Matija Boris Peterlin

1. LU, Xiaobin, WU, Xiaoning, PLEMENITAŠ, Ana, YU, Haifeng, SAWAI, Earl T., ABO, Arie, PETERLIN, Matija Boris. CDC42 and Rac1 are implicated in the activation of the Nef-associated kinase and replication of HIV-1. Current biology. [Print ed.]. 1996, let. 6, št. 12, str. 1677-1684. ISSN 0960-9822. [COBISS.SI-ID 165337]

2. PLEMENITAŠ, Ana, LU, X..., WU, X..., SIMON, M... N., PETERLIN, Matija Boris. Nef from human immunodeficiency virus activates MAP kinase signalling pathway equivalently in primate cells and in yeast. In: ZORKO, Matjaž (ed.), KOMEL, Radovan (ed.). Book for abstracts. 2nd Meeting of the Slovenian Biochemical Society with international participation, Otočec, October 1-4, 1997. Ljubljana: Slovenian Biochemical Society, 1997. Str. 105. [COBISS.SI-ID 6962649]

3. ULE, Jernej. Vpliv Nef proteina virusa HIV1 na transkripcijo in oblikovanje paritvenih projekcij v S. cerevisiae : Krkina naloga študentom za leto 1998. Ljubljana: [J. Ule], 1998. 47 str., ilustr. [COBISS.SI-ID 389455]

4. PLEMENITAŠ, Ana, LU, Xiaobin, GEYER, Matthias, VERANIČ, Peter, SIMON, Marie-Noelle, PETERLIN, Matija Boris. Activation of the Ste20 by Nef from human immunodeficiency virus induces cytokeleton rearrangements and downstream effector functions in Saccharomyces cerevisiae. Virology. 1999, letn. 258, str. 271-281. ISSN 0042-6822. [COBISS.SI-ID 10086873]

5. TAUBE, Ran, FUJINAGA, Koh, WIMMER, Joerg, BARBORIČ, Matjaž, PETERLIN, Matija Boris. Tat transactivation : a model for the regulation of eukaryotic transcriptional elongation. Virology. 1999, letn. 264, št. 2, str. 245-253. ISSN 0042-6822. [COBISS.SI-ID 14007513]

6. CUJEC, T... P., PETERLIN, Matija Boris. Transcriptional activation by the HIV trans-activator tat requires two serine/thereonine kinases which phosphorylate the C-terminal domain of RNA polymerase II. In: LAH TURNŠEK, Tamara (ed.), TURK, Tom (ed.), DOLINAR, Marko (ed.). Zbornik povzetkov = Book of abstracts. 3. Srečanje slovenskega biokemijskega društva z mednarodno udeležbo = 3. Meeting of the Slovenian Biochemical Society with International Participation, Portorož, 25.-29. september, 1999. [Ljubljana]: Slovensko biokemijsko društvo: = Slovenian Biochemical Society, 1999. Str. 57. [COBISS.SI-ID 10224089]

7. NEKREP, N..., JABRANE-FERRAT, N..., TOSI, G..., PETERLIN, Matija Boris. Bare lymphocyte syndrome and the regulation of antigen processing and presentation. In: GLAVAČ, Damjan (ed.), RAVNIK-GLAVAČ, Metka (ed.). Congress proceedings. 2nd Congress of Genetic Society of Slovenia with International Participation, Bled, September 13 - 17, 2000. Ljubljana: Slovensko genetsko društvo: = Genetic Society Slovenia, 2000. Str. 19-20. ISBN 961-90534-2-7. [COBISS.SI-ID 12014041]

8. BARBORIČ, Matjaž, TAUBE, Ran, NEKREP, Nada, FUJINAGA, Koh, PETERLIN, Matija Boris. Binding of Tat to TAR and recruitment of positive transcription elongation factor b occur independently in bovine immunodeficiency virus. Journal of virology. 2000, letn. 74, št. 13, str. 6039-6044. ISSN 0022-538X. [COBISS.SI-ID 14007257]

9. OKAMOTO, Hiroshi, PETERLIN, Matija Boris, CUJEC, Thomas P. Mechanisms by which the HIV-encoded Tat protein increases the efficiency of transcriptional elongation by RNA polymerase II = Mehanizem HIV-kodiranega Tat proteina, s katerim poveča učinkovitost transkripcije z RNA polimerazo II. Acta biologica slovenica : ABS. [Tiskana izd.]. 2000, letn. 43, št. 1/2, str. 99-108. ISSN 1408-3671. [COBISS.SI-ID 13144281]

10. ZENG, Yong-Hui, PLEMENITAŠ, Ana, LINNEMANN, Thomas, FACKLER, Oliver T, PETERLIN, Matija Boris. Nef increases infectivity of HIV via lipid rafts. Current biology. [Print ed.]. 2001, letn. 11, str. 875-879. ISSN 0960-9822. [COBISS.SI-ID 12914649]

11. BARBORIČ, Matjaž, NISSEN, Robert M, KANAZAWA, Satoshi, JABRANE-FERRAT, Nabila, PETERLIN, Matija Boris. NF-kappaB binds P-TEFb to stimulate transcriptional elongation by RNA polymerase II. Molecular cell. [Print ed.]. 2001, letn. 8, št. 2, str. 327-337. ISSN 1097-2765. [COBISS.SI-ID 14007001]

12. NEKREP, Nada, JABRANE-FERRAT, Nabila, WOLF, Hermann M., EIBL, Martha M., GEYER, Matthias, PETERLIN, Matija Boris. Mutation in a winged-helix DNA-binding motif causes atypical bare lymphocyte syndrome. Nature immunology. [Print ed.]. Nov. 2002, vol. 3, issue 11, str. 1075-1081. ISSN 1529-2908. DOI: 10.1038/ni840. [COBISS.SI-ID 516929817]

13. JABRANE-FERRAT, Nabila, NEKREP, Nada, TOSI, Giovanni, ESSERMAN, Laura, PETERLIN, Matija Boris. MHC class II enhanceosome : how is the class II transactivator recruited to DNA-bound activators?. International immunology. Apr. 2003, vol. 15, issue 4, str. 467-475. ISSN 0953-8178. DOI: 10.1093/intimm/dxg048. [COBISS.SI-ID 516924953]

14. ZHANG, Fan, BARBORIČ, Matjaž, BLACKWELL, T. Keith, PETERLIN, Matija Boris. A model of repression: CTD analogs and PIE-1 inhibit transcriptional elongation by P-TEFb. Genes & development. 2003, letn. 17, št. 6, str. 748-758. ISSN 0890-9369. [COBISS.SI-ID 16469465]

15. ZHENG, Yong-Hui, PLEMENITAŠ, Ana, FIELDING, Christopher J., PETERLIN, Matija Boris. Nef increases the synthesis of and transports cholesterol to lipid rafts and HIV-1 progeny virions. Proceedings of the National Academy of Sciences of the United States of America. 2003, letn. 100, št. 14, str. 8460-8465. ISSN 0027-8424. [COBISS.SI-ID 16445913]

16. BARBORIČ, Matjaž. Vloga in uravnavanje P-TEFb pri elongaciji prepisovanja evkariontskih in virusnih genov = The function and regulation of P-TEFb in trsnscriptional elongation of eukaryotic and viral genes : doktorsko delo. Ljubljana: [M. Barborič], 2003. 117 f., ilustr., tabele. [COBISS.SI-ID 2657556]

17. NEKREP, Nada. Vpliv strukture in povezav med proteini regulatornega dejavnika X na prepisovanje genov poglavitnega histokompatibilnega kompleksa II = The effect of structure and interactions between the proteins of the regulatory factor X on transcription of major histocompatibility complex class II genes : doktorsko delo. Ljubljana: [N. Nekrep], 2003. 103 f., ilustr. [COBISS.SI-ID 124779520]

18. NEKREP, Nada, FONTES, Joseph D., GEYER, Matthias, PETERLIN, Matija Boris. When the lymphocyte loses its clothes. Immunity. Apr. 2003, vol. 18, issue 4, str. 453-457. ISSN 1074-7613. [COBISS.SI-ID 516923929]

19. COSTA, Luciana J., ZHENG, Yong-Hui, SABOTIČ, Jerica, MAK, Johnson, FACKLER, O. T., PETERLIN, Matija Boris. Nef binds p6* in GagPol during replication of human immunodeficiency virus type 1. Journal of virology. 2004, vol. 78, str. 5311-5323. ISSN 0022-538X. [COBISS.SI-ID 18670631]

20. BARBORIČ, Matjaž, KOHOUTEK, Jiři, PRICE, Jason P ..., BLAZEK, Dalibor, PRICE, David H..., PETERLIN, Matija Boris, et al. Interplay between 7SK snRNA and oppositely charged regions in HEXIM1 direct the inhibition of P-TEFb. The EMBO journal. 2005, vol. 24, no.24, str. 4291-4303, graf. prikazi. ISSN 0261-4189. [COBISS.SI-ID 24766509]

21. ZHENG, Yong-Hui, PETERLIN, Matija Boris. Intracellular immunity to HIV-I: newly defined retroviral battles inside infected cells. Retrovirology. Online ed. 2005, 2, 25, str. 1-13, ilustr. ISSN 1742-4690. http://www.retrovirology.com/. [COBISS.SI-ID 24774189]

22. BARBORIČ, Matjaž, PETERLIN, Matija Boris. A new paradigm in eukaryotic biology: HIV Tat and the control of transcriptional elongation. PLoS biology. 2005, vol. 3, issue 2, str. 200-203, graf. prikazi. ISSN 1544-9173. [COBISS.SI-ID 24773677]

23. ZHENG, Yong-Hui, LOVŠIN, Nika, PETERLIN, Matija Boris. Newly identified host factors modulate HIV replication. Immunology letters. [Print ed.]. 2005, 97, str. 225-234, ilustr. ISSN 0165-2478. [COBISS.SI-ID 24773933]

24. BLAZEK, Dalibor, BARBORIČ, Matjaž, KOHOUTEK, Jiři, OVEN, Irena, PETERLIN, Matija Boris. Oligomerization of HEXIM1 via 7SK snRNA and coiled-coil region directs the inhibition of P-TEFb. Nucleic acids research. 2005, letn. 33, št. 22, str. 7000-7010. ISSN 0305-1048. [COBISS.SI-ID 1837960]

25. BLAZEK, Dalibor, BARBORIČ, Matjaž, KOHOUTEK, Jiři, OVEN, Irena, PETERLIN, Matija Boris. Oligomerization of HEXIM1 via 7SK snRNA coiledcoil region directs the inhibition of P-TEFb. In: CONAWAY, Joan (ed.). Abstracts of papers presented at the 2005 meeting on Mechanisms of eukaryotic transcription : August 31-September 4, 2005, New York. New York: Cold Spring Harbor Laboratory, 2005. Str. 40. [COBISS.SI-ID 2465160]

26. MEDLIN, Joanne, SCURRY, Andrew, TAYLOR, Alice, ZHANG, Fan, PETERLIN, Matija Boris, MURPHY, Shona, et al. P-TEFb is not an essential elongation factor for the intronless human U2 snRNA and histone H2b genes. The EMBO journal. 2005, vol. 24, no.23, str. 4154-4165, graf. prikazi. ISSN 0261-4189. [COBISS.SI-ID 24772909]

27. OVEN, Irena, DROŽINA, Gorazd, NARAT, Mojca, PETERLIN, Matija Boris. Regulation of MHC class II expression by CIITA isoform. In: CONAWAY, Joan (ed.). Abstracts of papers presented at the 2005 meeting on Mechanisms of eukaryotic transcription : August 31-September 4, 2005, New York. New York: Cold Spring Harbor Laboratory, 2005. Str. 216. [COBISS.SI-ID 2464904]

28. OVEN, Irena, DROŽINA, Gorazd, NARAT, Mojca, PETERLIN, Matija Boris. Role of CIITA isoform I in expression of MHC class II genes. In: KOS, Janko (ed.), CIMERMAN, Nina (ed.), DROBNIČ-KOŠOROK, Marinka (ed.). 6th Meeting of the Slovenian Biochemical Society with International Participation, Lipica, September 21-25, 2005. Ljubljana: Slovenian Biochemical Society, 2005. Str. 115. ISBN 961-91651-0-1. [COBISS.SI-ID 1784712]

29. JIANG, Huimin, ZHANG, Fan, KUROSU, Takeshi, PETERLIN, Matija Boris, et al. Runx1 binds positive transcription elongation factor b and represses transcriptional elongation by RNA polymerase II: possible mechanism of CD4 silencing. Molecular and cellular biology. 2005, vol. 25, no.24, str. 10675-10683, graf. prikazi. ISSN 0270-7306. [COBISS.SI-ID 24773421]

30. LOVŠIN, Nika, ZHENG, Yong-Hui, PETERLIN, Matija Boris. Towards the physiological role of APOBEC3. In: BIENIASZ, Paul (ed.), CUNNINGHAM, James (ed.). Abstracts of papers presented at the 2005 meeting on Retroviruses : May 24 - May 29, 2005, New York. arranged by Paul Bieniasz, James Cunningham. New York: Cold Spring Harbor Laboratory, 2005. Str. 238. [COBISS.SI-ID 21836839]

31. BARBORIČ, Matjaž, ZHANG, Fan, PODLESNIK BESENIČAR, Mojca, PLEMENITAŠ, Ana, PETERLIN, Matija Boris, et al. Ubiquitylation of Cdk9 by Skp2 facilities optimal Tat transactivation. Journal of virology. 2005, vol. 79, no.17, str. 11135-11141, ilustr. ISSN 0022-538X. [COBISS.SI-ID 24774445]

32. KANAZAWA, Satoshi, OTA, Shusuke, SEKINE, Chiyoko, TADA, Toyohiro, OTSUKA, Takanobu, OKAMOTO, Takashi, SONDERSTRUP, Grete, PETERLIN, Matija Boris. Aberrant MHC class II expression in mouse joints leads to arthritis with extraarticular manifestations similar to rheumatoid arthritis. Proceedings of the National Academy of Sciences of the United States of America. 2006, vol. 103, issue 39, str. 14465-14470, ilustr. ISSN 0027-8424. DOI: 10.1073/pnas.0606450103. [COBISS.SI-ID 29174489]

33. OVEN, Irena, BRDICKOVA, N., VAUPOTIČ, Tomaž, NARAT, Mojca, PETERLIN, Matija Boris. Autoimmune regulator (AIRE) and its role in transcriptional elongation of genes in medullary thymic epithelial cells. In: RANDBRUCH, Andreas (ed.). Immunity and autoimmunity. ENII-EFIS Conference 2006, Capo Caccia, Sardinia, May 20-25,2006. [S.l.: s.n.], 2006. Str. 65. [COBISS.SI-ID 1886600]

34. JABRANE-FERRAT, Nabila, CAMPELL, MJ, ESSERMAN, LJ, PETERLIN, Matija Boris. Challenge with mammary tumor cells expressing MHC class II and CD80 prevents the development of spontaneously arising tumors in MMTV-neu transgenic mice. Cancer gene therapy. [Print ed.]. 2006, vol. 13, issue 11, str. 1002-1010. ISSN 0929-1903. DOI: 10.1038/sj.cgt.7700974. [COBISS.SI-ID 29174233]

35. PETERLIN, Matija Boris, PRICE, David H. Controlling the elongation phase of transcription with P-TEFb. Molecular cell. [Print ed.]. 2006, vol. 23, issue 3, str. 297-305. ISSN 1097-2765. DOI: 10.1016/j.molcel.2006.06.014. [COBISS.SI-ID 29181401]

36. LENASI, Tina, PETERLIN, Matija Boris, DOVČ, Peter. Distal regulation of alternative splicing by splicing enhancer in equine ß-casein intron 1. RNA. 2006, letn. 12, št. 3, str. 1-10. ISSN 1355-8382. [COBISS.SI-ID 1838472]

37. KOHOUTEK, Jiři, BLAZEK, Dalibor, PETERLIN, Matija Boris. Hexim1 sequesters positive transcription elongation factor b from the class II transactivator on MHC class II promoters. Proceedings of the National Academy of Sciences of the United States of America. 2006, vol. 103, no. 46, str. 17349-17354, ilustr. ISSN 0027-8424. DOI: 10.1073/pnas.0603079103. [COBISS.SI-ID 29181657]

38. CONTRERAS, Xavier, LENASI, Tina, PETERLIN, Matija Boris. HIV latency : present knowledge and future directions. Future virology. 2006, letn. 1, št. 6, str. 733-745. ISSN 1746-0794. [COBISS.SI-ID 23863257]

39. COSTA, L. J., CHEN, Nan, LOPES, Adriana, AGUIAR, Renato S., TANURI, Amilcar, PLEMENITAŠ, Ana, PETERLIN, Matija Boris. Interactions between Nef and AIP1 proliferate multivesicular bodies and facilitate egress of HIV-1. Retrovirology. Online ed. 2006, letn. 3, str. [1-11], 33. ISSN 1742-4690. [COBISS.SI-ID 21689561]

40. PETERLIN, Matija Boris. Nef : out and in?. Nature immunology. [Print ed.]. 2006, vol. 7, issue 3, str. 229-230. ISSN 1529-2908. DOI: 10.1038/ni0306-229. [COBISS.SI-ID 29181145]

41. DROŽINA, Gorazd, KOHOUTEK, Jiři, NISHIYA, Tadashi, PETERLIN, Matija Boris. Sequential modifications in class II transactivator isoform 1 induced by lipopolysaccharide stimulate major histocompatibility complex class II transcription in macrophages. The Journal of biological chemistry. 2006, vol. 281, issue 52, str. 39963-39970. ISSN 0021-9258. DOI: 10.1074/jbc.M608538200. [COBISS.SI-ID 516762649]

42. OVEN, Irena, BRDIČKOVÁ, Naděžda, KOHOUTEK, Jiři, VAUPOTIČ, Tomaž, NARAT, Mojca, PETERLIN, Matija Boris. AIRE recruits P-TEFb for transcriptional elongation of target genes in medullary thymic epithelial cells. Molecular and cellular biology. 2007, letn. 27, št. 24, str. 8815-8823. ISSN 0270-7306. [COBISS.SI-ID 2213000]

43. OKEOMA, Chioma M., LOVŠIN, Nika, PETERLIN, Matija Boris, MARKI, Susan Ross. APOBEC3 inhibits mouse mammary tumour virus replication in vivo. Nature : the international weekly journal of science. [Print ed.]. 2007, vol. 445, no. 7130, str. 927-930. ISSN 0028-0836. [COBISS.SI-ID 20903975]

44. CONTRERAS, Xavier, BARBORIČ, Matjaž, LENASI, Tina, PETERLIN, Matija Boris. HMBA releases P-TEFb from HEXIM1 and 7SK snRNA via PI3K/Akt and activities HIV transcription. PLOS pathogens. 2007, letn. 3, št. 10, str. 1459-1469. ISSN 1553-7366. http://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.0030146, Repozitorij Univerze v Ljubljani – RUL, DOI: 10.1371/journal.ppat.0030146. [COBISS.SI-ID 2204808]

45. OVEN, Irena, BRDIČKOVA, Naděžda, KOHOUTEK, Jiři, VAUPOTIČ, Tomaž, NARAT, Mojca, PETERLIN, Matija Boris. Interplay between AIRE and P-TEFb and its role in establishment. In: POKLAR ULRIH, Nataša (ed.), ABRAM, Veronika (ed.), CIGIĆ, Blaž (ed.). Zbornik povzetkov = Book of abstracts. 7. srečanje Slovenskega biokemijskega društva z mednarodno udeležbo, 26.-29. september 2007 = 7th Meeting of the Slovenian Biochemical Society with International Participation, Maribor, September 26th to 29th, 2007. Ljubljana: Slovensko biokemijsko društvo: = Slovenian Biochemical Society, 2007. Str. 169. ISBN 978-961-91651-3-3. [COBISS.SI-ID 2157704]

46. LENASI, Tina, PETERLIN, Matija Boris, DOVČ, Peter. Splicing enhancer in intron 1 regulates alternative splicing from a great distance. In: Abstracts of papers presented at the 2007 meeting on Eukaryotic mRNA processing, August 22 - August 26, 2007. New York: Cold Spring Harbor, 2007. Str. 106. [COBISS.SI-ID 24003545]

47. DAMES, Sonja A., SCHÖNICHEN, André, SCHULTE, Antje, BARBORIČ, Matjaž, PETERLIN, Matija Boris, GRZESIEK, Stephan, GEYER, Matthias. Structure of the Cyclin T binding domain of Hexim1 and molecular basis for its recognition of P-TEFb. Proceedings of the National Academy of Sciences of the United States of America. 2007, vol. 104, issue 36, str. 14312-14317, ilustr. ISSN 0027-8424. DOI: 10.1073/pnas.0701848104. [COBISS.SI-ID 29182425]

48. BARBORIČ, Matjaž, YIK, Jasper H. N., CZUDNOCHOWSKI, Nadine, YANG, Zhiyuan, CHEN, Ruichuan, CONTRERAS, Xavier, GEYER, Matthias, PETERLIN, Matija Boris, ZHOU, Qiang. Tat competes with HEXIM1 to increase the active pool of P-TEFb for HIV-1 transcription. Nucleic acids research. 2007, vol. 35, issue 6, str. 2003-2012, ilustr. ISSN 0305-1048. DOI: 10.1093/nar/gkm063. [COBISS.SI-ID 29182681]

49. LENASI, Tina, CONTRERAS, Xavier, PETERLIN, Matija Boris. Transcriptional interference : a model of HIV latency. In: Abstracts of papers presented at the 2007 meeting on Eukaryotic mRNA processing, August 22 - August 26, 2007. New York: Cold Spring Harbor, 2007. Str. 107. [COBISS.SI-ID 24003801]

50. DROŽINA, Gorazd. Vloga posttranslacijskih modifikacij CIITA pri prepisovanju genov MHC II : doktorska disertacija. [Ljubljana: G. Drožina, 2007]. 80 f., [13] f. pril., ilustr. [COBISS.SI-ID 233479424]

51. OKEOMA, Chioma M., LOVŠIN, Nika, PETERLIN, Matija Boris, ROSS, S. R. APOBEC3 cytidene deaminases - editors with antiretroelement activity : [invited talk]. In: Natural genetic engineering and natural genome editing : GenConText research symposium, 3-6 July 2008, Salzburg, Austria : programme and abstracts of talks and poster presentation. [S. l.: s. n.], 2008. Str. 26. [COBISS.SI-ID 21837095]

52. AGUILAR, Renato S., PETERLIN, Matija Boris. APOBEC3 proteins and reverse transcription. Virus Research. [Print ed.]. 2008, vol. 134, issue 1/2, str. 74-85, ilustr. ISSN 0168-1702. [COBISS.SI-ID 29183449]

53. JIANG, Huimin, PETERLIN, Matija Boris. Differential chromatin looping regulates CD4 expression in immature thymocytes. Molecular and cellular biology. 2008, vol. 28, no. 3, str. 907-912, ilustr. ISSN 0270-7306. DOI: 10.1128/MCB.00909-07. [COBISS.SI-ID 29182937]

54. LENASSI, Metka, VAUPOTIČ, Tomaž, PLEMENITAŠ, Ana, PETERLIN, Matija Boris. HIV protein Nef is released from cells with exosomes. In: SPEARMAN, Paul (ed.), TELESNITSKY, Alice (ed.). Retroviruses : abstracts of papers presented at the 2008 meeting, May 19-May 24, 2008, Cold Spring Harbor, New York. New York: Cold Spring Harbor Laboratory, 2008. Str. 159. [COBISS.SI-ID 25478361]

55. SU, Mauree A., GIANG, Karen, ŽUMER, Kristina, JIANG, Huimin, OVEN, Irena, RINN, John L., DEVOSS, Jason J., JOHANNES, Kellsey P.A., LU, Wen, GARDNER, James, CHANG, Angela, BUBULYA, Paula, CHANG, Howard Y., PETERLIN, Matija Boris, ANDERSON, Mark S. Mechanisms of an autoimmunity syndrome in mice caused by a dominant mutation in Aire. The Journal of clinical investigation. 2008, vol. 118, no. 5, str. 1712-1726. ISSN 0021-9738. DOI: 10.1172/JCI34523. [COBISS.SI-ID 2285448]

56. PETERLIN, Matija Boris. Oče. In: BUKOŠEK, Vili (ed.), et al. Anton Peterlin 1908-1993 : življenje in delo = his life and work. Ljubljana: Slovenska akademija znanosti in umetnosti: Institut Jožef Stefan, 2008. Str. 427-435, ilustr. ISBN 978-961-6242-93-6. [COBISS.SI-ID 60406019]

57. BLAZEK, Dalibor, PETERLIN, Matija Boris. Tat-SIRT1 tango. Molecular cell. [Print ed.]. 2008, vol. 29, issue 5, str. 539-540. ISSN 1097-2765. DOI: 10.1016/j.molcel.2008.02.007. [COBISS.SI-ID 29183193]

58. LENASI, Tina, CONTRERAS, Xavier, PETERLIN, Matija Boris. Transcriptional interference antagonizes proviral gene expression to promote HIV latency. Cell host & microbe. 2008, vol. 4, issue 2, str. 123-133, ilustr. ISSN 1931-3128. DOI: 10.1016/j.chom.2008.05.016. [COBISS.SI-ID 29183705]

59. OVEN, Irena. Vloga proteina Aire pri podaljševanju prepisovanja genov v epitelijskih celicah timusne sredice : doktorsko delo = Role of Aire in transcriptional elongation of genes in medullary thymic epithelial cells : doctoral thesis. Ljubljana: [I. Oven], 2008. XI, 100 f., [10] f. pril., ilustr., tabele. [COBISS.SI-ID 239101696]

60. AGUIAR, Renato S., LOVŠIN, Nika, TANURI, Amilcar, PETERLIN, Matija Boris. VPR.A3A chimera inhibits HIV replication. The Journal of biological chemistry. 2008, vol. 283, no. 5, str. 2518-2525, ilustr. ISSN 0021-9258. [COBISS.SI-ID 21302823]

61. BARBORIČ, Matjaž, LENASI, Tina, CHEN, Hui, JOHANSEN, Eric, GUO, Su, PETERLIN, Matija Boris. 7SK snRNP/P-TEFb couples transcription elongation with alternative splicing and is essential for vertebrate development. Proceedings of the National Academy of Sciences of the United States of America. 2009, vol. 106, issue 19, str. 7798-7803, ilustr. ISSN 0027-8424. DOI: 10.1073/pnas.0903188106. [COBISS.SI-ID 29184217]

62. LOVŠIN, Nika, PETERLIN, Matija Boris. APOBEC3 proteins inhibit LINE-1 retrotransposition in the absence of ORF1p binding. In: Natural genetic engineering and natural genome editing : proceedings of the GenConText Research Symposium, 3-6 July 2008, Salzburg, Austria. New York: New York Academy of Sciences, 2009. Vol. 1178, no. 1, str. 268-275. Annals of the New York Academy of Sciences, vol. 1178, no. 1, 2009. ISSN 0077-8923. DOI: 10.1111/j.1749-6632.2009.05006.x. [COBISS.SI-ID 23252263]

63. KOHOUTEK, Jiři, LI, Qintong, BLAZEK, Dalibor, LUO, Zeping, JIANG, Huimin, PETERLIN, Matija Boris. Cyclin T2 is essential for mouse embryogenesis. Molecular and cellular biology. 2009, vol. 29, issue 12, str. 3280-3285, ilustr. ISSN 0270-7306. DOI: 10.1128/MCB.00172-09. [COBISS.SI-ID 29184729]

64. LOW, Audrey, OKEOMA, Chioma M., LOVŠIN, Nika, HERAS, M. de las, TAYLOR, T. H., PETERLIN, Matija Boris, ROSS, S. R., FAN, Hung Y. Enhanced replication and pathogenesis of Moloney murine leukemia virus in micedefective in the murine APOBEC3 gene. Virology. 2009, vol. 385, no. 2, str. 455-463. ISSN 0042-6822. https://www.sciencedirect.com/science/article/pii/S0042682208007903. [COBISS.SI-ID 22616871]

65. LI, Qintong, PETERLIN, Matija Boris. Genetic analysis of P-TEFb function via heterologous nucleic acid tethering systems. Methods. 2009, vol. 48, issue 4, str. 375-380, ilustr. ISSN 1046-2023. DOI: 10.1016/j.ymeth.2009.04.006. [COBISS.SI-ID 29184985]

66. LENASSI, Metka, CAGNEY, Gerard, LIAO, Maofu, VAUPOTIČ, Tomaž, CHENG, Yifan, KROGAN, Nevan J., PLEMENITAŠ, Ana, PETERLIN, Matija Boris. HIV protein Nef, secreted with exosomes, causes apopotosis of CD4+ T cells. In: GOLIČNIK, Marko (ed.), BAVEC, Aljoša (ed.). Book of abstracts. Joint Congress of the Slovenian Biochemical Society and the Genetic Society of Slovenia with International Participation, Otočec, September 20-23, 2009. Ljubljana: Slovenian Biochemical Society: Genetic Society of Slovenia, 2009. Str. 46. ISBN 978-961-91651-5-7. [COBISS.SI-ID 26030809]

67. OKEOMA, Chioma M., LOW, Audrey, BAILIS, Will, FAN, Hung Y., PETERLIN, Matija Boris, ROSS, Susan R. Induction of APOBEC3 in vivo causes increased restriction of retrovirus infection. Journal of virology. 2009, vol. 83, issue 8, str. 3486-3495, ilustr. ISSN 0022-538X. DOI: 10.1128/JVI.02347-08. [COBISS.SI-ID 29184473]

68. DA COSTA, Luciana Jesus, SANTOS, Adriana Lopes, MANDIC, Robert, SHAW, Karen, AGUIAR, Renato Santana, TANURI, Amilcar, LUCIW, Paul A., PETERLIN, Matija Boris. Interactions between SIVNef, SIVGagPol and Alix correlate with viral replication and progression to AIDS in rhesus macaques. Virology. 2009, vol. 394, issue 1, str. 47-56, ilustr. ISSN 0042-6822. DOI: 10.1016/j.virol.2009.08.024. [COBISS.SI-ID 29185497]

69. CHEN, Hui, CONTRERAS, Xavier, YAMAGUCHI, Yuki, HANDA, Hiroshi, PETERLIN, Matija Boris, GUO, Su. Repression of RNA polymerase II elongation in vivo is critically dependent on the C-terminus of Spt5. PloS one. 2009, vol. 4, issue 9, str. e6918. ISSN 1932-6203. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2735033/pdf/pone.0006918.pdf, DOI: 10.1371/journal.pone.0006918. [COBISS.SI-ID 29185241]

70. CONTRERAS, Xavier, SCHWENEKER, Marc, CHEN, Ching-Shih, MCCUNE, Joseph M, DEEKS, Steven G, MARTIN, Jeffrey, PETERLIN, Matija Boris. Suberoylanilide hydroxamic acid reactivates HIV from latently infected cells. The Journal of biological chemistry. 2009, vol. 284, issue 11, str. 6782-6789, ilustr. ISSN 0021-9258. DOI: 10.1074/jbc.M807898200. [COBISS.SI-ID 29183961]

71. LENASSI, Metka, CAGNEY, Gerard, LIAO, Maofu, VAUPOTIČ, Tomaž, BARTHOLOMEEUSEN, Koen, CHENG, Yifan, KROGAN, Nevan J., PLEMENITAŠ, Ana, PETERLIN, Matija Boris. HIV Nef is secreted in exosomes and triggers apoptosis in bystander CD4+ T cells. Traffic : the international journal of intracellular transport. Print ed. 2010, vol. 11, str. 110-122. ISSN 1398-9219. DOI: 10.1111/j.1600-0854.2009.01006.x. [COBISS.SI-ID 26290393]

72. PETERLIN, Matija Boris. Transcription elongation takes central stage : the P-TEFb connection. Cell cycle. 2010, vol. 9, issue 15, str. 2933-2934. ISSN 1551-4005. http://www.tandfonline.com/doi/pdf/10.4161/cc.9.15.12698?needAccess=true. [COBISS.SI-ID 29186009]

73. PETERLIN, Matija Boris. Biogenesis and function of Nef exosomes in HIV infection : The American Association of Immunologists, May 13-17, 2011, San Francisco. 2011. http://www.lshtm.ac.uk/eph/ncde/cancersurvival/workshop2011. [COBISS.SI-ID 29215705]

74. LENASI, Tina, PETERLIN, Matija Boris, BARBORIČ, Matjaž. Cap-binding protein complex links pre-mRNA capping to transcription elongationand alternative splicing through positive transcription elongation factor b (P-TEFb). The Journal of biological chemistry. 2011, vol. 286, issue 26, str. 22758-22768. ISSN 0021-9258. DOI: 10.1074/jbc.M111.235077. [COBISS.SI-ID 29173209]

75. BLAZEK, Dalibor, KOHOUTEK, Jiři, BARTHOLOMEEUSEN, Koen, JOHANSEN, Eric, HULINKOVA, Petra, LUO, Zeping, CIMERMANČIČ, Peter, ULE, Jernej, PETERLIN, Matija Boris. The Cyclin K/Cdk12 complex maintains genomic stability via regulation of expression of DNA damage response genes. Genes & development. 2011, vol. 25, issue 20, str. 2158-2172. ISSN 0890-9369. DOI: 10.1101/gad.16962311. [COBISS.SI-ID 29186265]

76. ŽUMER, Kristina. Mehanizem aktivacije prepisovanja tarčnih genov s transkripcijskim faktorjem AIRE v celicah sredice timusa : doktorsko delo. Ljubljana: [K. Žumer], 2011. XXI, 95, 12 str., ilustr. [COBISS.SI-ID 259788288]

77. LU, Chunye, CONTRERAS, Xavier, PETERLIN, Matija Boris. P bodies inhibit retrotransposition of endogenous intracisternal a particles. Journal of virology. 2011, vol. 85, issue 13, str. 6244-6251. ISSN 0022-538X. DOI: 10.1128/JVI.02517-10. [COBISS.SI-ID 29171929]

78. ŽUMER, Kristina, PLEMENITAŠ, Ana, SAKSELA, Kalle, PETERLIN, Matija Boris. Patient mutation in AIRE disrupts P-TEFb binding and target gene transcription. Nucleic acids research. 2011, vol. 39, issue 18, str. 7908-7919, ilustr. ISSN 0305-1048. DOI: 10.1093/nar/gkr527. [COBISS.SI-ID 28675545]

79. PETERLIN, Matija Boris, BROGIE, John E., PRICE, David H. 7SK snRNA : a noncoding RNA that plays a major role in regulating eukaryotic transcription. Wiley interdisciplinary reviews. RNA. 2012, vol. 3, iss. 1, str. 92-103. ISSN 1757-7004. DOI: 10.1002/wrna.106. [COBISS.SI-ID 29186521]

80. BARTHOLOMEEUSEN, Koen, XIANG, Yanhui, FUJINAGA, Koh, PETERLIN, Matija Boris. Bromodomain and extra-terminal (BET) bromodomain inhibition activate transcription via transient release of positive transcription elongation factor b (P-TEFb) from 7SK small nuclear ribonucleoprotein. The Journal of biological chemistry. 2012, vol. 287, iss. 43, str. 36609-36616. ISSN 0021-9258. DOI: 10.1074/jbc.M112.410746. [COBISS.SI-ID 30559449]

81. STANLEY, David J., BARTHOLOMEEUSEN, Koen, CROSBY, David C., PETERLIN, Matija Boris, et al. Inhibition of a NEDD8 cascade restores restriction of HIV by APOBEC3G. PLOS pathogens. 2012, vol. 8, iss. 2, str. 1-15. ISSN 1553-7366. http://www.plospathogens.org/article/info%3Adoi%2F10.1371%2Fjournal.ppat.1003085, DOI: 10.1371/journal.ppat.1003085. [COBISS.SI-ID 30558425]

82. LU, Chunye, LUO, Zeping, KROGAN, Nevan J., PETERLIN, Matija Boris. Moloney leukemia virus type 10 inhibits reverse transcription and retrotransposition of intracisternal a particles. Journal of virology. 2012, vol. 86, no. 19, str. 10517-10523. ISSN 0022-538X. DOI: 10.1128/JVI.00868-12. [COBISS.SI-ID 30560217]

83. FUJINAGA, Koh, BARBORIČ, Matjaž, LI, Qintong, LUO, Zeping, PETERLIN, Matija Boris, PRICE, David H. PKC phosphorylates HEXIM1 and regulates P-TEFb activity. Nucleic acids research. 2012, vol. 40, no. 18, str. 9160-9170, ilustr. ISSN 0305-1048. DOI: 10.1093/nar/gks682. [COBISS.SI-ID 30560729]

84. CONTRERAS, Xavier, MZOUGHI, Olfa, GASTON, Fabrice, PETERLIN, Matija Boris, BAHRAOUI, Elmostafa. Protein kinase C-delta regulates HIV-1 replication at an early post-entry step in macrophages. Retrovirology. Online ed. May 2012, vol. 9, iss. 37. ISSN 1742-4690. http://www.retrovirology.com/content/9/1/37, DOI: 10.1186/1742-4690-9-37. [COBISS.SI-ID 31069145]

85. PETERLIN, Matija Boris (research coworker), et al. Towards an HIV cure : a global scientific strategy. Nature reviews. Immunology. [Print ed.]. 2012, vol. 12, iss. 8, str. 607-614, ilustr. ISSN 1474-1733. DOI: 10.1038/nri3262. [COBISS.SI-ID 30558169]

86. ŽUMER, Kristina, LOW, Audrey, JIANG, Huimin, SAKSELA, Kalle, PETERLIN, Matija Boris. Unmodified histone H3K4 and DNA-dependent protein kinase recruit autoimmune regulator to target genes. Molecular and cellular biology. 2012, vol. 32, iss. 8, str. 1354-1362, ilustr. ISSN 0270-7306. [COBISS.SI-ID 30560985]

87. BARTHOLOMEEUSEN, Koen, FUJINAGA, Koh, XIANG, Yanhui, PETERLIN, Matija Boris. Histone deacetylase inhibitors (HDACis) that release the positive transcription elongation factor b (P-TEFb) from its inhibitory complex also activate HIV transcription. The Journal of biological chemistry. 17 May 2013, vol. 288, iss. 20, str. 14400-14407, ilustr. ISSN 0021-9258. DOI: 10.1074/jbc.M113.464834. [COBISS.SI-ID 30557913]

88. TAUBE, Ran, PETERLIN, Matija Boris. Lost in transcription : molecular mechanisms that control HIV latency. Viruses. Mar. 2013, vol. 5, iss. 3, str. 902-927. ISSN 1999-4915. http://www.mdpi.com/1999-4915/5/3/902, DOI: 10.3390/v5030902. [COBISS.SI-ID 31069401]

89. ŽUMER, Kristina, SAKSELA, Kalle, PETERLIN, Matija Boris. The mechanism of tissue-restricted antigen gene expression by AIRE. The journal of immunology. 2013, vol. 190, no. 6, str. 2479-2482. ISSN 0022-1767. DOI: 10.4049/jimmunol.1203210. [COBISS.SI-ID 30559961]

90. FUJINAGA, Koh, LUO, Zeping, PETERLIN, Matija Boris. Genetic analysis of the structure and function of 7SK small nuclear ribonucleoprotein (snRNP) in cells. The Journal of biological chemistry. Jul. 2014, vol. 289, no. 30, str. 21181-21190, ilustr. ISSN 0021-9258. http://www.jbc.org/content/289/30/21181.abstract?sid=071dd2bc-61e1-488a-9425-b4770c702715, DOI: 10.1074/jbc.M114.557751. [COBISS.SI-ID 31781337]

91. FERDIN, Jana, PUŽAR DOMINKUŠ, Pia, PLEMENITAŠ, Ana, PETERLIN, Matija Boris, LENASSI, Metka. HIV-infected and Nef-transfected microglia and astrocytes secrete exosomes carrying Nef. In: Abstracts. Third International Meeting of ISEV 2014, Rotterdam, The Netherlands, April 30th - May 3rd, 2014. [Järfälla: Co-Action Publishing], 2014. Str. 87. Journal of extracellular vesicles, vol. 3, suppl. 1 (2014). ISSN 2001-3078. http://www.journalofextracellularvesicles.net/index.php/jev/article/download/24214/33501. [COBISS.SI-ID 31613657]

92. JOSÉ, Diego Pandeló, BARTHOLOMEEUSEN, Koen, DA CUNHA, Rodrigo Delvecchio, MONTEIRO ABREU, Celina, GLIŃSKI, Jan, FERREIRA DA COSTA, Thais Barbizan, BACCHI RABAY, Ana Flávia Mello, PIANOWSKI FILHO, Luiz Francisco, DUDYCZ, Lech W., PETERLIN, Matija Boris, et al. Reactivation of latent HIV-1 by new semi-synthetic ingeol esters. Virology. 2014, vol. 462/463, str. 328-339, ilustr. ISSN 0042-6822. DOI: 10.1016/j.virol.2014.05.033. [COBISS.SI-ID 31783129]

93. LIU, Pingyang, XIANG, Yanhui, FUJINAGA, Koh, BARTHOLOMEEUSEN, Koen, NILSON, Kyle A., PRICE, David H..., PETERLIN, Matija Boris. Release of positive transcription elongation factor b (P-TEFb) from 7SK small nuclear ribonucleoprotein (snRNP) activates hexamethylene Bisacetamide-inducible protein (HEXIM1) transcription. The Journal of biological chemistry. Oct. 2014, vol. 289, no. 14, str. 9918-9925, ilustr. ISSN 0021-9258. http://www.jbc.org/content/289/14/9918.abstract?sid=cdd3792f-3856-4981-ba4d-4b3865c8bbda90/3/1829, DOI: 10.1074/jbc.M113.539015. [COBISS.SI-ID 31781081]

94. PAK, Vladimir, EIFLER, Tristan T., JÄGER, Stefanie, KROGAN, Nevan J., FUJINAGA, Koh, PETERLIN, Matija Boris. CDK11 in TREX/THOC regulates HIV mRNA 3' end processing. Cell host & microbe. Nov. 2015, vol. 18, iss. 5, str. 560-570, ilustr. ISSN 1931-3128. http://www.sciencedirect.com/science/article/pii/S1931312815004229, DOI: 10.1016/j.chom.2015.10.012. [COBISS.SI-ID 32539353]

95. EIFLER, Tristan T., SHAO, Wei, BARTHOLOMEEUSEN, Koen, FUJINAGA, Koh, JÄGER, Stefanie, JOHNSON, Jeff R., LUO, Zeping, KROGAN, Nevan J., PETERLIN, Matija Boris. Cyclin-dependent kinase 12 increases 3' end processing of growth factor-induced c-FOS transcripts. Molecular and cellular biology. Jan. 2015, vol. 35, iss. 2, str. 468-478, ilustr. ISSN 0270-7306. DOI: 10.1128/MCB.01157-14. [COBISS.SI-ID 31781593]

96. FERDIN, Jana, PLEMENITAŠ, Ana, PETERLIN, Matija Boris, LENASSI, Metka. Exosomes containing protein Nef are released from microglia and astrocyte cells infected with HIV virus. In: KOS, Janko (ed.), POKLAR ULRIH, Nataša (ed.). Molecules of life : book of abstracts. FEBS3+ Meeting and 11th Meeting of the Slovenian Biochemical Society, September 16-19, 2015, Portorož, Slovenia. Ljubljana: Slovenian Biochemical Society, 2015. Str. 251. ISBN 978-961-93879-0-0. [COBISS.SI-ID 32454873]

97. PUŽAR DOMINKUŠ, Pia, KEJŽAR, Anja, PLEMENITAŠ, Ana, PETERLIN, Matija Boris, LENASSI, Metka. HIV protein Nef is secreted via exosomes from Nef-transfected human microglia. In: KOS, Janko (ed.), POKLAR ULRIH, Nataša (ed.). Molecules of life : book of abstracts. FEBS3+ Meeting and 11th Meeting of the Slovenian Biochemical Society, September 16-19, 2015, Portorož, Slovenia. Ljubljana: Slovenian Biochemical Society, 2015. Str. 272. ISBN 978-961-93879-0-0. [COBISS.SI-ID 32186841]

98. FERDIN, Jana, PLEMENITAŠ, Ana, PETERLIN, Matija Boris, LENASSI, Metka. HIV-infected microglia and astrocyte cells secrete exosomes containing Nef. Journal of extracellular vesicles. 2015, vol. 4, str. 179. ISSN 2001-3078. http://www.journalofextracellularvesicles.net/index.php/jev/article/view/27783. [COBISS.SI-ID 32459225]

99. DARCIS, Gilles, KULA, Anna, BOUCHAT, Sophie, FUJINAGA, Koh, CORAZZA, Francis, AIT-AMMAR, Amina, DELACOURT, Nadège, MELARD, Adeline, KABEYA, Kabamba, PETERLIN, Matija Boris, et al. An in-depth comparison of latency-reversing agent combinations in various in vitro and ex vivo HIV-1 latency models identified bryostatin-1+JQ1 and ingenol-B+JQ1 to potently reactivate viral gene expression. PLOS pathogens. Jul. 2015, vol. 11, no. 7, str. 1-36. ISSN 1553-7374. http://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1005063, DOI: 10.1371/journal.ppat.1005063. [COBISS.SI-ID 32539097]

100. PUŽAR DOMINKUŠ, Pia, KEJŽAR, Anja, PLEMENITAŠ, Ana, PETERLIN, Matija Boris, LENASSI, Metka. Nef-transfected human microglia secrete Nef-containing exosomes. Journal of extracellular vesicles. 2015, vol. 4, str. 179. ISSN 2001-3078. http://www.journalofextracellularvesicles.net/index.php/jev/article/view/27783. [COBISS.SI-ID 32459481]

101. FERDIN, Jana, PUŽAR DOMINKUŠ, Pia, GORIČAR, Katja, DOLŽAN, Vita, PLEMENITAŠ, Ana, DEEKS, Steven G, PETERLIN, Matija Boris, LENASSI, Metka. Plasma Nef-exosomes : putative biomarkers for active reservoirs in ART treated HIV infected patients. In: KOS, Janko (ed.), POKLAR ULRIH, Nataša (ed.). Molecules of life : book of abstracts. FEBS3+ Meeting and 11th Meeting of the Slovenian Biochemical Society, September 16-19, 2015, Portorož, Slovenia. Ljubljana: Slovenian Biochemical Society, 2015. Str. 262. ISBN 978-961-93879-0-0. [COBISS.SI-ID 32455129]

102. FUJINAGA, Koh, LUO, Zeping, SCHAUFELE, Fred, PETERLIN, Matija Boris. Visualization of positive transcription elongation factor b (P-TEFb) activation in living cells. The Journal of biological chemistry. Jan. 2015, vol. 290, no. 3, str. 1829-1836, ilustr. ISSN 0021-9258. http://www.jbc.org/content/290/3/1829, DOI: 10.1074/jbc.M114.605816. [COBISS.SI-ID 31780825]

103. BLAZEK, Dalibor, TEQUE, Fernando, MACKEWICZ, Carl, PETERLIN, Matija Boris, LEVY, Jay A. The CD8+ cell non-cytotoxic antiviral response affects RNA polymerase II-mediated human immunodeficiency virus transcription in infected CD4+ cells. Journal of General Virology. Jan. 2016, vol. 97, no. 1, str. 220-224, ilustr. ISSN 0022-1317. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4772706/. [COBISS.SI-ID 33121497]

104. FERDIN, Jana, GORIČAR, Katja, DOLŽAN, Vita, PLEMENITAŠ, Ana, DEEKS, Steven G, PETERLIN, Matija Boris, LENASSI, Metka. Detection of Nef-exosomes in plasma of aviremic HIV-1 infected patients. In: Molecular life of stem cells [2016] : post-transcriptional regulation and (epi)genomic engineering in stem cells : [abstract book]. 1st International Conference Molecular Life of Stem Cells : post-transcriptional regulation and (epi)genomic engineering in stem cells, Ljubljana 29th September - 1st October 2016. [S. l.: s. n., 2016?]. Str. 54-55. [COBISS.SI-ID 32844761]

105. CARY, Daniele C., FUJINAGA, Koh, PETERLIN, Matija Boris. Euphorbia kansui reactivates latent HIV. PloS one. Dec. 2016, vol. 11, iss. 12, str. 1-18. ISSN 1932-6203. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0168027, DOI: 10.1371/journal.pone.0168027. [COBISS.SI-ID 33120217]

106. FERDIN, Jana, GORIČAR, Katja, DOLŽAN, Vita, PLEMENITAŠ, Ana, DEEKS, Steven G, PETERLIN, Matija Boris, LENASSI, Metka. Exosomes carrying Nef are present in plasma of HIV infected patients with undetected viral load. In: Exosomes/microvesicles : novel mechanisms of cell-cell communication. [Keystone: s. n., 2016]. Str. 43. [COBISS.SI-ID 32716761]

107. SHAO, Wei, ŽUMER, Kristina, FUJINAGA, Koh, PETERLIN, Matija Boris. FBXO3 protein promotes ubiquitylation and transcriptional activity of AIRE (autoimmune regulator). The Journal of biological chemistry. Aug. 2016, vol. 291, iss. 34, str. 17953-17963, ilustr. ISSN 0021-9258. http://www.jbc.org/content/291/34/17953.full.pdf, DOI: 10.1074/jbc.M116.724401. [COBISS.SI-ID 33120473]

108. PUŽAR DOMINKUŠ, Pia, LOBODA, Jure, KEJŽAR, Anja, RESNIK, Nataša, SITAR, Simona, VERANIČ, Peter, ŽAGAR, Ema, PLEMENITAŠ, Ana, PETERLIN, Matija Boris, LENASSI, Metka. Human microglia release distinct populations of extracellular vesicles, depending on the stimulus. In: Molecular life of stem cells [2016] : post-transcriptional regulation and (epi)genomic engineering in stem cells : [abstract book]. 1st International Conference Molecular Life of Stem Cells : post-transcriptional regulation and (epi)genomic engineering in stem cells, Ljubljana 29th September - 1st October 2016. [S. l.: s. n., 2016?]. Str. 53-54. [COBISS.SI-ID 32844505]

109. CARY, Daniele C., FUJINAGA, Koh, PETERLIN, Matija Boris. Molecular mechanisms of HIV latency. The Journal of clinical investigation. Feb. 2016, vol. 126, no. 2, str. 448-454. ISSN 0021-9738. DOI: 10.1172/JCI80565. [COBISS.SI-ID 32544217]

110. PUŽAR DOMINKUŠ, Pia, FERDIN, Jana, LOBODA, Jure, STENOVEC, Matjaž, SITAR, Simona, TRKOV, Saša, LASIČ, Eva, PLEMENITAŠ, Ana, PETERLIN, Matija Boris, ŽAGAR, Ema, KREFT, Marko, LENASSI, Metka. Nef-expressing human microglia contribute to Nef-exosome pool in the brain. In: Exosomes/microvesicles : novel mechanisms of cell-cell communication. [Keystone: s. n., 2016]. Str. 50. [COBISS.SI-ID 32717017]

111. FERDIN, Jana, GORIČAR, Katja, DOLŽAN, Vita, PLEMENITAŠ, Ana, DEEKS, Steven G, PETERLIN, Matija Boris, LENASSI, Metka. Plasma of HIV infected patients with undetected viral load contains exosomes with viral protein Nef. In: DOLŽAN, Vita (ed.), GORIČAR, Katja (ed.). Book of abstracts. Summer School Genomic Medicine - Bridging Research and the Clinic, 3.-7. May 2016, Portorož. Ljubljana: Faculty of Medicine, 2016. Str. 77. ISBN 978-961-267-108-2. [COBISS.SI-ID 32617945]

112. TAN, Justin L., FOGLEY, Rachel D., FLYNN, Ryan A., ABLAIN, Julien, YANG, Song, SAINT-ANDRÉ, Violaine, FAN, Zi Peng, DO, Brian T., LAGA, Alvaro C., PETERLIN, Matija Boris, et al. Stress from nucleotide depletion activates the transcriptional regulator HEXIM1 to suppress melanoma. Molecular cell. [Print ed.]. Apr. 2016, vol. 62, iss. 1, str. 34-46, ilustr. ISSN 1097-2765. http://www.sciencedirect.com/science/article/pii/S1097276516002239, DOI: 10.1016/j.molcel.2016.03.013. [COBISS.SI-ID 33120729]

113. CARY, Daniele C., PETERLIN, Matija Boris. Targeting the latent reservoir to achieve functional HIV cure : [version 1; referees: 3 approved]. F1000Research. 2016, vol. 5, str. 1-8. ISSN 2046-1402. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4882755/pdf/f1000research-5-8724.pdf, DOI: 10.12688/f1000research.8109.1. [COBISS.SI-ID 33121241]

114. CUNHA, Marcela Sabino, LIMA SAMPAIO, Thatiane, PETERLIN, Matija Boris, DA COSTA, Luciana Jesus. A truncated Nef peptide from SIVcpz inhibits the production of HIV-1 infectious progeny. Viruses. 2016, vol. 8, iss. 7, str. 1-18. ISSN 1999-4915. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4974524/pdf/viruses-08-00189.pdf, DOI: 10.3390/v8070189. [COBISS.SI-ID 33120985]

115. PUŽAR DOMINKUŠ, Pia, STENOVEC, Matjaž, LOBODA, Jure, SITAR, Simona, RESNIK, Nataša, TRKOV, Saša, LASIČ, Eva, PLEMENITAŠ, Ana, PETERLIN, Matija Boris, VERANIČ, Peter, KREFT, Marko, ŽAGAR, Ema, LENASSI, Metka. Different pathological stimuli induce the release of distinct extracellular vesicles from human microglia. In: GORIČAR, Katja (ed.), HUDLER, Petra (ed.). Book of abstracts = Zbornik povzetkov. 12th Meeting of the Slovenian Biochemical Society with International Participation = 12. srečanje Slovenskega biokemijskega društva z mednarodno udeležbo, Bled 20 - 23 september 2017. Ljubljana: Slovenian Biochemical Society, 2017. Str. 156. ISBN 978-961-93879-4-8. [COBISS.SI-ID 33462233]

116. PUŽAR DOMINKUŠ, Pia, STENOVEC, Matjaž, LOBODA, Jure, SITAR, Simona, RESNIK, Nataša, TRKOV, Saša, LASIČ, Eva, PLEMENITAŠ, Ana, PETERLIN, Matija Boris, VERANIČ, Peter, KREFT, Marko, ŽAGAR, Ema, LENASSI, Metka. Microglia release distinct extracellular vesicle populations in response to different pathological stimuli. Journal of extracellular vesicles. 2017, vol. 6, suppl. 1, str. 6. ISSN 2001-3078. http://www.tandfonline.com/doi/full/10.1080/20013078.2017.1310414. [COBISS.SI-ID 33286361]

117. PUŽAR DOMINKUŠ, Pia, FERDIN, Jana, PLEMENITAŠ, Ana, PETERLIN, Matija Boris, PETERLIN, Matija Boris, LENASSI, Metka. Nef is secreted in exosomes from Nef.GFP-expressing and HIV-1-infected human astrocytes. Journal of neurovirology. Oct. 2017, vol. 23, no. 5, str. 713-724, ilustr. ISSN 1355-0284. https://link.springer.com/article/10.1007%2Fs13365-017-0552-x, DOI: 10.1007/s13365-017-0552-x. [COBISS.SI-ID 33351641]

118. FERDIN, Jana, GORIČAR, Katja, DOLŽAN, Vita, PLEMENITAŠ, Ana, MARTIN, Jeffrey, PETERLIN, Matija Boris, DEEKS, Steven G, LENASSI, Metka. Nef-exosomes as putative biomarkers for inadequate treatment regimen of HIV-1 infected individuals. Journal of extracellular vesicles. 2017, vol. 6, suppl. 1, str. 59. ISSN 2001-3078. http://www.tandfonline.com/doi/full/10.1080/20013078.2017.1310414. [COBISS.SI-ID 33286617]

119. HLADNIK, Anžej, FERDIN, Jana, GORIČAR, Katja, DEEKS, Steven G, PETERLIN, Matija Boris, PLEMENITAŠ, Ana, DOLŽAN, Vita, LENASSI, Metka. Trans-activation response element RNA is detectable in the plasma of a subset of aviremic HIV-1-infected patients. Acta chimica slovenica. [Tiskana izd.]. 2017, vol. 64, no. 3, str. 530-536, ilustr. ISSN 1318-0207. https://journals.matheo.si/index.php/ACSi/article/view/2863, Digitalna knjižnica Slovenije - dLib.si, DOI: 10.17344/acsi.2016.2863. [COBISS.SI-ID 33286873]

120. HLADNIK, Anžej, FERDIN, Jana, GORIČAR, Katja, DEEKS, Steven G, PETERLIN, Matija Boris, PLEMENITAŠ, Ana, DOLŽAN, Vita, LENASSI, Metka. Trans-activation response element RNA is detectable in the plasma of a subset of aviremic HIV-1-infected patients. In: KLJUN, Jakob (ed.), GABER, Aljaž (ed.). Book of abstracts. Scientific Conference for Young Researchers, 19. 9. 2017. Ljubljana: Fakulteta za kemijo in kemijsko tehnologijo, 2017. Str. 33. ISBN 978-961-6756-83-9. [COBISS.SI-ID 33419225]

121. HLADNIK, Anžej, FERDIN, Jana, GORIČAR, Katja, DEEKS, Steven G, PETERLIN, Matija Boris, PLEMENITAŠ, Ana, DOLŽAN, Vita, LENASSI, Metka. Trans-activation response element RNA is detectable in the plasma of a subset of aviremic HIV-1-infected patients. In: GORIČAR, Katja (ed.), HUDLER, Petra (ed.). Book of abstracts = Zbornik povzetkov. 12th Meeting of the Slovenian Biochemical Society with International Participation = 12. srečanje Slovenskega biokemijskega društva z mednarodno udeležbo, Bled 20 - 23 september 2017. Ljubljana: Slovenian Biochemical Society, 2017. Str. 143. ISBN 978-961-93879-4-8. [COBISS.SI-ID 33419481]

122. FERDIN, Jana, GORIČAR, Katja, DOLŽAN, Vita, PLEMENITAŠ, Ana, MARTIN, Jeffrey, PETERLIN, Matija Boris, DEEKS, Steven G, LENASSI, Metka. Viral protein Nef and human miRNAs are putative plasma biomarkers of HIV-a reservoirs in infected individuals with undetectable viral RNA. In: GORIČAR, Katja (ed.), HUDLER, Petra (ed.). Book of abstracts = Zbornik povzetkov. 12th Meeting of the Slovenian Biochemical Society with International Participation = 12. srečanje Slovenskega biokemijskega društva z mednarodno udeležbo, Bled 20 - 23 september 2017. Ljubljana: Slovenian Biochemical Society, 2017. Str. 69. ISBN 978-961-93879-4-8. [COBISS.SI-ID 33461721]

123. FERDIN, Jana, GORIČAR, Katja, ROTTER, Ana, HLADNIK, Anžej, PLEMENITAŠ, Ana, DOLŽAN, Vita, MARTIN, Jeffrey, PETERLIN, Matija Boris, DEEKS, Steven G, LENASSI, Metka. Evaluation of plasma extracellular vesicle proteins and miRNAs as biomarkers of leaky HIV reservoirs in aviremic adults. In: Taste of genomics : abstracts. 13th CFGBC Symposium, Ljubljana, 20-21 June 2018. Ljubljana: Faculty of Medicine, 2018. http://cfgbc.mf.uni-lj.si/events/seminars/2018cfgbcsym13/abstracts/lectureAbstract_MLenassi_01.html. [COBISS.SI-ID 33844185]

124. PUŽAR DOMINKUŠ, Pia, STENOVEC, Matjaž, FERDIN, Jana, SITAR, Simona, TRKOV, Saša, LASIČ, Eva, PLEMENITAŠ, Ana, PETERLIN, Matija Boris, ŽAGAR, Ema, KREFT, Marko, LENASSI, Metka. Microglia respond to HIV-1 protein Nef expression by releasing distinct extracellular vesicle population. Journal of extracellular vesicles. 2018, vol. 7, suppl. 1, str. 197. ISSN 2001-3078. https://www.tandfonline.com/doi/full/10.1080/20013078.2018.1461450. [COBISS.SI-ID 33844697]

125. FERDIN, Jana, GORIČAR, Katja, DOLŽAN, Vita, PLEMENITAŠ, Ana, MARTIN, Jeffrey, PETERLIN, Matija Boris, DEEKS, Steven G, LENASSI, Metka. Viral protein Nef is detected in plasma of half of HIV-infected adults with undetectable plasma HIV RNA. PloS one. Jan. 2018, vol. 13, iss. 1, str. 1-10, ilustr. ISSN 1932-6203. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5783402/pdf/pone.0191613.pdf, Repozitorij Univerze v Ljubljani – RUL, DOI: 10.1371/journal.pone.0191613. [COBISS.SI-ID 33608665]
project: Z3-7198, J3-5499, P1-0170; funder: Slovenian Research Agency
project: P30 AI027763, R24 AI067039; funder: Gladstone Institute of Virology & Immunology CFAR
project: AI096109, A127966; funder: Delaney AIDS Research Enterprise
project: 109301; funder: amfAR Institute for HIV Cure Research
project: R01 AI49104; funder: National Institutes of Health

Matija Boris Peterlin

Personal bibliography for the period 1996-2018

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