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Jure Pražnikar

Personal bibliography for the period 2003-2025

2003

1. PRAŽNIKAR, Jure. Ciljne funkcije pri določevanju 3-dimenzionalnih struktur makromolekul : diplomsko delo. Maribor: [J. Pražnikar], 2003. 40 f. Pedagoška fakulteta, Maribor, Fizika. [COBISS.SI-ID 12678408]

2007

2. PRAŽNIKAR, Jure, AFONINE, Pavel, TURK, Dušan. Validation of "Kick maps" : [presented at 24rd European Crystallographic Meeting, ECM24, Marrakech, 2007]. Acta crystallographica. Section A, Foundations of crystallography. 2007, vol. 63, str. s164. ISSN 0108-7673. [COBISS.SI-ID 21508647]

2008

3. ANDREJAŠIČ, Miha, PRAŽNIKAR, Jure, TURK, Dušan. PURY : a database of geometric restraints of hetero compounds for refinement in complexes with macromolecular structures. Acta crystallographica. Section D, Biological crystallography. 2008, vol. 64, no. 11, str. 1093-1109. ISSN 0907-4449. [COBISS.SI-ID 22118695]

2009

4. PRAŽNIKAR, Jure, AFONINE, Pavel, GUNČAR, Gregor, ADAMS, Paul D., TURK, Dušan. Averaged kick maps : less noise, more signal . . . and probably less bias. Acta crystallographica. Section D, Biological crystallography. 2009, issue 9, vol. 65, str. 921-931. ISSN 0907-4449. DOI: 10.1107/S0907444909021933. [COBISS.SI-ID 22793511]
5. PRAŽNIKAR, Jure. Računanje elektrostatskega potenciala okrog proteinov : doktorska disertacija = Calculating electrostatic potential around proteins : doctoral dissertation. Ljubljana: [J. Pražnikar], 2009. XIV, 68, [35] str., ilustr., tabele. [COBISS.SI-ID 246736128]

2010

6. PRAŽNIKAR, Jure, MARZI, Boris, PISANSKI, Tomaž, PLESTENJAK, Bor. Izboljšava modela notranjega transporta vozil v Luki Koper. In: Zbornik referatov. 10. slovenski kongres o cestah in prometu, Portorož, 20.-22. oktober 2010. Ljubljana: DRC - Družba za raziskave v cestni in prometni stroki Slovenije, 2010. Str. 273-278. ISBN 978-961-6527-21-7. [COBISS.SI-ID 15720281]

2012

7. ŽIBERT, Janez, PRAŽNIKAR, Jure. Cluster analysis of particulate matter (PM10) and black carbon (BC) concentrations. Atmospheric environment. [Print ed.]. 2012, vol. 57, str. 1-12. ISSN 1352-2310. DOI: 10.1016/j.atmosenv.2012.04.034. [COBISS.SI-ID 1024427092]
8. JENKO PRAŽNIKAR, Zala, PRAŽNIKAR, Jure. The effects of particulate matter air pollution on respiratory health and on the cardiovascular system = Vpliv prašnih delcev na bolezni dihal in srčno-žilnega sistema. Zdravstveno varstvo : Slovenian journal of public health. [Tiskana izd.]. 2012, letn. 51, št. 3, str. 190-199, ilustr. ISSN 0351-0026. Digitalna knjižnica Slovenije - dLib.si, Repozitorij Univerze na Primorskem - RUP, DOI: 10.2478/v10152-012-0022-z. [COBISS.SI-ID 512269625]

2013

9. PRAŽNIKAR, Jure. [Kakovost zraka in zdravje ljudi - skupen interes interes nas vseh] : [strokovno srečanje z namenom predstavitve kakovosti zraka v Sloveniji]. [2013]. [COBISS.SI-ID 1536234692]
10. PRAŽNIKAR, Jure. Spremljanje kakovosti vode in drugih okoljskih parametrov v Luki Koper : CGS konferenca 2013, Ljubljan, 15. 5. 2013. [COBISS.SI-ID 1536088260]

2014

11. PRAŽNIKAR, Jure, TURK, Dušan. Free kick instead of cross-validation in maximum-likelihood refinement of macromolecular crystal structures. Acta crystallographica. D, Biological crystallography. 2014, vol. 70, no. 12, str. 3124-3134. ISSN 1399-0047. http://journals.iucr.org/d/issues/2014/12/00/lv5072/lv5072.pdf, DOI: 10.1107/S1399004714021336. [COBISS.SI-ID 1537009860]
12. PRAŽNIKAR, Jure, CEPAK, Franka, ŽIBERT, Janez. Long-term analysis of elemental content in airborne particulate matter by PIXE and positive matrix factorization : annual trends and seasonal variability during 2003 and 2008. Atmospheric environment. [Print ed.]. 2014, vol. 94, str. 723-733. ISSN 1352-2310. http://www.sciencedirect.com/science/article/pii/S1352231014004415, DOI: 10.1016/j.atmosenv.2014.05.075. [COBISS.SI-ID 1536548804]
13. PRAŽNIKAR, Jure, ŠARABON, Nejc. Port and evnironment : lecture at Smart Cities conference, 14th - 15th October 2014, Koper. https://conferences.matheo.si/conferenceProgram.py?confId=8. [COBISS.SI-ID 1537096644]
14. NOVAK, Lovrenc, BIZJAN, Benjamin, ŠIROK, Brane, PRAŽNIKAR, Jure, HORVAT, Boris, ORBANIĆ, Alen. A study of dust lifting reduction at the coal and iron ore stockpile of the Port of Koper. In: ERSCP 2014. 17th European Roundtable on Sustainable Consumption and Production - ERSCP 2014, 14-16 October 2014, Portorož, Slovenia. Maribor: Nigrad, 2014. Datoteka paper/pdf/153_a study of dust lifting ... (9 f.), ilustr. ISBN 978-961-93738-0-4. [COBISS.SI-ID 13736219]

2015

15. OŠTIR, Krištof, ŠVAB LENARČIČ, Andreja, PEHANI, Peter, MURI, Boštjan, KOKALJ, Žiga, ŽIBERT, Janez, PRAŽNIKAR, Jure, ROGELJ, Peter, IRŠIČ ŽIBERT, Mateja. Automatic recognition of vegetation parameters from satellite data and ground measurements for drought monitoring (SatDroughtMon) : final report. Ljubljana: [Space-Si], 2015. 49 str., ilustr. [COBISS.SI-ID 86584579]
16. ŠARABON, Nejc, PEROŠA, Miha, PRAŽNIKAR, Jure, KERN, Helmut. Ergo-Cell : a multi-sensor system offering new opportunities for research in elderly. In: CIR-Myo News : Abstracts of the 2015 spring Padua muscle days : Terme Euganee, Padua (Italy), March 12-14, 2015. PadOVA: [s. n.], 2015. European Journal of Translational Myology (Online), Vol. 25, no. 3, 2015. ISSN 2037-7460. http://pagepressjournals.org/index.php/bam/article/view/bam.2015.3.145/4544, Repozitorij Univerze na Primorskem - RUP. [COBISS.SI-ID 1537307844]
17. NOVAK, Lovrenc, BIZJAN, Benjamin, PRAŽNIKAR, Jure, HORVAT, Boris, ORBANIĆ, Alen, ŠIROK, Brane. Numerical modeling of dust lifting from a complex-geometry industrial stockpile. Strojniški vestnik. Nov. 2015, vol. 61, no. 11, str. 621-631, si 115, ilustr. ISSN 0039-2480. Digitalna knjižnica Slovenije - dLib.si, DOI: 10.5545/sv-jme.2015.2824. [COBISS.SI-ID 14317339]
18. NOVAK, Lovrenc, BIZJAN, Benjamin, PRAŽNIKAR, Jure, HORVAT, Boris, ORBANIĆ, Alen, ŠIROK, Brane. Numerično modeliranje vetrovnih razmer in zmanjšanja prašenja na deponiji premoga in železove rude v Luki Koper = Numerical modeling of wind conditions and dust lifting reduction at the coal and iron ore stockpile at the Port of Koper. In: HRIBERŠEK, Matjaž (ed.), RAVNIK, Jure (ed.). Zbornik del. Kuhljevi dnevi 2015, Moravske Toplice , 24.-25. september, 2015. Ljubljana: Slovensko društvo za mehaniko, 2015. Str. 113-120, ilustr. ISBN 978-961-93859-0-6. [COBISS.SI-ID 14216475]
19. TURK, Dušan, PRAŽNIKAR, Jure, ZUPANIČ, Erik. ▫$R_{fre}$▫ : a dinosaur marked for extinction?. In: Programme book. 29th European Crystallographic Meeting, ECM29, 23rd-28th August 2015, Rovinj, Croatia. [S. l.: s. n.], 2015. Vol. 71, str. s161-162. Acta crystallographica, A, vol. 71, 2015. ISSN 0567-7394. [COBISS.SI-ID 29378087]
20. TURK, Dušan, PRAŽNIKAR, Jure. R[sub](free) : a dinosur marked for extinction?. In: Programme book. 29th European Crystallographic Meeting, ECM29, 23rd-28th August 2015, Rovinj, Croatia. [S. l.: s. n.], 2015. Vol. 71, str. s61-s162. Acta crystallographica, A, vol. 71, 2015. ISSN 0567-7394. [COBISS.SI-ID 29372967]

2016

21. ŽIBERT, Janez, CEDILNIK, Jure, PRAŽNIKAR, Jure. Particulate matter (PM10) patterns in Europe : an exploratoy data analysis using non-negative matrix factorization. Atmospheric environment. [Print ed.]. 2016, vol. 132, str. 217-228. ISSN 1352-2310. http://www.sciencedirect.com/science/article/pii/S1352231016301741, Repozitorij Univerze na Primorskem - RUP, DOI: 10.1016/j.atmosenv.2016.03.005. [COBISS.SI-ID 1538229188]

2017

22. TOMIĆ, Miloš. Grafi struktur proteinov = Protein graphs : uporaba teorije grafov za analizo makromolekulskih struktur = using insights from graph theory in analysis of macromolecular structures : zaključna naloga. Koper: [M. Tomić], 2017. VIII, 29 f., ilustr. https://www.famnit.upr.si/sl/studij/zakljucna_dela/view/535, Repozitorij Univerze na Primorskem - RUP. [COBISS.SI-ID 1539536324]
23. PRAŽNIKAR, Jure. Particulate matter time-series and Köppen-Geiger climate classes in North America and Europe. Atmospheric environment. [Print ed.]. 2017, vol. 150, str. 136-145. ISSN 1352-2310. http://dx.doi.org/10.1016/j.atmosenv.2016.11.056. [COBISS.SI-ID 1538922436]

2019

24. PRAŽNIKAR, Jure, TOMIĆ, Miloš, TURK, Dušan. Validation and quality assessment of macromolecular structures using complex network analysis : [presented at 31st European Crystallography Meeting Oviedo, Spain, 22-27 August, 2018]. Acta crystallographica. Section A, Foundations and advances. 2019, vol. 74, str. e47. ISSN 2053-2733. http://journals.iucr.org/a/issues/2018/a2/00/. [COBISS.SI-ID 32463911]
25. PRAŽNIKAR, Jure, TOMIĆ, Miloš, TURK, Dušan. Validation and quality assessment of macromolecular structures using complex network analysis. Scientific reports. 2019, vol. 9, str. 1-11, ilustr. ISSN 2045-2322. https://www.nature.com/articles/s41598-019-38658-9, Repozitorij Univerze na Primorskem - RUP, DOI: 10.1038/s41598-019-38658-9. [COBISS.SI-ID 1541072324]
26. PRAŽNIKAR, Jure. Validation and quality assessment of macromolecular structures using complex network analysis : [protein model analysis]. [Koper: Univerza na Primorskem; Geneve: CERN, 2019]. 1 spletni vir. Zenodo. https://zenodo.org/record/5813014, https://doi.org/10.1038/s41598-019-38658-9. [COBISS.SI-ID 92865539]
27. PRAŽNIKAR, Jure. Validation and quality assessment of macromolecular structures using complex network analysis, Institute of Pharrmacy, Halle, 11th December 2019. [COBISS.SI-ID 1541854148]

2020

28. KRANJC, Katja, PETELIN, Ana, PRAŽNIKAR, Jure, NOVA, Esther, REDONDO, Noemi, ASCENSIÓN, Marcos, JENKO PRAŽNIKAR, Zala. Obesity measures and dietary parameters as predictors of gut microbiota phyla in healthy individuals. Nutrients. 2020, vol. 12, iss. 9, str. 1-18, ilustr. ISSN 2072-6643. https://www.mdpi.com/2072-6643/12/9/2695, Repozitorij Univerze na Primorskem - RUP, DOI: 10.3390/nu12092695. [COBISS.SI-ID 27489283]
29. BUČAR, Klemen, MALET, Jeanne, STABILE, Luca, PRAŽNIKAR, Jure, SEEGER, Stefan, ŽITNIK, Matjaž. Statistics of a sharp GP2Y low-cost aerosol PM sensor output signals. Sensors. 2020, vol. 20, iss. 23, str. 1-14, ilustr. ISSN 1424-8220. https://www.mdpi.com/1424-8220/20/23/6707, Repozitorij Univerze v Ljubljani – RUL, DOI: 10.3390/s20236707. [COBISS.SI-ID 40691715]

2021

30. PRAŽNIKAR, Jure. Scaling laws of graphs of 3D protein structures. Journal of bioinformatics and computational biology. 2021, vol. 19, no. 1, str. 2050050-1-2050050-15, ilustr. ISSN 0219-7200. https://www.worldscientific.com/doi/abs/10.1142/S021972002050050X, Repozitorij Univerze na Primorskem - RUP, DOI: 10.1142/S021972002050050X. [COBISS.SI-ID 48011267]
31. PRAŽNIKAR, Jure. Scaling laws of graphs of 3D protein structures : [data]. [Koper: Univerza na Primorskem; Geneve: CERN, 2021]. 1 spletni vir. Zenodo. https://zenodo.org/record/5812736, https://doi.org/10.1142/S021972002050050X. [COBISS.SI-ID 92871427]

2022

32. PRAŽNIKAR, Jure, ATTYGALLE, Nuwan. Quantitative analysis of visual codewords of a protein distance matrix. PloS one. Febr. 2022, iss. 2, art. e0263566, str. 1-16, ilustr. ISSN 1932-6203. https://journals.plos.org/plosone/article/authors?id=10.1371/journal.pone.0263566, https://doi.org/10.1371/journal.pone.0263566, DOI: 10.1371/journal.pone.0263566. [COBISS.SI-ID 96611843]
33. PRAŽNIKAR, Jure. Quantitative analysis of visual codewords of a protein distance matrix : [data]. [Koper: Univerza na Primorskem; Geneve: CERN, 2022]. 1 spletni vir. Zenodo. https://zenodo.org/record/5906637, https://doi.org/10.1371/journal.pone.0263566. [COBISS.SI-ID 102371331]
34. ŠTRBAC, Ivana. Validacija programske opreme za molekulsko sidranje CmDock : zaključna naloga = Extensive validation of molecular docking software CmDock : final project paper. Koper: [I. Štrbac], 2022. VIII, 25 str., ilustr. https://www.famnit.upr.si/sl/studij/zakljucna_dela/view/1135, Repozitorij Univerze na Primorskem - RUP. [COBISS.SI-ID 127351043]
35. KRAMBERGER, Katja, BARLIČ-MAGANJA, Darja, JENKO PRAŽNIKAR, Zala, REŽEN, Tadeja, ROZMAN, Damjana, PRAŽNIKAR, Jure, KENIG, Saša, et al. Whole transcriptome expression array analysis of human colon fibroblasts culture treated with Helichrysum italicum supports its use in traditional medicine. Journal of ethnopharmacology. [Print ed.]. 2022, letn. 296, št. 3, str. 1-10, ilustr. ISSN 0378-8741. Repozitorij Univerze v Ljubljani – RUL, DOI: 10.1016/j.jep.2022.115505. [COBISS.SI-ID 113401603]

2023

36. ŠIK NOVAK, Karin, BOGATAJ JONTEZ, Nives, PETELIN, Ana, HLADNIK, Matjaž, BARUCA ARBEITER, Alenka, BANDELJ, Dunja, PRAŽNIKAR, Jure, KENIG, Saša, MOHORKO, Nina, JENKO PRAŽNIKAR, Zala. Could gut microbiota composition be a useful indicator of a long-term dietary pattern?. Nutrients. 2023, iss. 9, art. 2196, str. 1-26, ilustr. ISSN 2072-6643. https://www.mdpi.com/2072-6643/15/9/2196, https://doi.org/10.3390/nu15092196, DOI: 10.3390/nu15092196. [COBISS.SI-ID 151457027]
37. RAKIĆ, Marija. Raziskovanje znotrajdomene prožnosti proteinskih domen z uporabo eksperimentalnih podatkov iz podatkovne baze SCOPe : zaključna naloga = Exploring intra-domain flexibility of protein domains using experimental data from the scope database : final project paper. Koper: [M. Rakić], 2023. VIII, 28 str., ilustr. https://www.famnit.upr.si/sl/studij/zakljucna_dela/view/1153, Repozitorij Univerze na Primorskem - RUP. [COBISS.SI-ID 144504323]
38. PRAŽNIKAR, Jure. Using graphlet degree vectors to predict atomic displacement parameters in protein structures. Acta crystallographica. Section D, Structural biology. 2023, vol. d79, str. 1-11, ilustr. ISSN 2059-7983. https://onlinelibrary.wiley.com/iucr/doi/10.1107/S2059798323009142, https://doi.org/10.1107/S2059798323009142, DOI: 10.1107/S2059798323009142. [COBISS.SI-ID 174107907]
39. KRAMBERGER, Katja, BARLIČ-MAGANJA, Darja, JENKO PRAŽNIKAR, Zala, PRAŽNIKAR, Jure, KENIG, Saša, et al. Whole transcriptome expression array analysis of human colon fibroblasts culture treated with Helichrysum italicum supports its use in traditional medicine. In: KRANJC BREZAR, Simona (ed.), ČEMAŽAR, Maja (ed.), MARKELC, Boštjan (ed.). 9th Colloquium of Genetics : book of abstracts : September 29th 2023, National Institute of Biology, Marine Biology Station Piran. Ljubljana: Genetic Society of Slovenia in collaboration with the Slovenian Society of Human Genetics, 2023. Str. 48-49. ISBN 978-961-93545-8-2. https://2023.sgd.si/wp-content/uploads/2023/09/SGD-Kolokvij_2023_CIP.pdf. [COBISS.SI-ID 174517251]

2024

40. MILISAVLJEVIĆ, Andrej. In silico analiza aminokislinske sestave vezavnih mest na virusnih proteinih : zaključna naloga = In silico analysis of the amino acid composition of binding sites on viral proteins : final project paper. Koper: [A. Milisavljević], 2024. 1 spletni vir (1 datoteka PDF (IX, 25 str., [1] str. pril.)), ilustr. Repozitorij Univerze na Primorskem - RUP. [COBISS.SI-ID 201663235]
41. PRAŽNIKAR, Jure. The relationship between climate classes and particulate matters over Europe. Scientific reports. 2024, vol. 14, article no. 28821, str. 1-10, ilustr. ISSN 2045-2322. https://doi.org/10.1038/s41598-024-80365-7, DOI: 10.1038/s41598-024-80365-7. [COBISS.SI-ID 215890435]
42. ŠIK NOVAK, Karin, BOGATAJ JONTEZ, Nives, PETELIN, Ana, HLADNIK, Matjaž, BARUCA ARBEITER, Alenka, BANDELJ, Dunja, PRAŽNIKAR, Jure, KENIG, Saša, MOHORKO, Nina, JENKO PRAŽNIKAR, Zala. Sestava črevesne mikrobiote kot kazalnik dolgoročnih načinov prehranjevanja = Gut microbiota composition as a marker of long-term dietary patterns. In: PETELIN, Ana (ed.). Zdravje delovno aktivnih in starejših odraslih : 7. znanstvena in strokovna konferenca z mednarodno udeležbo : [Izola, 19. in 20. september 2024] : zbornik povzetkov z recenzijo = Health of Working-Age and Older Adults : 7th scientific and professional international conference : [Izola, 19th and 20th September 2024] : book of abstracts. Brezplačna elektronska izd. Koper: Založba Univerze na Primorskem: = University of Primorska Press, 2024. Str. 80-81. ISBN 978-961-293-369-2, ISBN 978-961-293-370-8. https://www.hippocampus.si/ISBN/978-961-293-369-2.pdf. [COBISS.SI-ID 218103555]
43. PUGACHEVA, Olga. Uporaba nevronskih mrež za napovedavanje temperaturnih faktorjev atomov proteina : zaključna naloga = Prediction of protein temperature factor using neural networks : final project paper. Koper: [O. Pugacheva], 2024. 1 spletni vir (1 datoteka PDF (VII, 31 str.)), ilustr. Repozitorij Univerze na Primorskem - RUP. [COBISS.SI-ID 220471299]

2025

44. JAKUS, Tadeja, ŠIK NOVAK, Karin, BOGATAJ JONTEZ, Nives, PRAŽNIKAR, Jure, MOHORKO, Nina, JENKO PRAŽNIKAR, Zala. Exploring taste sensitivity variation across different dietary patterns : a cross-sectional study. Journal of food and nutrition research. 2025, vol. 64, iss. 1, str. 38-49, ilustr. ISSN 1336-8672. https://www.vup.sk/en/index.php?mainID=2&navID=34&version=2&volume=64&article=2379. [COBISS.SI-ID 229600259]
45. PRAŽNIKAR, Jure. Prediction of temperature factors in proteins : effect of data pre-processing and experimental conditions. Crystals. May 2025, vol. 15, iss. 5, [article no.] 455, str. 1-15, ilustr. ISSN 2073-4352. https://www.mdpi.com/2073-4352/15/5/455, DOI: 10.3390/cryst15050455. [COBISS.SI-ID 235677955]
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A source of bibliographic data: shared data base COBISS.SI/COBIB.SI, 24. 5. 2025