martin, ZUPAN, Blaž, ULE, Jernej. Detekcija interakcij protein-RNA z metodo iCLIP. V: ANDERLUH, Gregor (ur.), KRAŠEVEC, Nada (ur.). Proteinske pore, sekvenciranje in bioinformatika : mini simpozij 2015, [5. 11. 2015 Ljubljana]. Ljubljana: Laboratorij za molekularno biologijo in nanobiotehnologijo, Kemijski inštitut, 2015. Str. 23, ilustr. ISBN 978-961-6104-29-6. [COBISS.SI-ID 1536635075]
9. KAVŠČEK, Martin, STRAŽAR, Martin, CURK, Tomaž, NATTER, Klaus, PETROVIČ, Uroš. Yeast as a cell factory : current state and perspectives. Microbial cell factories. 2015, vol. 14, str. 94-1-94-10. ISSN 1475-2859. DOI: 10.1186/s12934-015-0281-x. [COBISS.SI-ID 28682279]

2016

10. STRAŽAR, Martin, ŽITNIK, Marinka, ZUPAN, Blaž, ULE, Jernej, CURK, Tomaž. Orthogonal matrix factorization enables integrative analysis of multiple RNA binding proteins. Bioinformatics. [Print ed.]. May 2016, vol. 32, no. 10, str. 1527-1535, ilustr. ISSN 1367-4803. http://bioinformatics.oxfordjournals.org/content/32/10/1527.full.pdf+html, DOI: 10.1093/bioinformatics/btw003. [COBISS.SI-ID 1537001923]

2017

11. STRAŽAR, Martin, ULE, Jernej, CURK, Tomaž. Global insights into condition-specific alternative splicing using ENCODE data. V: GORIČAR, Katja (ur.), HUDLER, Petra (ur.). Book of abstracts = Zbornik povzetkov. 12th Meeting of the Slovenian Biochemical Society with International Participation = 12. srečanje Slovenskega biokemijskega društva z mednarodno udeležbo, Bled 20 - 23 september 2017. Ljubljana: Slovenian Biochemical Society, 2017. Str. 36. ISBN 978-961-93879-4-8. http://bled2017.sbd.si/upload/docs/SBD2017_e-book-high-res.pdf. [COBISS.SI-ID 1537673155]
12. STRAŽAR, Martin, ULE, Jernej, CURK, Tomaž. Modelling condition-specific alternative splicing. V: GORIČAR, Katja (ur.), HUDLER, Petra (ur.). Book of abstracts = Zbornik povzetkov. 12th Meeting of the Slovenian Biochemical Society with International Participation = 12. srečanje Slovenskega biokemijskega društva z mednarodno udeležbo, Bled 20 - 23 september 2017. Ljubljana: Slovenian Biochemical Society, 2017. Str. 130. ISBN 978-961-93879-4-8. http://bled2017.sbd.si/upload/docs/SBD2017_e-book-high-res.pdf. [COBISS.SI-ID 1537668547]

2018

13. STRAŽAR, Martin. Low-rank matrix factorization in multiple kernel learning. Ljubljana: [M. Stražar], 2018. X, 162 str., ilustr. http://eprints.fri.uni-lj.si/4258/, Digitalna knjižnica Slovenije - dLib.si. [COBISS.SI-ID 1537959363]

2019

14. STRAŽAR, Martin, CURK, Tomaž. Approximate multiple kernel learning with least-angle regression. Neurocomputing. [Print ed.]. May 2019, vol. 340, str. 245-258, graf. prikazi. ISSN 0925-2312. https://www.sciencedirect.com/science/article/pii/S0925231219302449, Repozitorij Univerze v Ljubljani – RUL, DOI: 10.1016/j.neucom.2019.02.030. [COBISS.SI-ID 1538162883]
15. JERALA, Roman, BENČINA, Mojca, MAJERLE, Andreja, OBLAK, Alja, LEBAR, Tina, FORSTNERIČ, Vida, LOZNARIĆ, Jan, SMOLE, Anže, GABER, Rok, BEZELJAK, Urban, GOLOB URBANC, Anja, KADUNC POLAJNAR, Lucija, VUČKO, Dušan, STRAŽAR, Martin, PIRŠ, Boštjan, JERALA, Miha, ZUPANČIČ, Uroš, SOMRAK, Maja, LUŽNIK MARZIDOVŠEK, Zala. Bistable genetic toggle switch comprising a pair of reciprocal repressors and a positive feedback loop based on DNA-binding proteins : European patent specification EP2898074 B1, 2019-01-02. München: European patent office, 2019. [COBISS.SI-ID 27822375]
patentna družina: EP2898074 (A1), 2015-07-29; P-201200285, 2012-09-20; SI24177 (A), 2014-03-31; WO2014046626 (A9), 2018-08-16
16. GODEC, Primož, PANČUR, Matjaž, ILENIČ, Nejc, ČOPAR, Andrej, STRAŽAR, Martin, ERJAVEC, Aleš, PRETNAR ŽAGAR, Ajda, DEMŠAR, Janez, STARIČ, Anže, TOPLAK, Marko, ŽAGAR, Lan, HARTMAN, Jan, HAMILTON, Wang, BELLAZZI, Riccardo, PETROVIČ, Uroš, GARAGNA, Silvia, ZUCCOTTI, Maurizio, PARK, Dongsu, SHAULSKY, Gad, ZUPAN, Blaž. Democratized image analytics by visual programming through integration of deep models and small-scale machine learning. Nature communications. 2019, vol. 10, str. 4551-1-4551-7. ISSN 2041-1723. Repozitorij Univerze v Ljubljani – RUL, DOI: 10.1038/s41467-019-12397-x. [COBISS.SI-ID 32755751]
17. POLIČAR, Pavlin Gregor, STRAŽAR, Martin, ZUPAN, Blaž. Embedding to reference t-SNE space addresses batch effects in single-cell classification. V: KRALJ NOVAK, Petra (ur.), ŠMUC, Tomislav (ur.), DŽEROSKI, Sašo (ur.). Discovery Science : 22nd International Conference, DS 2019, Split, Croatia, October 28-30, 2019, : proceedings. Cham: Springer, 2019. Str. 246-260, ilustr. Lecture notes in computer science, Lecture notes in artificial intelligence, 11828. ISBN 978-3-030-33778-0, ISBN 978-3-030-33778-0. ISSN 0302-9743. https://link.springer.com/chapter/10.1007/978-3-030-33778-0_20, DOI: 10.1007/978-3-030-33778-0_20. [COBISS.SI-ID 178782723]
18. STRAŽAR, Martin, ŽAGAR, Lan, KOKOŠAR, Jaka, TANKO, Vesna, ERJAVEC, Aleš, POLIČAR, Pavlin Gregor, STARIČ, Anže, DEMŠAR, Janez, SHAULSKY, Gad, MENON, Vilas, LEMIRE, Andrew, PARIKH, Anup, ZUPAN, Blaž. ScOrange-a tool for hands-on training of concepts from single-cell data analytics. Bioinformatics. [Print ed.]. Jul. 2019, vol. 35, no. 14, str. 4-12, ilustr. ISSN 1367-4803. https://academic.oup.com/bioinformatics/article/35/14/i4/5529249?searchresult=1, DOI: 10.1093/bioinformatics/btz348. [COBISS.SI-ID 1538307523]

2020

19. STRAŽAR, Martin. Learning the rules of HLA-II presentation for human and microbial ligands : presented at the seminar at Department of molecular biology Massachusetts General hospital, Zoom meeting, december 4, 2020. [COBISS.SI-ID 101672195]

2021

20. STRAŽAR, Martin, TEMBA, Godfrey S., VLAMAKIS, Hera, KULLAYA, Vesla I., LYAMUYA, Furaha S., MMBAGA, Blandina T., JOOSTEN, Leo A. B., VAN DER VEN, Andre J. A. M., NETEA, Mihai G., DE MAST, Quirijn de Mast, XAVIER, Ramnik J. Gut microbiome-mediated metabolism effects on immunity in rural and urban African populations. Nature communications. 11 Aug. 2021, vol. 12, str. 1-15, ilustr. ISSN 2041-1723. https://www.nature.com/articles/s41467-021-25213-2, DOI: 10.1038/s41467-021-25213-2. [COBISS.SI-ID 101806595]
21. STRAŽAR, Martin, MOURITS, Vera P., KOEKEN, Valerie A. C. M., DE BREE, Charlotte L. J., MOORLAG, Simone J. C. F. M., JOOSTEN, Leo A. B., VAN CREVEL, Reinout, VLAMAKIS, Hera, NETEA, Mihai G., XAVIER, Ramnik J. The influence of the gut microbiome on BCG-induced trained immunity. Genome biology. [Online ed.]. 22 Sept. 2021, vol. 22, str. 1-22, ilustr. ISSN 1474-760X. https://genomebiology.biomedcentral.com/articles/10.1186/s13059-021-02482-0. [COBISS.SI-ID 101690115]

2022

22. VATANEN, Tommi, ANG, Qi Yan, SIEGWALD, Léa, SARKER, Shafiqul Alam, LE ROY, Caroline I., DUBOUX, Stéphane, DELANNOY-BRUNO, Omar, NGOM-BRU, Catherine, BOULANGÉ, Claire L., STRAŽAR, Martin, et al. A distinct clade of Bifidobacterium longumin thegut of Bangladeshi children thrives during weaning. Cell. 10 Nov. 2022, vol. 185, iss. 23, str. 4280-4297, ilustr. ISSN 1097-4172. https://www.sciencedirect.com/science/article/pii/S0092867422013265, DOI: 10.1016/j.cell.2022.10.011. [COBISS.SI-ID 141445379]
23. GODEC, Primož, ZUPAN, Blaž, TANKO, Vesna, STRAŽAR, Martin. Efficient matching of single cells and cell types. V: 2022 IEEE 10th International Conference on Healthcare Informatics : proceedings : Rochester, Minnesota, USA 11-14 June 2022. Piscataway: IEEE = The Institute of Electrical and Electronics Engineers, cop. 2022. Str. 633-638, ilustr. Proceedings (IEEE International Conference on Healthcare Informatics. Online). ISBN 978-1-6654-6845-9. ISSN 2575-2634. https://ieeexplore.ieee.org/document/9874562, DOI: 10.1109/ICHI54592.2022.00128. [COBISS.SI-ID 141114371]
24. STRAŽAR, Martin. Gut microbiome-mediated metabolism effects on immunity in rural and urban African populations. https://events.cornell.edu/event/immunogenomics_symposium. [COBISS.SI-ID 141126659]
25. STRAŽAR, Martin, PARK, Jihye Park. HLA-II immunopeptidome profiling and deep learning reveal features of antigenicity to inform antigen discovery. [COBISS.SI-ID 141947907]
26. VATANEN, Tommi, JABBAR, Karolina S., RUOHTULA, Terhi, HONKANEN, Jarno, AVILA-PACHECO, Julian, SILJANDER, Heli, STRAŽAR, Martin, OIKARINEN, Sami, HYÖTY, Heikki, ILONEN, Jorma, et al. Mobile genetic elements from the maternal microbiome shape infant gut microbial assembly and metabolism. Cell. 22 Dec. 2022, vol. 185, iss. 26, str. 4921-4936, ilustr. ISSN 1097-4172. https://www.sciencedirect.com/science/article/pii/S0092867422014672, DOI: 10.1016/j.cell.2022.11.023. [COBISS.SI-ID 141489923]

2023

27. GOLDMAN, Samuel, WOHLWEND, Jeremy, STRAŽAR, Martin, HAROUSH, Guy, XAVIER, Ramnik J., COLEY, Connor W. Annotating metabolite mass spectra with domain-inspired chemical formula transformers. Nature machine intelligence. 17 Aug. 2023, vol. 5, str. 965-979, ilustr. ISSN 2522-5839. https://www.nature.com/articles/s42256-023-00708-3, DOI: 10.1038/s42256-023-00708-3. [COBISS.SI-ID 177676291]
28. STRAŽAR, Martin, XAVIER, Ramnik J. Cytotoxic Th1 cells mushroom after fungal exposures in Crohn’s disease. Immunity. [Online ed.]. 12. Dec. 2023, vol. 56, iss. 12, str. 2679-2681, ilustr. ISSN 1097-4180. https://www.sciencedirect.com/science/article/abs/pii/S1074761323004946?via%3Dihub, DOI: 10.1016/j.immuni.2023.11.012. [COBISS.SI-ID 185890563]
29. POLIČAR, Pavlin Gregor, STRAŽAR, Martin, ZUPAN, Blaž. Embedding to reference t-SNE space addresses batch effects in single-cell classification. Machine learning. [Print ed.]. Feb. 2023, vol. 112, iss. 2, str. 721-740, ilustr. ISSN 0885-6125. https://link.springer.com/article/10.1007%2Fs10994-021-06043-1, DOI: 10.1007/s10994-021-06043-1. [COBISS.SI-ID 76932867]
30. STRAŽAR, Martin, PARK, Jihye, ABELIN, Jennifer G., TAYLOR, Hannah B., PEDERSEN, Thomas K., PLICHTA, Damian R., BROWN, Eric M., ERASLAN, Basak, HUNG, Yuan-Mao, ORTIZ, Kayla, CLAUSER, Karl R., CARR, Steven A., XAVIER, Ramnik J., GRAHAM, Daniel B. HLA-II immunopeptidome profiling and deep learning reveal features of antigenicity to inform antigen discovery. Immunity. 11 Jul. 2023, vol. 56, issue 7, str. 1681-1698, e 1-13, ilustr. ISSN 1074-7613. https://www.sciencedirect.com/science/article/abs/pii/S1074761323002261, DOI: 10.1016/j.immuni.2023.05.009. [COBISS.SI-ID 177778435]
31. SCHIRMER, Melanie, STRAŽAR, Martin, AVILA-PACHECO, Julian, ROJAS-TAPIAS, Daniel F., BROWN, Eric M., TEMPLE, Emily, DEIK, Amy, BULLOCK, Kevin, JEANFAVRE, Sarah, PIERCE, Kerry, XAVIER, Ramnik J., et al. Linking microbial genes to plasma and stool metabolites uncovers host-microbial interactions underlying ulcerative colitis disease course. Cell host & microbe. 14. Feb. 2024, vol. 32, iss. 2, str. 1-18, e1-e7, ilustr. ISSN 1934-6069. https://www.sciencedirect.com/science/article/abs/pii/S1931312823005085, DOI: 10.1016/j.chom.2023.12.013. [COBISS.SI-ID 185907203]
32. STRAŽAR, Martin. Nadzorna središča imunskega sistema. Življenje in tehnika : revija za poljudno tehniko, znanost in amaterstvo. jan. 2023, letn. 74, [št.] 1, str. 10-21, ilustr. ISSN 0514-017X. [COBISS.SI-ID 141529859]
33. LÖTSTEDT, Britta, STRAŽAR, Martin, XAVIER, Ramnik J., REGEV , Aviv, VICKOVIC, Sanja. Spatial host–microbiome sequencing reveals niches in the mouse gut. Nature biotechnology. [Online ed.]. 20 Nov. 2023, str. 1-21, ilustr. ISSN 1546-1696. https://www.nature.com/articles/s41587-023-01988-1, DOI: 10.1038/s41587-023-01988-1. [COBISS.SI-ID 177718275]

2024

34. STRAŽAR, Martin. Antigen discovery and spatial microbiome sequencing tools dive deep in the mucosa : 10th Theodor Escherich Symposium, Med Uni Graz, 18. & 19. January 2024. [COBISS.SI-ID 186016515]
35. FURUICHI, Munehiro, KAWAGUCHI, Takaaki, PUST, Marie-Madlen, YASUMA-MITOBE, Keiko, PLICHTA, Damian R., HASEGAWA, Naomi, OHYA, Takashi, STRAŽAR, Martin, et al. Commensal consortia decolonize Enterobacteriaceae via ecological control. Nature. [Online ed.]. 26 Sep. 2024, vol. 633, iss. 8031, str. 878–886, ilustr. ISSN 1476-4687. https://www.nature.com/articles/s41586-024-07960-6, DOI: 10.1038/s41586-024-07960-6. [COBISS.SI-ID 213829379]
36. LI, Chenhao, STRAŽAR, Martin, MOHAMED, Ahmed M. T., PACHECO, Julian A., WALKER, Rebecca L., LEBAR, Tina, ZHAO, Shijie, LOCKART, Julia, DAME, Andrea, THURIMELLA, Kumar, et al. Gut microbiome and metabolome profiling in Framingham heart study reveals cholesterol-metabolizing bacteria. Cell. 11 Apr. 2024, vol. 187, iss. 8, str. 1834-1852., [19] str. pril., ilustr. ISSN 1097-4172. https://www.sciencedirect.com/science/article/pii/S0092867424003052, DOI: 10.1016/j.cell.2024.03.014. [COBISS.SI-ID 213789699]
37. STRAŽAR, Martin, PARK, Jihye, ABELIN, Jennifer G., TAYLOR, Hannah B., PEDERSEN, Thomas K., PLICHTA, Damian R., HUNG, Yuan-Mao, BROWN, Eric M., ERASLAN, Basak, ORTIZ, Kayla, CLAUSER, Karl R., CARR, Steven A., GRAHAM, Daniel B., XAVIER, Ramnik J. HLA-II immunopeptidomics and deep learning reveal features of antigenicity to inform antigen discovery. V: Abstract book : 10th Theodor Escherich Symposium, Med Uni Graz & hybrid, 18. & 19. January 2024. Graz: Medical University, 2024. Str. 53. https://www.medunigraz.at/frontend/user_upload/themen-forschung/ff-mikrobiom/pdf/Theodor-Escherich-Symposium-Abstract-Book.pdf. [COBISS.SI-ID 186031363]
38. POLIČAR, Pavlin Gregor, STRAŽAR, Martin, ZUPAN, Blaž. OpenTSNE : a modular Python library for t-SNE dimensionality reduction and embedding. Journal of statistical software. May 2024, vol. 109, iss. 3, str. 1-30, ilustr. ISSN 1548-7660. https://www.jstatsoft.org/article/view/v109i03, DOI: 10.18637/jss.v109.i03. [COBISS.SI-ID 194832899]
Izbrani format bibliografske enote: ISO 690
Razvrščanje bibliografskih enot: leto - naraščajoče, naslov

Vir bibliografskih zapisov: vzajemna baza podatkov COBISS.SI/COBIB.SI, 12. 6. 2025