dr. Andrej Perdih [25493]

1. PAVLIN, Matic, HERLAH, Barbara, VALJAVEC, Katja, PERDIH, Andrej. Unveiling the interdomain dynamics of type II DNA topoisomerase through all-atom simulations : implications for understanding its catalytic cycle. Computational and Structural Biotechnology Journal. 2023, vol. 21, str. 3746-3759, ilustr. ISSN 2001-0370. https://www.sciencedirect.com/science/article/pii/S2001037023002593, DOI: 10.1016/j.csbj.2023.07.019. [COBISS.SI-ID 160446211]

2. OGRIZEK, Mitja, JANEŽIČ, Matej, VALJAVEC, Katja, PERDIH, Andrej. Catalytic mechanism of ATP hydrolysis in the ATPase domain of human DNA topoisomerase ▫$II\alpha$▫. Journal of chemical information and modeling. [Print ed.]. 10 Aug. 2022, vol. 62, iss. 16, str. 3896–3909, ilustr. ISSN 1549-9596. https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.2c00303, Repozitorij Univerze v Ljubljani – RUL. [COBISS.SI-ID 120437251]

3. PRAŠNIKAR, Eva, PERDIH, Andrej, BORIŠEK, Jure. All-atom simulations reveal a key interaction network in the HLA-E/NKG2A/CD94 immune complex fine-tuned by the nonameric peptide. Journal of chemical information and modeling. [Print ed.]. 26 Jul. 2021, vol. 61, iss. 7, str. 3593-3603, ilustr. ISSN 1549-9596. https://pubs.acs.org/doi/abs/10.1021/acs.jcim.1c00414, DOI: 10.1021/acs.jcim.1c00414. [COBISS.SI-ID 69318915]

4. BERGANT LOBODA, Kaja, JANEŽIČ, Matej, ŠTAMPAR, Martina, ŽEGURA, Bojana, FILIPIČ, Metka, PERDIH, Andrej. Substituted 4,5'-bithiazoles as catalytic inhibitors of human DNA topoisomerase II ▫$/alpha$▫. Journal of chemical information and modeling. [Print ed.]. 27 Jul. 2020, vol. 60, iss. 7, str. 3662-3678, ilustr. ISSN 1549-9596. https://pubs.acs.org/doi/10.1021/acs.jcim.0c00202, http://dirros.openscience.si/IzpisGradiva.php?id=12764&lang=slv, DiRROS - Digitalni repozitorij raziskovalnih organizacij Slovenije, DOI: 10.1021/acs.jcim.0c00202. [COBISS.SI-ID 18365443]

5. BORIŠEK, Jure, PINTAR, Sara, OGRIZEK, Mitja, TURK, Dušan, PERDIH, Andrej, NOVIČ, Marjana. A water-assisted catalytic mechanism in glycoside hydrolases demonstrated on the Staphylococcus aureus autolysin E. ACS catalysis. 2018, vol. 8, no. 5, str. 4334-4345. ISSN 2155-5435. DOI: 10.1021/acscatal.8b01064. [COBISS.SI-ID 31330087]

6. PERDIH, Andrej, HRAST, Martina, BARRETEAU, Hélène, GOBEC, Stanislav, WOLBER, Gerhard, ŠOLMAJER, Tomaž. Benzene-1,3-dicarboxylic acid 2,5-dimethylpyrrole derivatives as multiple inhibitors of bacterial Mur ligases (MurC-MurF). Bioorganic & Medicinal Chemistry. [Print ed.]. Aug. 2014, vol. 22, iss.15, str. 4124-4134, ilustr. ISSN 0968-0896. https://www.sciencedirect.com/science/article/abs/pii/S0968089614004179?via%3Dihub, DOI: 10.1016/j.bmc.2014.05.058. [COBISS.SI-ID 5493018]

7. PERDIH, Andrej, HRAST, Martina, BARRETEAU, Hélène, GOBEC, Stanislav, WOLBER, Gerhard, ŠOLMAJER, Tomaž. Inhibitor design strategy based on an enzyme structural flexibility : a case of bacterial MurD ligase. Journal of chemical information and modeling. [Print ed.]. May 2014, vol. 54, iss. 5, str. 1451-1466, ilustr. ISSN 1549-9596. http://pubs.acs.org/doi/pdf/10.1021/ci500104m, DOI: 10.1021/ci500104m. [COBISS.SI-ID 5462810]

8. BRVAR, Matjaž, PERDIH, Andrej, RENKO, Miha, ANDERLUH, Gregor, TURK, Dušan, ŠOLMAJER, Tomaž. Structure-based discovery of substituted 4,5`-bithiazoles as novel DNA gyrase inhibitors. Journal of medicinal chemistry. 2012, vol. 55, issue 14, str. 6413-6426. ISSN 0022-2623. http://pubs.acs.org/doi/abs/10.1021/jm300395d, DOI: 10.1021/jm300395d. [COBISS.SI-ID 4999450]

9. ŠTEFANE, Bogdan, PERDIH, Andrej, PEVEC, Andrej, ŠOLMAJER, Tomaž, KOČEVAR, Marijan. The participation of 2H-pyran-2-ones in [4+2] cycloadditions : an experimental and computational study. European journal of organic chemistry. 2010, vol. 2010, issue 30, str. 5870-5883. ISSN 1434-193X. DOI: 10.1002/ejoc.201000236. [COBISS.SI-ID 34399749]

10. PERDIH, Andrej, KOTNIK, Miha, HODOŠČEK, Milan, ŠOLMAJER, Tomaž. Targeted molecular dynamics simulation studies of binding and conformational changes in E. coli MurD. Proteins. [Print ed.]. 2007, vol. 68, no. 1, str. 243-254. ISSN 0887-3585. [COBISS.SI-ID 3681818]

11. PRAŠNIKAR, Eva, BORIŠEK, Jure, PERDIH, Andrej. Senescent cells as promising targets to tackle age-related diseases. Ageing research reviews. Mar. 2021, vol. 66, str. 101251-1-101251-33, ilustr. ISSN 1568-1637. https://www.sciencedirect.com/science/article/pii/S156816372030386X?via%3Dihub, DOI: 10.1016/j.arr.2020.101251. [COBISS.SI-ID 46208003]

12. POGORELČNIK, Barbara, PERDIH, Andrej, ŠOLMAJER, Tomaž. Recent advances in the development of catalytic inhibitors of human DNA topoisomerase ▫$II\alpha$▫ as novel anticancer agents. Current medicinal chemistry. 2013, vol. 20, no. 5, str. 694-709. ISSN 0929-8673. [COBISS.SI-ID 5190682]