dr. Tomaž Curk [23399]

1. CASTELLO, Alfredo, FRESE, Christian K., FISCHER, Bernd, JÄRVELIN, Aino I., HOROS, Rastislav, ALLEAUME, Anne-Marie, FÖHR, Sophia, CURK, Tomaž, KRIJGSVELD, Jeroen, HENTZE, Matthias W. Identification of RNA-binding domains of RNA-binding proteins in cultured cells on a system-wide scale with RBDmap. Nature protocols. Dec. 2017, vol. 12, no. 12, str. 2447-2464, ilustr. ISSN 1754-2189. http://www.nature.com/articles/nprot.2017.106, DOI: 10.1038/nprot.2017.106. [COBISS.SI-ID 1537666243]

2. STRAŽAR, Martin, ŽITNIK, Marinka, ZUPAN, Blaž, ULE, Jernej, CURK, Tomaž. Orthogonal matrix factorization enables integrative analysis of multiple RNA binding proteins. Bioinformatics. [Print ed.]. May 2016, vol. 32, no. 10, str. 1527-1535, ilustr. ISSN 1367-4803. http://bioinformatics.oxfordjournals.org/content/32/10/1527.full.pdf+html, DOI: 10.1093/bioinformatics/btw003. [COBISS.SI-ID 1537001923]

3. CASTELLO, Alfredo, FISCHER, Bernd, FRESE, Christian K., HOROS, Rastislav, ALLEAUME, Anne-Marie, FÖHR, Sophia, CURK, Tomaž, KRIJGSVELD, Jeroen, HENTZE, Matthias W. Comprehensive identification of RNA-binding domains in human cells. Molecular cell. [Print ed.]. Aug. 2016, vol. 63, no. 4, str. 696-710, ilustr. ISSN 1097-2765. http://www.cell.com/molecular-cell/pdf/S1097-2765(16)30287-8.pdf, DOI: 10.1016/j.molcel.2016.06.029. [COBISS.SI-ID 1537238979]

4. SIBLEY, Christopher R., EMMETT, Warren, BLAZQUEZ, Lorea, FARO, Ana, HABERMAN, Nejc, BRIESE, Michael, TRABZUNI, Daniah, RYTEN, Mina, WEALE, Michael E., HARDY, John, MODIC, Miha, CURK, Tomaž, WILSON, Stephen W., PLAGNOL, Vincent, ULE, Jernej. Recursive splicing in long vertebrate genes. Nature : the international weekly journal of science. [Print ed.]. May 2015, vol. 521, no. 7552, str. 371-375, [15] str. pril., graf. prikazi. ISSN 0028-0836. http://www.nature.com/nature/journal/v521/n7552/full/nature14466.html, DOI: 10.1038/nature14466. [COBISS.SI-ID 1536358339]

5. HAUER, Christian, CURK, Tomaž, ANDERS, Simon, SCHWARZL, Thomas, ALLEAUME, Anne-Marie, SIEBER, Jana, HOLLERER, Ina, BHUVANAGIRI, Madhuri, HUBER, Wolfgang, HENTZE, Matthias W., KULOZIK, Andreas E. Improved binding site assignment by high-resolution mapping of RNA-protein interactions using iCLIP. Nature communications. Aug. 2015, vol. 6, str. 1-13, ilustr. ISSN 2041-1723. http://www.nature.com/ncomms/2015/150811/ncomms8921/full/ncomms8921.html, DOI: 10.1038/ncomms8921. [COBISS.SI-ID 1536523459]

6. DEMŠAR, Janez, CURK, Tomaž, ERJAVEC, Aleš, GORUP, Črtomir, HOČEVAR, Tomaž, MILUTINOVIĆ, Mitar, MOŽINA, Martin, POLAJNAR, Matija, TOPLAK, Marko, STARIČ, Anže, ŠTAJDOHAR, Miha, UMEK, Lan, ŽAGAR, Lan, ŽBONTAR, Jure, ŽITNIK, Marinka, ZUPAN, Blaž. Orange : data mining toolbox in Python. Journal of machine learning research. [Print ed.]. Aug. 2013, vol. 14, str. 2349-2353. ISSN 1532-4435. http://jmlr.org/papers/volume14/demsar13a/demsar13a.pdf, http://eprints.fri.uni-lj.si/2267/. [COBISS.SI-ID 10118740]

7. TOLLERVEY, James R., CURK, Tomaž, ROGELJ, Boris, BRIESE, Michael, CEREDA, Matteo, KAYIKCI, Melis, KÖNIG, Julian, HORTOBÁGYI, Tibor, NISHIMURA, Agnes L., ŽUPUNSKI, Vera, PATANI, Rickie, CHANDRAN, Siddharthan, ROT, Gregor, ZUPAN, Blaž, SHAW, Christopher E., ULE, Jernej. Characterizing the RNA targets and position - dependent splicing regulation by TDP-43. Nature neuroscience. April 2011, vol. 14, no. 4, str. 452-459, graf. prikazi. ISSN 1097-6256. http://www.nature.com/neuro/journal/v14/n4/pdf/nn.2778.pdf, http://eprints.fri.uni-lj.si/1478/. [COBISS.SI-ID 8278100]

8. KÖNIG, Julian, ZARNACK, Kathi, ROT, Gregor, CURK, Tomaž, KAYIKCI, Melis, ZUPAN, Blaž, TURNER, Daniel J., LUSCOMBE, Nicholas M., ULE, Jernej. ICLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution. Nature structural & molecular biology. Jul. 2010, vol. 17, no. 7, str. 909-916, ilustr. ISSN 1545-9993. http://www.nature.com/nsmb/journal/v17/n7/full/nsmb.1838.html. [COBISS.SI-ID 7800916]

9. ROT, Gregor, PARIKH, Anup, CURK, Tomaž, KUSPA, Adam, SHAULSKY, Gad, ZUPAN, Blaž. DictyExpress : a dictyostelium discoideum gene expression database with an explorative data analysis web-based interface. BMC bioinformatics. Aug. 2009, vol. 10, str. 1-18. ISSN 1471-2105. http://www.biomedcentral.com/content/pdf/1471-2105-10-265.pdf, http://eprints.fri.uni-lj.si/899/. [COBISS.SI-ID 7219028]

10. CURK, Tomaž, DEMŠAR, Janez, XU, Qikai, LEBAN, Gregor, PETROVIČ, Uroš, BRATKO, Ivan, SHAULSKY, Gad, ZUPAN, Blaž. Microarray data mining with visual programming. Bioinformatics. [Print ed.]. 2005, vol. 21, no. 3, str. 396-398, ilustr. ISSN 1367-4803. http://eprints.fri.uni-lj.si/1591/. [COBISS.SI-ID 4563284]