1. PUNGERČAR, Jože, KRIŽAJ, Igor, LIANG, Ning-Sheng, GUBENŠEK, Franc. An aromatic, but not a basic, residue is involved in the toxicity of group-II phospholipase ▫$A_2$▫ neurotoxins. Biochemical journal. 1999, vol. 341, str. 139-145. ISSN 0264-6021. [COBISS.SI-ID 14210343]

2. ANDERLUH, Gregor, BARLIČ, Ariana, PODLESEK, Zdravko, MAČEK, Peter, PUNGERČAR, Jože, GUBENŠEK, Franc, ZECCHINI, Maria Lucia, DALLA SERRA, Mauro, MENESTRINA, Gianfranco. Cysteine-scanning mutagenesis of an eukaryotic pore-forming toxin from sea anemone : topology in lipid membranes. European journal of biochemistry. 1999, vol. 263, str. 128-136. ISSN 0014-2956. [COBISS.SI-ID 14218279]

3. PUNGERČAR, Jože, VUČEMILO, Nataša, FAURE, Grazyna, BON, Cassian, VERHEIJ, Hubertus M., GUBENŠEK, Franc, KRIŽAJ, Igor. Ammodytin L, an inactive phospholipase ▫$A_2$▫ homologue with myotoxicity in mice binds to the presynaptic acceptor of the ▫$\beta$▫-neurotoxic ammodytoxin C in torpedo : an indicator for a phospholipase ▫$A_2$▫ activity-independent mechanism of action of ▫$\beta$▫-neurotoxins in fish?. Biochemical and biophysical research communications. 1998, vol. 244, str. 514-518. ISSN 0006-291X. [COBISS.SI-ID 13134375]

4. GUNČAR, Gregor, PODOBNIK, Marjetka, PUNGERČAR, Jože, ŠTRUKELJ, Borut, TURK, Vito, TURK, Dušan. Crystal structure of porcine cathepsin H determined at 2.1 Å resolution: location of the mini-chain C-terminal carboxyl group defines cathepsin H aminopeptidase function. Structure. [Print ed.]. 1998, vol. 6, no. 1, str. 51-61, barvne ilustracije. ISSN 0969-2126. [COBISS.SI-ID 174961]

5. PUNGERČAR, Jože, ŠTRUKELJ, Borut, KOPITAR, Gregor, RENKO, Metka, LENARČIČ, Brigita, GUBENŠEK, Franc, TURK, Vito. Molecular cloning of a putative homolog of proline/arginine-rich antibacterial peptides from porcine bone marrow. FEBS letters. [Print ed.]. 1993, vol. 336, str. 284-288. ISSN 0014-5793. [COBISS.SI-ID 6014503]

6. PUNGERČAR, Jože, KORDIŠ, Dušan, ŠTRUKELJ, Borut, LIANG, N. S., GUBENŠEK, Franc. Cloning and nucleotide sequence of a cDNA encoding ammodytoxin A, the most toxic phospholipase A2 from the venom of long-nosed viper (vipera ammodytes). Toxicon. [Print ed.]. 1991, vol. 29, str. 269-273. ISSN 0041-0101. [COBISS.SI-ID 5130023]

7. PUNGERČAR, Jože, KORDIŠ, Dušan, JERALA, Roman, TRSTENJAK-PREBANDA, Mojca, DOLINAR, Marko, ČURIN-ŠERBEC, Vladka, KOMEL, Radovan, GUBENŠEK, Franc. Amino acid sequence of ammodytoxin C as deduced from cDNA. Nucleic acids research. 1989, vol. 17, str. 4367. ISSN 0305-1048. [COBISS.SI-ID 7887399]

8. GUBENŠEK, Franc, KRIŽAJ, Igor, PUNGERČAR, Jože. Monomeric phospholipase A2 neurotoxins. V: KINI, R. Manjunatha (ur.). Venom phospholipase A[sub]2 enzymes : structure, function and mechanism. Chichester ... [etc.]: John Wiley, cop. 1997. Str. 245-268. ISBN 0-471-96189-2. [COBISS.SI-ID 12557607]

9. PUNGERČAR, Jože, ŠTRUKELJ, Borut, GUBENŠEK, Franc, TURK, Vito, KREGAR, Igor. Sekvenca cDNA za ovčji preprokimozin : patent : SI 9010479 (A), 1997-12-31. Ljubljana: Urad RS za intelektualno lastnino, 1997. 13 str., ilustr. [COBISS.SI-ID 8767271]
patentna družina: Št. prijave SI 19900010479, 1990-03-09

10. GROM, Marjeta, MATKO, Anica, REPŠE, Jože, PUNGERČAR, Jože, POKORNY, Miroslav. Preparat Na-soli salinomicina "feed grade" kvalitete in postopek za njegovo pridobivanje iz fermentacijske brozge Streptomyces albus : YU patent št. 45496, SI patent št. 8810737. 1988. [COBISS.SI-ID 8715815]