Miha Moškon

1. VEROVŠEK, Špela, ZUPANČIČ-STROJAN, Tadeja, JUVANČIČ, Matevž, PETROVČIČ, Simon, SVETINA, Matija, JANEŽ, Miha, PUŠNIK, Žiga, LEBAR BAJEC, Iztok, MOŠKON, Miha. The aspect of mobility and connectivity while assessing the neighbourhood sustainability. Academic journal of interdisciplinary studies. May 2021, vol. 10, no. 3, str. 37-48, ilustr. ISSN 2281-3993. https://www.richtmann.org/journal/index.php/ajis/article/view/12448, DOI: 10.36941/ajis. [COBISS.SI-ID 62625795], [SNIP]

2. RAVNIK, Šimen, ŽABKAR, Ines, PROSENC ZMRZLJAK, Uršula, JOVCHEVSKA, Ivana, ŠAMEC, Neja, MOŠKON, Miha, VIDETIČ PASKA, Alja. OligoPrime : an information system for oligonucleotide management. Biomedical engineering and computational biology. Sep. 2021, vol. 12, str. 1-9, ilustr. ISSN 1179-5972. https://journals.sagepub.com/doi/full/10.1177/11795972211041983, DOI: 10.1177/11795972211041983. [COBISS.SI-ID 75739139], [WoS]

3. WALAKIRA, Andrew, ROZMAN, Damjana, REŽEN, Tadeja, MRAZ, Miha, MOŠKON, Miha. Guided extraction of genome-scale metabolic models for the integration and analysis of omics data. Computational and Structural Biotechnology Journal. 2021, vol. 19, str. 3521-3530, graf. prikazi. ISSN 2001-0370. https://www.sciencedirect.com/science/article/pii/S2001037021002476, DOI: 10.1016/j.csbj.2021.06.009. [COBISS.SI-ID 66227971], [JCR, SNIP, Scopus]

4. MOŠKON, Miha, PUŠNIK, Žiga, ZIMIC, Nikolaj, MRAZ, Miha. Field-programmable biological circuits and configurable (bio)logic blocks for distributed biological computing. Computers in Biology and Medicine. [Print ed.]. Jan. 2021, vol. 128, str. 1-9, ilustr. ISSN 0010-4825. https://www.sciencedirect.com/science/article/abs/pii/S0010482520304406, DOI: 10.1016/j.compbiomed.2020.104109. [COBISS.SI-ID 37003267], [JCR, SNIP, WoS, Scopus]

5. BLAGOTINŠEK COKAN, Kaja, URLEP, Žiga, MOŠKON, Miha, MRAZ, Miha, KONG, Xiang Y., ESKILD, Winnie, ROZMAN, Damjana, JUVAN, Peter, REŽEN, Tadeja. Common transcriptional program of liver fibrosis in mouse genetic models and humans. International journal of molecular sciences. 2021, vol. 22, iss. 2, str. 1-21, ilustr. ISSN 1422-0067. https://www.mdpi.com/1422-0067/22/2/832, DOI: 10.3390/ijms22020832. [COBISS.SI-ID 47324419], [JCR, SNIP, WoS up to 6. 9. 2021: no. of citations (TC): 1, without self-citations (CI): 1, without self-citations per author (CIAu): 0,11, Scopus up to 27. 6. 2021: no. of citations (TC): 1, without self-citations (CI): 0, without self-citations per author (CIAu): 0,00]
financier: Slovenian Research Agency, P1-0104, P3-0390, P2-0359, J1-9176; Norwegian Research Council, NFR 240844 NCD

6. KOVAČ, Urša, ŽUŽEK, Zala, RASPOR DALL'OLIO, Lucija, POHAR, Katka, IHAN, Alojz, MOŠKON, Miha, ROZMAN, Damjana, STARČIČ ERJAVEC, Marjanca. Escherichia coli affects expression of circadian clock genes in human hepatoma cells. Microorganisms. 2021, vol. 9, iss. 4, str. 1-14. ISSN 2076-2607. https://www.mdpi.com/2076-2607/9/4/869, DOI: 10.3390/microorganisms9040869. [COBISS.SI-ID 61091843], [JCR, SNIP, WoS, Scopus]

7. MOŠKON, Miha. CosinorPy : a Python package for cosinor-based rhythmometry. BMC bioinformatics. Oct. 2020, vol. 21, str. 1-12, graf. prikazi. ISSN 1471-2105. https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-020-03830-w, DOI: 10.1186/s12859-020-03830-w. [COBISS.SI-ID 34886403], [JCR, SNIP, WoS up to 2. 10. 2021: no. of citations (TC): 6, without self-citations (CI): 5, without self-citations per author (CIAu): 5,00, Scopus up to 20. 9. 2021: no. of citations (TC): 8, without self-citations (CI): 7, without self-citations per author (CIAu): 7,00]

8. JUKAN, Nermin, ZAGORŠEK, David, LAZAREVIČ, Julija, PRELOŽNIK-ZUPAN, Irena, DEBELJAK, Nataša, MOŠKON, Miha. ViDis : a platform for constructing and sharing of medical algorithms. Journal of computational biology. [Print ed.]. Jun. 2020, vol. 27, no. 6, str. 941-947, ilustr. ISSN 1066-5277. https://www.liebertpub.com/doi/pdf/10.1089/cmb.2019.0238, DOI: 10.1089/cmb.2019.0238. [COBISS.SI-ID 1538376387], [JCR, SNIP, WoS, Scopus]

9. PUŠNIK, Žiga, MRAZ, Miha, ZIMIC, Nikolaj, MOŠKON, Miha. Computational analysis of viable parameter regions in models of synthetic biological systems. Journal of biological engineering. Sep. 2019, vol. 13, str. 1-21, graf. prikazi. ISSN 1754-1611. https://jbioleng.biomedcentral.com/articles/10.1186/s13036-019-0205-0, DOI: 10.1186/s13036-019-0205-0. [COBISS.SI-ID 1538345411], [JCR, SNIP, WoS up to 9. 8. 2021: no. of citations (TC): 3, without self-citations (CI): 1, without self-citations per author (CIAu): 0,25, Scopus up to 17. 3. 2021: no. of citations (TC): 2, without self-citations (CI): 0, without self-citations per author (CIAu): 0,00]

10. MAGDEVSKA, Lidija, MRAZ, Miha, ZIMIC, Nikolaj, MOŠKON, Miha. Initial state perturbations as a validation method for data-driven fuzzy models of cellular networks. BMC bioinformatics. Sep. 2018, vol. 19, str. 1-7, graf. prikazi. ISSN 1471-2105. https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2366-0, DOI: 10.1186/s12859-018-2366-0. [COBISS.SI-ID 1537917379], [JCR, SNIP, WoS up to 9. 8. 2021: no. of citations (TC): 1, without self-citations (CI): 1, without self-citations per author (CIAu): 0,25, Scopus up to 29. 3. 2020: no. of citations (TC): 1, without self-citations (CI): 1, without self-citations per author (CIAu): 0,25]

11. CVITANOVIĆ TOMAŠ, Tanja, URLEP, Žiga, MOŠKON, Miha, MRAZ, Miha, ROZMAN, Damjana. LiverSex computational model : sexual aspects in hepatic metabolism and abnormalities. Frontiers in physiology. Apr. 2018, vol. 9, str. 1-12. ISSN 1664-042X. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5907313/pdf/fphys-09-00360.pdf, DOI: 10.3389/fphys.2018.00360. [COBISS.SI-ID 33711833], [JCR, SNIP, WoS up to 14. 9. 2021: no. of citations (TC): 15, without self-citations (CI): 12, without self-citations per author (CIAu): 2,40, Scopus up to 27. 8. 2021: no. of citations (TC): 15, without self-citations (CI): 12, without self-citations per author (CIAu): 2,40]
financier: FP7 CASyM (Coordinating Action Systems Medicine Europe), grant, no. 305033, EU; Slovenian Research Agency, grants, infrastructure grant ELIXIR, P1-0390, P2-0359, SI

12. BORDON, Jure, MOŠKON, Miha, ZIMIC, Nikolaj, MRAZ, Miha. Semi-quantitative modelling of gene regulatory processes with unknown parameter values using fuzzy logic and Petri nets. Fundamenta informaticae. 2018, vol. 160, no. 1/2, str. 81-100, ilustr. ISSN 0169-2968. https://content.iospress.com/download/fundamenta-informaticae/fi1675?id=fundamenta-informaticae%2Ffi1675, DOI: 10.3233/FI-2018-1675. [COBISS.SI-ID 1537781699], [JCR, SNIP, WoS up to 9. 8. 2021: no. of citations (TC): 5, without self-citations (CI): 5, without self-citations per author (CIAu): 1,25, Scopus up to 18. 6. 2021: no. of citations (TC): 4, without self-citations (CI): 4, without self-citations per author (CIAu): 1,00]

13. MOŠKON, Miha, ZIMIC, Nikolaj, MRAZ, Miha. Grohar : automated visualization of genome-scale metabolic models and their pathways. Journal of computational biology. [Print ed.]. May 2018, vol. 25, no. 5, str. 505-508. ISSN 1066-5277. http://online.liebertpub.com/doi/10.1089/cmb.2017.0209, DOI: 10.1089/cmb.2017.0209. [COBISS.SI-ID 1537720515], [JCR, SNIP, WoS up to 9. 8. 2021: no. of citations (TC): 2, without self-citations (CI): 2, without self-citations per author (CIAu): 0,67, Scopus up to 20. 3. 2021: no. of citations (TC): 2, without self-citations (CI): 2, without self-citations per author (CIAu): 0,67]

14. VASYLCHENKOVA, Anastasiia, MRAZ, Miha, ZIMIC, Nikolaj, MOŠKON, Miha. Classical mechanics approach applied to analysis of genetic oscillators. IEEE/ACM transactions on computational biology and bioinformatics. [Print ed.]. May/Jun. 2017, vol. 14, no. 3, str. 721-727, ilustr. ISSN 1545-5963. http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=7447719&newsearch=true&queryText=classical%20mechanics%20approach%20applied%20to%20analysis%20of%20genetic%20oscillators, DOI: 10.1109/TCBB.2016.2550456. [COBISS.SI-ID 1536851139], [JCR, SNIP, WoS up to 9. 8. 2021: no. of citations (TC): 1, without self-citations (CI): 1, without self-citations per author (CIAu): 0,25, Scopus up to 3. 12. 2019: no. of citations (TC): 1, without self-citations (CI): 1, without self-citations per author (CIAu): 0,25]

15. MAGDEVSKA, Lidija, PUŠNIK, Žiga, MRAZ, Miha, ZIMIC, Nikolaj, MOŠKON, Miha. Computational design of synchronous sequential structures in biological systems. Journal of computational science. Jan. 2017, vol. 18, str. 24-31, ilustr. ISSN 1877-7503. http://www.sciencedirect.com/science/article/pii/S1877750316303866, DOI: 10.1016/j.jocs.2016.11.010. [COBISS.SI-ID 1537294275], [JCR, SNIP, WoS up to 9. 8. 2021: no. of citations (TC): 2, without self-citations (CI): 0, without self-citations per author (CIAu): 0,00, Scopus up to 21. 3. 2021: no. of citations (TC): 2, without self-citations (CI): 0, without self-citations per author (CIAu): 0,00]

16. MOŠKON, Miha, ZIMIC, Nikolaj, MRAZ, Miha. Realizacija dvojiškega pomnjenja v preprostih bioloških sistemih. Elektrotehniški vestnik. [Slovenska tiskana izd.]. 2016, letn. 83, št. 4, str. 194-200, ilustr. ISSN 0013-5852. http://ev.fe.uni-lj.si/4-2016/Moskon.pdf. [COBISS.SI-ID 1537252803], [SNIP, WoS, Scopus]

17. BIZJAK, Manca, ZIMIC, Nikolaj, MRAZ, Miha, MOŠKON, Miha. Computational framework for modeling multiple noncooperative transcription factor binding and its application to the analysis of nuclear factor kappa B oscillatory response. Journal of computational biology. [Print ed.]. Dec. 2016, vol. 23, no. 12, str. 923-933, ilustr. ISSN 1066-5277. http://online.liebertpub.com/doi/abs/10.1089/cmb.2016.0065, DOI: 10.1089/cmb.2016.0065. [COBISS.SI-ID 1536999619], [JCR, SNIP, WoS, Scopus]

18. BORDON, Jure, MOŠKON, Miha, ZIMIC, Nikolaj, MRAZ, Miha. Fuzzy logic as a computational tool for quantitative modelling of biological systems with uncertain kinetic data. IEEE/ACM transactions on computational biology and bioinformatics. [Print ed.]. 2015, vol. 12, no. 5, str. 1199-1205, ilustr. ISSN 1545-5963. http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=7089201, DOI: 10.1109/TCBB.2015.2424424. [COBISS.SI-ID 1536282563], [JCR, SNIP, WoS up to 9. 8. 2021: no. of citations (TC): 8, without self-citations (CI): 7, without self-citations per author (CIAu): 1,75, Scopus up to 30. 7. 2021: no. of citations (TC): 12, without self-citations (CI): 10, without self-citations per author (CIAu): 2,50]

19. PETRONI, Mattia, ZIMIC, Nikolaj, MRAZ, Miha, MOŠKON, Miha. Stochastic simulation algorithm for gene regulatory networks with multiple binding sites. Journal of computational biology. [Print ed.]. Mar. 2015, vol. 22, no. 3, str. 218-226, ilustr. ISSN 1066-5277. http://online.liebertpub.com/doi/10.1089/cmb.2014.0064, DOI: 10.1089/cmb.2014.0064. [COBISS.SI-ID 10671956], [JCR, SNIP, WoS up to 9. 8. 2021: no. of citations (TC): 2, without self-citations (CI): 0, without self-citations per author (CIAu): 0,00, Scopus up to 3. 12. 2019: no. of citations (TC): 2, without self-citations (CI): 0, without self-citations per author (CIAu): 0,00]

20. ŠOBERL, Domen, ZIMIC, Nikolaj, LEONARDIS, Aleš, KRIVIC, Jaka, MOŠKON, Miha. Hardware implementation of FAST algorithm for mobile applications. Journal of signal processing systems for signal, image, and video technology. [Print ed.]. 2015, vol. 79, no. 3, str. 247-256, ilustr. ISSN 1939-8018. http://link.springer.com/article/10.1007%2Fs11265-013-0843-2, DOI: 10.1007/s11265-013-0843-2. [COBISS.SI-ID 10041428], [JCR, SNIP, WoS up to 9. 8. 2021: no. of citations (TC): 3, without self-citations (CI): 3, without self-citations per author (CIAu): 0,60, Scopus up to 21. 4. 2021: no. of citations (TC): 3, without self-citations (CI): 3, without self-citations per author (CIAu): 0,60]

21. BORDON, Jure, MOŠKON, Miha, MRAZ, Miha. Overcoming unknown kinetic data for quantitative modelling of biological systems using fuzzy logic and Petri nets. In: HEINER, Monika (ed.). BioPPN 2014 : biological processes & Petri nets : proceedings of the 5th International Workshop on Biological Processes & Petri Nets, Tunis, Tunisia, June 23, 2014. [S. l.]: CEUR-WS, 2014. Str. 1-12, ilustr. CEUR workshop proceedings, vol. 1159. ISSN 1613-0073. http://ceur-ws.org/Vol-1159/paper2.pdf. [COBISS.SI-ID 10649940], [SNIP, Scopus up to 10. 8. 2020: no. of citations (TC): 1, without self-citations (CI): 1, without self-citations per author (CIAu): 0,33]
orig+Typology

22. MOŠKON, Miha, MRAZ, Miha. Systematic approach to computational design of gene regulatory networks with information processing capabilities. IEEE/ACM transactions on computational biology and bioinformatics. [Print ed.]. 2014, vol. 11, no. 2, str. 431-440, ilustr. ISSN 1545-5963. http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=6690102, DOI: 10.1109/TCBB.2013.2295792. [COBISS.SI-ID 10323028], [JCR, SNIP, WoS up to 9. 8. 2021: no. of citations (TC): 3, without self-citations (CI): 2, without self-citations per author (CIAu): 1,00, Scopus up to 10. 8. 2020: no. of citations (TC): 3, without self-citations (CI): 2, without self-citations per author (CIAu): 1,00]

23. STRAŽAR, Martin, MRAZ, Miha, ZIMIC, Nikolaj, MOŠKON, Miha. An adaptive genetic algorithm for parameter estimation of biological oscillator models to achieve target quantitative system response. Natural computing. Mar. 2014, vol. 13, no. 1, str. 119-127, ilustr. ISSN 1567-7818. [COBISS.SI-ID 9950804], [JCR, SNIP, WoS up to 9. 8. 2021: no. of citations (TC): 3, without self-citations (CI): 1, without self-citations per author (CIAu): 0,25, Scopus up to 12. 3. 2021: no. of citations (TC): 3, without self-citations (CI): 1, without self-citations per author (CIAu): 0,25]

24. VUČKO, Dušan, MRAZ, Miha, ZIMIC, Nikolaj, MOŠKON, Miha. Hybrid discrete algorithm for the modelling of gene regulatory networks. Biosystems and information technology : BIT journal. Nov. 2013, vol. 2, no. 2, str. 32-36, ilustr. http://bit-journal.eu/publications/2013-11/bit_id_131001_vucko.pdf. [COBISS.SI-ID 10288980]

25. MOŠKON, Miha, NOVAK, Štefan, MEDEOT, Marino, LEBAR BAJEC, Iztok, ZIMIC, Nikolaj, MRAZ, Miha. Solving the logistic problems with optimal resource assignment using fuzzy logic methods. Journal of advanced transportation. [Print ed.]. June 2013, vol. 47, no. 4, str. 447-460, ilustr. ISSN 0197-6729. http://onlinelibrary.wiley.com/doi/10.1002/atr.173/abstract, DOI: 10.1002/atr.173. [COBISS.SI-ID 8198740], [JCR, SNIP, WoS up to 9. 8. 2021: no. of citations (TC): 1, without self-citations (CI): 1, without self-citations per author (CIAu): 0,17, Scopus up to 26. 1. 2020: no. of citations (TC): 1, without self-citations (CI): 1, without self-citations per author (CIAu): 0,17]

26. MOŠKON, Miha, ZIMIC, Nikolaj, STRAŽAR, Martin, MRAZ, Miha. Comparison of selected performances of biological and electronic information processing structures. Przeglęad Elektrotechniczny. 2013, no. 2a, str. 165-169, ilustr. ISSN 0033-2097. http://pe.org.pl/abstract_pl.php?nid=7211. [COBISS.SI-ID 9649748], [SNIP, Scopus]

27. MOŠKON, Miha, MRAZ, Miha. Modelling and analysing the information processing capabilities of simple biological systems. Mathematical modelling and analysis. Sep. 2012, vol. 17, no. 4, str. 467-484, graf. prikazi. ISSN 1392-6292. http://inga.vgtu.lt/~art/. [COBISS.SI-ID 9330004], [JCR, SNIP, WoS up to 9. 8. 2021: no. of citations (TC): 1, without self-citations (CI): 0, without self-citations per author (CIAu): 0,00, Scopus up to 10. 8. 2020: no. of citations (TC): 2, without self-citations (CI): 0, without self-citations per author (CIAu): 0,00]

28. MOŠKON, Miha, MRAZ, Miha. Modeling as the essential step in the construction of biological computer structures. International journal of information and education technology : IJIET. Aug. 2011, vol. 1, no. 3, str. 185-189, graf. prikazi. ISSN 2010-3689. http://www.ijiet.org/papers/30-A148.pdf. [COBISS.SI-ID 8578644]

29. MOŠKON, Miha. Solving the vaguely defined assignment problems. International journal of mathematical models and methods in applied sciences. 2011, vol. 5, no. 4, str. 773-780, ilustr. ISSN 1998-0140. http://www.naun.org/journals/m3as/20-498.pdf. [COBISS.SI-ID 8476244], [SNIP, Scopus]

30. MOŠKON, Miha, AVBELJ, Monika, JERALA, Roman, ZIMIC, Nikolaj, MRAZ, Miha. Model realizacije funkcionalnosti RS-pomnilne celice v biološkem sistemu = A model of the RS memory-cell realization in biological systems. Elektrotehniški vestnik. [Slovenska tiskana izd.]. 2009, letn. 76, št. 4, str. 223-228, ilustr. ISSN 0013-5852. [COBISS.SI-ID 7445332], [SNIP, Scopus]

31. MOŠKON, Miha, AVBELJ, Monika, ZIMIC, Nikolaj, MRAZ, Miha. Toward in vivo digital synchronous sequential circuits. WSEAS Transactions on Circuits. Mar. 2009, vol. 8, no. 3, str. 301-310, ilustr. ISSN 1109-2734. [COBISS.SI-ID 7111764], [SNIP, Scopus up to 3. 12. 2019: no. of citations (TC): 5, without self-citations (CI): 4, without self-citations per author (CIAu): 1,00]

1.02 Review article

32. MOŠKON, Miha, KOMAC, Roman, ZIMIC, Nikolaj, MRAZ, Miha. Distributed biological computation : from oscillators, logic gates and switches to a multicellular processor and neural computing applications. Neural computing & applications. Aug. 2021, vol. 33, no. 15, str. 8923-8938, ilustr. ISSN 0941-0643. https://link.springer.com/article/10.1007/s00521-021-05711-6, DOI: 10.1007/s00521-021-05711-6. [COBISS.SI-ID 48415747], [JCR, SNIP, WoS, Scopus]

33. DEBELJAK, Nataša, LAZAREVIČ, Julija, MISKIČ, Dejan, VERMIGLIO, Lucija, KOPITAR, Anja, SOLAROVIČ, Anja, SEVER, Matjaž, FINK, Martina, PAJIČ, Tadej, ANŽEJ DOMA, Saša, MOŠKON, Miha, PRELOŽNIK-ZUPAN, Irena. Opredelitev eritrocitoz in predlog diagnostičnega algoritma v Sloveniji = Characterization of erythrocytosis and a proposed diagnostic algorithm in Slovenia. Zdravniški vestnik : glasilo Slovenskega zdravniškega društva. [Tiskana izd.]. maj-jun. 2019, letn. 88, št. 5/6, str. 263-275, ilustr. ISSN 1318-0347. https://vestnik.szd.si/index.php/ZdravVest/article/view/2880/2424. [COBISS.SI-ID 34416601], [SNIP, Scopus up to 1. 3. 2021: no. of citations (TC): 1, without self-citations (CI): 0, without self-citations per author (CIAu): 0,00]

34. CVITANOVIĆ TOMAŠ, Tanja, MOŠKON, Miha, MRAZ, Miha, ROZMAN, Damjana. Computational modelling of liver metabolism and its applications in research and the clinics. Acta chimica slovenica. [Spletna izd.]. June 2018, vol. 65, no. 2, str. 253-265, ilustr. ISSN 1580-3155. https://journals.matheo.si/index.php/ACSi/issue/view/8, DOI: 10.17344/acsi.2018.4461. [COBISS.SI-ID 33810905], [JCR, SNIP, WoS up to 9. 8. 2021: no. of citations (TC): 4, without self-citations (CI): 4, without self-citations per author (CIAu): 1,00, Scopus up to 19. 3. 2021: no. of citations (TC): 3, without self-citations (CI): 3, without self-citations per author (CIAu): 0,75]

35. REJC, Živa, MAGDEVSKA, Lidija, TRŠELIČ, Tilen, OSOLIN, Timotej, VODOPIVEC, Rok, MRAZ, Jakob, PAVLIHA, Eva, ZIMIC, Nikolaj, CVITANOVIĆ TOMAŠ, Tanja, ROZMAN, Damjana, MOŠKON, Miha, MRAZ, Miha. Computational modelling of genome-scale metabolic networks and its application to CHO cell cultures. Computers in Biology and Medicine. [Print ed.]. Sep. 2017, vol. 88, str. 150-160, ilustr. ISSN 0010-4825. http://www.sciencedirect.com/science/article/pii/S0010482517302299, DOI: 10.1016/j.compbiomed.2017.07.005. [COBISS.SI-ID 1537463235], [JCR, SNIP, WoS up to 9. 8. 2021: no. of citations (TC): 15, without self-citations (CI): 14, without self-citations per author (CIAu): 1,17, Scopus up to 27. 5. 2021: no. of citations (TC): 14, without self-citations (CI): 13, without self-citations per author (CIAu): 1,08]

36. CVITANOVIĆ TOMAŠ, Tanja, REICHERT, Matthias C., MOŠKON, Miha, MRAZ, Miha, LAMMERT, Frank, ROZMAN, Damjana. Large-scale computational models of liver metabolism : how far from the clinics?. Hepatology. 2017, vol. 66, no. 4, str. 1323-1334, ilustr. ISSN 0270-9139. http://onlinelibrary.wiley.com/doi/10.1002/hep.29268/full, DOI: 10.1002/hep.29268. [COBISS.SI-ID 1537425347], [JCR, SNIP, WoS up to 10. 9. 2021: no. of citations (TC): 14, without self-citations (CI): 9, without self-citations per author (CIAu): 1,50, Scopus up to 12. 10. 2021: no. of citations (TC): 15, without self-citations (CI): 9, without self-citations per author (CIAu): 1,50]
award: V okviru tedna Univerze v Ljubljani je delo izbrano med najodličnejše raziskovalne dosežke Univerze v Ljubljani v letu 2017

1.03 Short scientific article

37. PUŠNIK, Žiga, MOŠKON, Miha. Integracija strukturnih omejitev pri izpeljavi gensko regulatornih omrežij. Uporabna informatika. [Tiskana izd.]. 2021, letn. 29, št. 1, str. 25-29, ilustr. ISSN 1318-1882. https://uporabna-informatika.si/index.php/ui/article/view/110. [COBISS.SI-ID 55284483]

1.08 Published scientific conference contribution

38. VELIKAJNE, Nina, MOŠKON, Miha. Analiza ritmičnosti števnih podatkov z uporabo modela cosinor. In: FISTER, Iztok (ed.), et al. Proceedings of the 2021 7th Student Computer Science Research Conference (StuCoSReC). 1st ed. Maribor: University of Maribor, University Press: Faculty of Electrical Engineering and Computer Science; Ljubljana: Faculty of Computer and Information Science; Koper: Faculty of Mathematics, Natural Sciences and Information Technologies, 2021. Str. 61-64, graf. prikazi. ISBN 978-961-286-516-0. https://press.um.si/index.php/ump/catalog/book/611. [COBISS.SI-ID 76334851]

39. MOŠKON, Miha, REŽEN, Tadeja, DEBELJAK, Nataša, VIDETIČ PASKA, Alja. BiOpenBank information systems and its integration into the analysis of genetic predispositions in psychiatric disorders. In: STRLE, Toma (ed.), KOLENIK, Tine (ed.), MARKIČ, Olga (ed.). Kognitivna znanost : zbornik 22. Mednarodne multikonference Informacijska družba - IS 2019, 10. oktober 2019 : zvezek B = Cognitive Science : proceedings of the 22nd International Multiconference Information Society - IS 2019, 10 October, 2019, Ljubljana, Slovenia : volume B. Ljubljana: Institut "Jožef Stefan", 2019. Str. 36-38. Informacijska družba. ISBN 978-961-264-157-3, ISBN 978-961-264-158-0. ISSN 2630-371X. http://library.ijs.si/Stacks/Proceedings/InformationSociety/2019/IS2019_Volume_B%20-%20Kognitivna%20znanost.pdf. [COBISS.SI-ID 1538420675]

40. MOŠKON, Miha, TKALEC, Matic, ZIMIC, Nikolaj, MRAZ, Miha. Towards the declaration of inter-functional protocol for FRAM. In: R&M in the second machine age - the challenge of cyber physical systems : proceedings : Annual Reliability and Maintainability Symposium, RAMS 2019 : January 28-31, 2019, Orlando, Florida, USA. Piscataway (NJ): IEEE, cop. 2019. Str. 1-6, ilustr. Proceedings. Annual Reliability and Maintainability Symposium. ISBN 978-1-5386-6554-1. ISSN 0149-144X. [COBISS.SI-ID 1538112195], [WoS up to 9. 8. 2021: no. of citations (TC): 1, without self-citations (CI): 1, without self-citations per author (CIAu): 0,25, Scopus up to 5. 10. 2021: no. of citations (TC): 5, without self-citations (CI): 5, without self-citations per author (CIAu): 1,25]

41. HVALA, Staš, PUŠNIK, Žiga, REJC, Živa, PROSENC ZMRZLJAK, Uršula, BLAGOTINŠEK COKAN, Kaja, URLEP, Žiga, NADIŽAR, Nejc, ROZMAN, Damjana, MOŠKON, Miha. InfoGen : informacijski sistem za sledenje, analizo in vodenje vzorcev na področju funkcijske genomike. In: ŽEMVA, Andrej (ed.), TROST, Andrej (ed.). Zbornik šestindvajsete mednarodne Elektrotehniške in računalniške konference ERK 2017 = Proceedings of the Twenty-sixth International Electrotechnical and Computer Science Conference ERK 2017. ERK 2017, Portorož, Slovenija, 25. - 26. september 2017. Ljubljana: IEEE, Slovenska sekcija IEEE, 2017. Str. 524-527, ilustr. Zbornik ... Elektrotehniške in računalniške konference ERK ..., 26. ISSN 2591-0442. http://erk.fe.uni-lj.si/2017/papers/hvala(infogen__informacijski).pdf. [COBISS.SI-ID 1537556163]

42. PUŠNIK, Žiga, MAGDEVSKA, Lidija, MRAZ, Miha, ZIMIC, Nikolaj, MOŠKON, Miha. Computational framework for global sensitivity analysis of high-dimensional and poorly connected parameter spaces. In: Synthetic biology for manufacturing in the bioeconomy : The IET/SynbiCITE Engineering Biology Conference 2016, 13 - 15 December 2016, IET London. Stevenage: The Institution of Engineering and Technology, cop. 2016. Str. 1-2, ilustr. ISBN 978-1-78561-361-6. [COBISS.SI-ID 1537319363], [Scopus]

43. SOMRAK, Maja, MOŠKON, Miha, VUČKO, Dušan, PIRŠ, Boštjan, MRAZ, Miha, JERALA, Roman. Pharmacokinetic model for the evaluation of a proposed drug delivery system. In: TRDIN, Nejc (ed.), et al. Zbornik = Proceedings. 5. študentska konferenca Mednarodne podiplomske šole Jožefa Stefana = 5th Jožef Stefan International Postgraduate School Students Conference, 23. maj 2013, Ljubljana, Slovenija. Ljubljana: Mednarodna podiplomska šola Jožefa Stefana, 2013. Str. 189-198. ISBN 978-961-92871-5-6. [COBISS.SI-ID 26911783]

44. BORDON, Jure, MOŠKON, Miha, MRAZ, Miha. Modeling gene regulatory networks using Petri Nets. In: ZAJC, Baldomir (ed.), TROST, Andrej (ed.). Zbornik enaindvajsete mednarodne Elektrotehniške in računalniške konference ERK 2012, 17.-19. september 2012, Portorož, Slovenija. Ljubljana: IEEE Region 8, Slovenska sekcija IEEE, 2012. Zv. b, str. 43-46, graf. prikazi. Zbornik ... Elektrotehniške in računalniške konference ERK ... ISSN 1581-4572. [COBISS.SI-ID 9377108], [Scopus]

45. PETRONI, Mattia, CANCIANI, Luigi, MRAZ, Miha, MOŠKON, Miha. A qualitative method for parameter estimation in gene regulatory networks using extended Kalman filtering. In: ZAJC, Baldomir (ed.), TROST, Andrej (ed.). Zbornik enaindvajsete mednarodne Elektrotehniške in računalniške konference ERK 2012, 17.-19. september 2012, Portorož, Slovenija. Ljubljana: IEEE Region 8, Slovenska sekcija IEEE, 2012. Zv. b, str. 39-42, ilustr. Zbornik ... Elektrotehniške in računalniške konference ERK ... ISSN 1581-4572. [COBISS.SI-ID 9376596]

46. MOŠKON, Miha, MRAZ, Miha. Analyzing the information processing capabilities of gene expression based logic. In: ICCSIT2011 : proceedings. Danvers (MA): Institute of Electrical and Electronics Engineers, cop. 2011. Vol. 3, str. 297-300, ilustr. ISBN 978-1-61284-836-5, ISBN 978-1-61284-834-1. [COBISS.SI-ID 8416852]

47. MOŠKON, Miha. Finding optimal solutions of vaguely defined assignment problems. In: CHEN, Shaokang (ed.). Recent researches in applied computer and applied computational science. [S. l.]: WSEAS, cop. 2011. Str. 207-210, ilustr. ISBN 978-960-474-281-3. [COBISS.SI-ID 8244052], [Scopus]

48. MOŠKON, Miha. Metrike za vrednotenje primernosti bioloških sistemov kot procesnih gradnikov. In: ZAJC, Baldomir (ed.), TROST, Andrej (ed.). Zbornik dvajsete mednarodne Elektrotehniške in računalniške konference ERK 2011, 19.-21. september 2011, Portorož, Slovenija. Ljubljana: IEEE Region 8, Slovenska sekcija IEEE, 2011. Zv. b, str. 3-6, graf. prikazi. Zbornik ... Elektrotehniške in računalniške konference ERK ... ISSN 1581-4572. [COBISS.SI-ID 8613460]

49. MOŠKON, Miha, AVBELJ, Monika, ZIMIC, Nikolaj, MRAZ, Miha. Towards the realization of synchronous sequential biological circuits. In: MASTORAKIS, Nikos E. (ed.). Recent advances in mathematics and computers in biology and chemistry : proceedings of the 10th WSEAS International Conference on Mathematics and Computers in Biology and Chemistry (MCBC'09), Prague, Czech Republic, March 23-25, 2009. [S. l.]: WSEAS Press, cop. 2009. Str. 136-141, ilustr. Recent advances in biology and biomedicine. ISBN 978-960-474-062-8. ISSN 1790-5125. [COBISS.SI-ID 6998356]

50. MRAZ, Miha, MAGDEVSKI, Zlatko, FICZKO, Jelena, ZIMIC, Nikolaj, MOŠKON, Miha, JANEŽ, Miha, LEBAR BAJEC, Iztok. Towards multistate nanocomputing : the implementation of a primitive fuzzy controller. In: AVIS, David (ed.), KOLLMITZER, Christian (ed.), OVCHINNIKOV, Victor (ed.). ICQNM 2008. Los Alamitos; Piscataway; Tokyo: IEEE Computer Society, cop. 2008. Str. 45-49, ilustr. ISBN 0-7695-3085-0, ISBN 978-0-7695-3085-7. [COBISS.SI-ID 6328660], [Scopus]

51. MOŠKON, Miha, HEPPNER, Frank H., MRAZ, Miha, ZIMIC, Nikolaj, LEBAR BAJEC, Iztok. Fuzzy model of bird flock foraging behavior. In: ZUPANČIČ, Borut (ed.), KARBA, Rihard (ed.), BLAŽIČ, Sašo (ed.). EUROSIM 2007 : proceedings of the 6th EUROSIM Congress on Modelling and Simulation, 9-13 September 2007, Ljubljana, Slovenia. Vol. 2, Full papers. 6th EUROSIM Congress on Modelling and Simulation, Ljubljana, Slovenia, 9-13 September, 2007. Vienna: ARGESIM, cop. 2007. Str. 1-6, ilustr. ISBN 978-3-901608-32-2, ISBN 3-901608-32-X. [COBISS.SI-ID 6063444]

1.10 Published scientific conference contribution abstract (invited lecture)

52. BLAGOTINŠEK COKAN, Kaja, JUVAN, Peter, MOŠKON, Miha, URLEP, Žiga, MRAZ, Miha, KONG, X.Y., ESKILD, W., ROZMAN, Damjana, REŽEN, Tadeja. Transcriptional and metabolic rearrangements in liver fibrosis. In: Abstracts : virtual symposium. 15th CFGBC Symposium, 15th June 2020, Ljubljana. Ljubljana: Faculty of Medicine, 2020. http://cfgbc.mf.uni-lj.si/events-2020cfgbcsym15/events-2020cfgbcsym15-lectureabstracts/. [COBISS.SI-ID 19697923]

53. REŽEN, Tadeja, MOŠKON, Miha, ROZMAN, Damjana. From experimental to computational models. In: TranSYS Online Training School : 22nd - 27th, November 2020 : [abstracts]. Ljubljana: Faculty of Medicine, 2020. https://h2020transys.eu/transys-training-school-23rd-november-15-45tr/. [COBISS.SI-ID 47483139]

1.12 Published scientific conference contribution abstract

54. RASPOR DALL'OLIO, Lucija, KOVAČ, Urša, ŽUŽEK, Zala, POHAR, Katka, IHAN, Alojz, MOŠKON, Miha, STARČIČ ERJAVEC, Marjanca, ROZMAN, Damjana. Escherichia coli affects expression of circadian clock genes in human hepatoma cells. In: Abstracts : virtual symposium. 16th CFGBC Symposium, 17th June 2020, Ljubljana. Ljubljana: Faculty of Medicine, 2021. http://cfgbc.mf.uni-lj.si/wp-content/uploads/2021cfgbcsym16_abstracts.pdf. [COBISS.SI-ID 67411203]

55. BLAGOTINŠEK COKAN, Kaja, PERŠE, Martina, JERUC, Jera, LORBEK, Gregor, URLEP, Žiga, SKUBIC, Cene, JUVAN, Peter, REŽEN, Tadeja, MOŠKON, Miha, MRAZ, Miha, ESKILD, W., MATZ-SOJA, Madlen, SPINDELBÖCK, W., ROZMAN, Damjana. The molecular crosstalk between diminished cholesterol synthesis and chronic liver disease in mice and humans. FEBS open bio. 2021, vol. 11, suppl. 1, str. 502-503. ISSN 2211-5463. https://febs.onlinelibrary.wiley.com/doi/epdf/10.1002/2211-5463.13205. [COBISS.SI-ID 70069763], [JCR, SNIP]

56. PUŠNIK, Žiga, MRAZ, Miha, ZIMIC, Nikolaj, MOŠKON, Miha. Incorporation of motif information in the gene regulatory network inference. In: Lecture abstracts : [16th CFGBC Scientific Symposium : virtual symposium : Slovenia, June 17th, 2021. [Ljubljana: Faculty of Medicine, 2021]. Str. [24]. http://cfgbc.mf.uni-lj.si/wp-content/uploads/2021cfgbcsym16_abstracts.pdf. [COBISS.SI-ID 70694403]

57. ŽUŽEK, Zala, KOVAČ, Urša, RASPOR DALL'OLIO, Lucija, POHAR, Katka, IHAN, Alojz, MOŠKON, Miha, ROZMAN, Damjana, STARČIČ ERJAVEC, Marjanca. Escherichia coli affects expression of circadian clock genes in human hepatoma cells. In: Molecules of life : towards new horizons : FEBS 2021 : the 45th FEBS Congress : 3-8 July 2021, Ljubljana, Slovenia : virtual : abstracts. [S. l.]: Federation of European Biochemical Societies. 2021, [1] str. https://2021.febscongress.org/abstract_preview.aspx?idAbstractEnc=4424170095093094095096424170. [COBISS.SI-ID 69788163]

58. SKUBIC, Cene, IVANUŠA, Petra, WALAKIRA, Andrew, VIČIČ, Žiga, MOŠKON, Miha, MRAZ, Miha, ROZMAN, Damjana. Transcriptome landscape of HepG2 cells with deleted late genes of cholesterol synthesis : focus on RORC and the circadian clock. In: Molecules of life : towards new horizons : FEBS 2021 : the 45th FEBS Congress : 3-8 July 2021, Ljubljana, Slovenia : virtual : abstracts. [S. l.]: Federation of European Biochemical Societies. 2021, str. [1]. https://2021.febscongress.org/abstract_preview.aspx?idAbstractEnc=4424170094100096095093424170. [COBISS.SI-ID 75606787]

59. ŽUŽEK, Zala, KOVAČ, Urša, POHAR, Katka, MOŠKON, Miha, IHAN, Alojz, ROZMAN, Damjana, STARČIČ ERJAVEC, Marjanca. Odziv imunskega sistema na izbrane seve bakterije Escherichia coli in vpliv na cirkadiano uro. In: JAMNIKAR CIGLENEČKI, Urška (ed.), KUŠAR, Darja (ed.). 8. kongres Slovenskega mikrobiološkega društva : knjiga povzetkov : 23.-25. september 2020 : kongres SMD, 23.-25. 9. 2020 : virtualni kongres. Ljubljana: Slovensko mikrobiološko društvo, 2020. Str. 77-78, ilustr. ISBN 978-961-90346-8-2. [COBISS.SI-ID 41750275]

60. NASTRAN, Jurij, PUŠNIK, Žiga, MOŠKON, Miha. Analiza robustnosti sintetičnega gensko regulatornega omrežja pri načrtovanju biološkega procesorja. In: BAVEC, Aljoša (ed.), et al. BIOmolekularec.si : Dan biomolekularnih znanosti : zbornik povzetkov : Ljubljana, 24. september 2020 : [spletna izvedba dogodka]. Ljubljana: Slovensko biokemijsko društvo, 2020. Str. 42. ISBN 978-961-93879-9-3. http://biomolekularec.splet.arnes.si/files/2020/09/BIOmolekularec_2020-zbornik.pdf. [COBISS.SI-ID 47761923]

61. WALAKIRA, Andrew, OCIRA, Junior, DUROUX, Diane, FOULADI, Ramouna, MOŠKON, Miha, ROZMAN, Damjana, VAN STEEN, Kristel. Detecting gene-gene interactions from GWAS using diffusion kernel principal components. In: TranSYS Online Training School, 22nd - 27th, November 2020 : abstracts. Ljubljana: University of Ljubljana, Faculty of Medicine, Institute of Biochemistry, 2020. http://cfgbc.mf.uni-lj.si/wp-content/uploads/abstracts_2020transysschool_uncat.pdf. [COBISS.SI-ID 42195203]

62. KOVAČ, Urša, MOŠKON, Miha, POHAR, Katka, ŽUŽEK, Zala, STARČIČ ERJAVEC, Marjanca, IHAN, Alojz, ROZMAN, Damjana. Response of immune system to selected Escherichia coli strains impacts the circadian clock. In: Abstracts book. XVI Congress of the European Biological Rhythms, Lyon, 25 - 29 August 2019. [S. l.: s. n., 2019]. Str. 36. https://www.ebrs2019.com/wp-content/uploads/2019/08/Abstracts-book.pdf. [COBISS.SI-ID 34470105]

63. SKUBIC, Cene, IVANUŠA, Petra, MOŠKON, Miha, ROZMAN, Damjana. Sterol-clock network : a link between cholesterol synthesis and the circadian clock. In: Abstracts book. XVI Congress of the European Biological Rhythms, Lyon, 25 - 29 August 2019. [S. l.: s. n., 2019]. Str. 115. https://www.ebrs2019.com/wp-content/uploads/2019/08/Abstracts-book.pdf. [COBISS.SI-ID 34506457]

64. KOMAC, Roman, MRAZ, Miha, ZIMIC, Nikolaj, MOŠKON, Miha. Computational design of synchronised bacterial counters. In: Abstracts. 14th CFGBC Symposium, June 11th 2019, Faculty of Medicine, University of Ljubljana, Ljubljana. Ljubljana: Faculty of Medicine, 2019. Str. 1. http://cfgbc.mf.uni-lj.si/events/seminars/2019cfgbcsym14/abstracts/posterAbstract_RKomac.html. [COBISS.SI-ID 1538256323]

65. MOŠKON, Miha, DEBELJAK, Nataša, VIDETIČ PASKA, Alja, REŽEN, Tadeja. Towards the development of a comprehensive open source information solution for small biobanks. In: Abstracts. 14th CFGBC Symposium, June 11th 2019, Faculty of Medicine, University of Ljubljana, Ljubljana. Ljubljana: Faculty of Medicine, 2019. Str. 1. http://cfgbc.mf.uni-lj.si/events/seminars/2019cfgbcsym14/abstracts/lectureAbstract_MMoskon.html. [COBISS.SI-ID 1538256835]

66. NADIŽAR, Nejc, REŽEN, Tadeja, DEBELJAK, Nataša, VIDETIČ PASKA, Alja, ROZMAN, Damjana, MOŠKON, Miha. BiOpenBank : open source solution for management of biological samples and sample associated data in small biobanks. In: KISOVEC, Matic (ed.). Book of abstracts = Knjiga povzetkov. 13th Meeting of the Slovenian Biochemical Society with International Participation = 13. srečanje Slovenskega biokemijskega društva z mednarodno udeležbo, Dobrna, 24 - 27 September 2019. Ljubljana: Slovenian Biochemical Society, 2019. Str. 36. ISBN 978-961-93879-8-6. [COBISS.SI-ID 34507993]

67. BOHINC, Laura, POŽEK, Kity, BURJEK, Tilen, DRNOVŠEK, Eva, FABJANČIČ, Matevž, GORJAN, Andrej, GRČAR, Filip, JUKAN, Nermin, KOMAC, Roman, KOTNIK, Nejka, LAZAREVIČ, Julija, ROTVEJN PAJIČ, Vid, POVŠE, Andraž, PUCIHAR, Natalija, TEKAVEC, Sara, TUREL, Tina, VRHOVNIK, Gašper, ZAGORŠEK, David, BON, Jurij, MOŠKON, Stane, DEBELJAK, Nataša, REŽEN, Tadeja, VIDETIČ PASKA, Alja, MOŠKON, Miha. Development of an open information system for sample management in biomedical research studies and in a biobank repository. In: KISOVEC, Matic (ed.). Book of abstracts = Knjiga povzetkov. 13th Meeting of the Slovenian Biochemical Society with International Participation = 13. srečanje Slovenskega biokemijskega društva z mednarodno udeležbo, Dobrna, 24 - 27 September 2019. Ljubljana: Slovenian Biochemical Society, 2019. Str. 102. ISBN 978-961-93879-8-6. [COBISS.SI-ID 1538368195]

68. KRISTAN, Aleša, GAŠPERŠIČ, Jernej, PAJIČ, Tadej, REŽEN, Tadeja, KUNEJ, Tanja, KOLIČ, Rok, MARČAC-GRAHEK, Tatjana, MOŠKON, Miha, PRELOŽNIK-ZUPAN, Irena, DEBELJAK, Nataša. Diagnosis of familial erythrocytosis in clinical practice. In: KISOVEC, Matic (ed.). Book of abstracts = Knjiga povzetkov. 13th Meeting of the Slovenian Biochemical Society with International Participation = 13. srečanje Slovenskega biokemijskega društva z mednarodno udeležbo, Dobrna, 24 - 27 September 2019. Ljubljana: Slovenian Biochemical Society, 2019. Str. 126. ISBN 978-961-93879-8-6. http://dobrna2019.sbd.si/upload/docs/SBD2019_Knjiga_Povzetkov_web.pdf. [COBISS.SI-ID 4075028]

69. DRAKULIĆ, Živa, SKUBIC, Cene, MOŠKON, Miha, ROZMAN, Damjana. Altered cholesterol synthesis pathway influences the circadian rhythm of mouse embryonic fibroblasts. In: REŽEN, Tadeja (ed.). Book of abstracts. 1st electronic ed. Ljubljana: University of Ljubljana, Faculty of Medicine, 2019. Str. 29. ISBN 978-961-267-161-7. http://cfgbc.mf.uni-lj.si/events/seminars/2019eracosysmed/docs/bookOfAbstracts_2019eracosysmed.pdf. [COBISS.SI-ID 1538252739]

70. JERMAN, Lara, MOŠKON, Miha, ROZMAN, Damjana, MRAZ, Miha. Integration of circadian clock effects into a cholesterol biosynthesis model. In: REŽEN, Tadeja (ed.). Book of abstracts. 1st electronic ed. Ljubljana: University of Ljubljana, Faculty of Medicine, 2019. Str. 33. ISBN 978-961-267-161-7. http://cfgbc.mf.uni-lj.si/events/seminars/2019eracosysmed/docs/bookOfAbstracts_2019eracosysmed.pdf. [COBISS.SI-ID 1538251459]

71. JUKAN, Nermin, MOŠKON, Stane, DEBELJAK, Nataša, REŽEN, Tadeja, VIDETIČ PASKA, Alja, MOŠKON, Miha. GDPR and biobanking : ensuring compliance with the law. In: REŽEN, Tadeja (ed.). Book of abstracts. 1st electronic ed. Ljubljana: University of Ljubljana, Faculty of Medicine, 2019. Str. 34. ISBN 978-961-267-161-7. http://cfgbc.mf.uni-lj.si/events/seminars/2019eracosysmed/docs/bookOfAbstracts_2019eracosysmed.pdf. [COBISS.SI-ID 1538251203]

72. KOVAČ, Urša, MALOVRH, Katja, MOŠKON, Miha, REŽEN, Tadeja, ROZMAN, Damjana. Lipids around the clock : findings from different human cell lines. In: REŽEN, Tadeja (ed.). Book of abstracts. 1st electronic ed. Ljubljana: University of Ljubljana, Faculty of Medicine, 2019. Str. 36. ISBN 978-961-267-161-7. http://cfgbc.mf.uni-lj.si/events/seminars/2019eracosysmed/docs/bookOfAbstracts_2019eracosysmed.pdf. [COBISS.SI-ID 1538253251]

73. PUŠNIK, Žiga, MRAZ, Miha, ZIMIC, Nikolaj, MOŠKON, Miha. Constraint-based inference of gene regulatory networks. In: REŽEN, Tadeja (ed.). Book of abstracts. 1st electronic ed. Ljubljana: University of Ljubljana, Faculty of Medicine, 2019. Str. 40. ISBN 978-961-267-161-7. http://cfgbc.mf.uni-lj.si/events/seminars/2019eracosysmed/docs/bookOfAbstracts_2019eracosysmed.pdf. [COBISS.SI-ID 1538250179]

74. SMERKOL, Maj, ŠTEBLAJ, Jurij, KLANEČEK, Žan, MRAZ, Miha, ZIMIC, Nikolaj, MOŠKON, Miha. Computational analysis of parametric variability influence on the dynamics of synchronized cellular populations. In: REŽEN, Tadeja (ed.). Book of abstracts. 1st electronic ed. Ljubljana: University of Ljubljana, Faculty of Medicine, 2019. Str. 42. ISBN 978-961-267-161-7. http://cfgbc.mf.uni-lj.si/events/seminars/2019eracosysmed/docs/bookOfAbstracts_2019eracosysmed.pdf. [COBISS.SI-ID 1538250691]

75. POŽEK, Kity, TUREL, Tina, BURJEK, Tilen, DRNOVŠEK, Eva, GORJAN, Andrej, KOMAC, Roman, KOTNIK, Nejka, ROTVEJN PAJIČ, Vid, TEKAVEC, Sara, ZAGORŠEK, David, BON, Jurij, DEBELJAK, Nataša, MOŠKON, Miha, VIDETIČ PASKA, Alja, REŽEN, Tadeja. StandBiobank : standardization of information systems for management of samples and data for research laboratories. In: REŽEN, Tadeja (ed.). Book of abstracts. 1st electronic ed. Ljubljana: University of Ljubljana, Faculty of Medicine, 2019. Str. 44. ISBN 978-961-267-161-7. http://cfgbc.mf.uni-lj.si/2019eracosysmed/. [COBISS.SI-ID 34367449]

76. ŽUŽEK, Zala, KOVAČ, Urša, POHAR, Katka, MOŠKON, Miha, IHAN, Alojz, ROZMAN, Damjana, STARČIČ ERJAVEC, Marjanca. Selection of Escherichia coli strains and pre-assays needed to study the effect of bacteria on human hepatoma cell lines. In: REŽEN, Tadeja (ed.). Book of abstracts. 1st electronic ed. Ljubljana: University of Ljubljana, Faculty of Medicine, 2019. Str. 47. ISBN 978-961-267-161-7. http://cfgbc.mf.uni-lj.si/events/seminars/2019eracosysmed/docs/bookOfAbstracts_2019eracosysmed.pdf. [COBISS.SI-ID 1538252995]

77. MOŠKON, Miha, CVITANOVIĆ TOMAŠ, Tanja, MRAZ, Miha, ROZMAN, Damjana. Hands-on tutorial on object-oriented modelling of large-scale metabolic models. In: EASyM Europe 2018 : abstracts. New Rochelle (NY): Mary Ann Liebert, 2019. Str. a2. Systems medicine, #vol. #2, no. 1. ISSN 2573-3370. https://www.liebertpub.com/doi/pdf/10.1089/sysm.2018.29003.abstracts. [COBISS.SI-ID 1538104259]

78. MOŠKON, Miha, ZIMIC, Nikolaj, MRAZ, Miha. Grohar - computational tool for the analysis, visualisation and alignment of metabolic networks. In: EASyM Europe 2018 : abstracts. New Rochelle (NY): Mary Ann Liebert, 2019. Str. a3. Systems medicine, #vol. #2, no. 1. ISSN 2573-3370. https://www.liebertpub.com/doi/pdf/10.1089/sysm.2018.29003.abstracts. [COBISS.SI-ID 1538104515]

79. JUKAN, Nermin, ZAGORŠEK, David, PRELOŽNIK-ZUPAN, Irena, DEBELJAK, Nataša, MOŠKON, Miha. ViDis : web-based platform for constructing and sharing visualizations of diagnostic algorithms. In: EASyM Europe 2018 : abstracts. New Rochelle (NY): Mary Ann Liebert, 2019. Str. a3. Systems medicine, #vol. #2, no. 1. ISSN 2573-3370. https://www.liebertpub.com/doi/pdf/10.1089/sysm.2018.29003.abstracts. [COBISS.SI-ID 1538104771]

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123. MOŠKON, Miha. Mehki nagon hranjenja pri simulaciji letenja ptic v jatah. In: ZAJC, Baldomir (ed.), TROST, Andrej (ed.). Zbornik petnajste mednarodne Elektrotehniške in računalniške konference ERK 2006, 25. - 27. september 2006, Portorož, Slovenija. Ljubljana: IEEE Region 8, Slovenska sekcija IEEE, 2006. Zv. b, str. 383-384, ilustr. Zbornik ... Elektrotehniške in računalniške konference ERK ... ISSN 1581-4572. [COBISS.SI-ID 5628244]

1.13 Published professional conference contribution abstract

124. TKALEC, Matic, MOŠKON, Miha, MRAZ, Miha. Primer uporabe FRAM metode za varnostno analizo funkcij predvzletnih operacij športnega letala. In: 1. CAA konferenca o letalski varnosti : Kranjska Gora, 9. maj 2019. [Ljubljana: Javna agencija za civilno letalstvo Republike Slovenije], 2019. 19 prosojnic, ilustr. [COBISS.SI-ID 1538223555]

1.16 Independent scientific component part or a chapter in a monograph

125. MOŠKON, Miha, BORDON, Jure, MRAZ, Miha, ZIMIC, Nikolaj, PETRONI, Mattia. Computational approaches in synthetic and systems biology. In: VALENTE, André Xavier C. N. (ed.). Recent advances in systems biology research. New York: Nova Science Publishers, 2014. Str. 131-156. Systems biology. ISBN 978-1-62948-737-3. https://www.novapublishers.com/catalog/product_info.php?products_id=47098. [COBISS.SI-ID 10489684], [Scopus]

1.22 Interview

126. MOŠKON, Miha (interviewee). In Silico talks : an interview with prof. Miha Moškon professor at the Faculty of Computer and Information Science, University of Ljubljana. YouTube. 21. 7. 2021, 1 spletni vir (1 videodatoteka (7 min, 17 sek)). https://www.youtube.com/watch?v=3-46Mx9emmU. [COBISS.SI-ID 72203523]

MONOGRAPHS AND OTHER COMPLETED WORKS

2.03 Reviewed university, higher education or higher vocational education textbook

127. MOŠKON, Miha. Osnove programiranja v jeziku Python za neračunalničarje. Ljubljana: Fakulteta za računalništvo in informatiko, 2020. 206 str., ilustr. ISBN 978-961-7059-04-5. http://zalozba.fri.uni-lj.si/moskon2020.pdf. [COBISS.SI-ID 32096259]

128. MOŠKON, Miha. Osnove programiranja v jeziku Python za neračunalničarje. Ljubljana: Fakulteta za računalništvo in informatiko, 2020. 1 spletni vir (1 datoteka PDF (VII, 206 str.)), ilustr. ISBN 978-961-7059-02-1. http://zalozba.fri.uni-lj.si/moskon2020.pdf. [COBISS.SI-ID 31230723]

129. MRAZ, Miha, MOŠKON, Miha. Modeliranje računalniških omrežij. 1. izd. Ljubljana: Založba FE in FRI, 2012. ISBN 978-961-6209-80-9. https://ucilnica.fri.uni-lj.si/course/view.php?id=209. [COBISS.SI-ID 265042944]

2.05 Other educational material

130. MOŠKON, Miha. Priprave na vaje za predmet Osnove digitalnih vezij. 1. izd. Ljubljana: Založba UL FRI, 2017. ilustr. ISBN 978-961-6209-94-6. http://zalozba.fri.uni-lj.si/moskon2017.pdf. [COBISS.SI-ID 292687616]

2.08 Doctoral dissertation

131. MOŠKON, Miha. Modeli in metrike dinamike preklopa v enostavnih bioloških sistemih za potrebe računalniških struktur prihodnosti : doktorska disertacija. Ljubljana: [M. Moškon], 2012. 1 optični disk (CD-ROM), ilustr. http://eprints.fri.uni-lj.si/1804/. [COBISS.SI-ID 264646400]

132. MOŠKON, Miha. Modeli in metrike dinamike preklopa v enostavnih bioloških sistemih za potrebe računalniških struktur prihodnosti : doktorska disertacija. Ljubljana: [M. Moškon], 2012. X, 163 str., ilustr. http://eprints.fri.uni-lj.si/1804/. [COBISS.SI-ID 9388116]

2.11 Undergraduate thesis

133. MOŠKON, Miha. Modeliranje iskanja izvora hrane v mehkem modelu za računalniško simulacijo letenja ptic v jati : diplomska naloga. Ljubljana: [M. Moškon], 2007. VIII, 45 str., ilustr. http://eprn.fri.uni-lj.si/20/. [COBISS.SI-ID 5825108]

2.12 Final research report

134. FERFILA, Nevenka (author, project manager), BOH PODGORNIK, Bojana, GRAMC, Kristina, GRIESSLER BULC, Tjaša, HAREJ, Jan, KAMBIČ, Nejc, MOŠKON, Miha, PRELEC POLJANŠEK, Pia, ROPRET, Maruša, RUTAR POLANEC, Valentina, SANKOVIČ, Nina, ŠKRAJNAR, Žana, VIDIC, Tamara. Temne skrivnosti hitre mode : končno poročilo o rezultatih raziskovalnega projekta : javni razpis "Projektno delo z gospodarstvom in negospodarstvom v lokalnem in regionalnem okolju Po kreativni poti do znanja 2016 - 2017" v okviru dejavnosti operativnega programa za izvajanje Evropske kohezijske politike v obdobju 2014 - 2020. Ljubljana: Zdravstvena fakulteta, 2017. 1 zv. (loč.pag.), ilustr. [COBISS.SI-ID 5445483]

135. ZIMIC, Nikolaj, MRAZ, Miha, LEBAR BAJEC, Iztok, JAZBEC, Andrej, PEČAR, Primož, JANEŽ, Miha, MOŠKON, Miha, ČEHOVIN, Vitomir, VIRANT, Jernej. Vpeljava mehke logike v proces upravljanja obrambnega sistema : zaključno poročilo o rezultatih opravljenega raziskovalnega dela na projektu v okviru ciljnega raziskovalnega programa "Znanje za varnost in mir 2006-2010". [Ljubljana: Fakulteta za računalništvo in informatiko], 2008. 8 f. [COBISS.SI-ID 6501716]

136. ZIMIC, Nikolaj, MRAZ, Miha, LEBAR BAJEC, Iztok, JAZBEC, Andrej, PEČAR, Primož, JANEŽ, Miha, MOŠKON, Miha, ČEHOVIN, Vitomir. Zasnova komunikacijskih protokolov za potrebe medicinskih aplikacij : zaključno poročilo o rezultatih raziskovalnega projekta v letu 2006/2007. Ljubljana: Fakulteta za računalništvo in informatiko, Laboratorij za računalniške strukture in sisteme, 2007. 2 zv. [COBISS.SI-ID 6103892]

2.13 Treatise, preliminary study, study

137. KOLEV, Nikolay Stefanov, MOŠKON, Miha, SCOPCHANOV, Michael, ZIMIC, Nikolaj. Management system for mobile robots collaboration : report. Ljubljana: Faculty of Computer and Information Science; Varna: Faculty of Computing and Automation, 2011. 112 str., ilustr. [COBISS.SI-ID 8906836]

138. MEHMED, Ayhan, MOŠKON, Miha, SCOPCHANOV, Michael, ZIMIC, Nikolaj. Video surveilance with Beagle Board : report. Ljubljana: Faculty of Computer and Information Science; Varna: Faculty of Computing and Automation, 2011. 43 f., ilustr. [COBISS.SI-ID 8907348]

139. MRAZ, Miha, ZIMIC, Nikolaj, LEBAR BAJEC, Iztok, PEČAR, Primož, MOŠKON, Miha, ŠOBERL, Domen, JANEŽ, Miha, KOPRIVEC, Miran, VIZEC, Igor, TRATAR, Boštjan. Analiza zanesljivosti elektronskih komponent in tiskanin : analiza. [Ljubljana: Fakulteta za računalništvo in informatiko], 2009. 34 f., tabele. [COBISS.SI-ID 7528276]

140. VIRANT, Jernej, ZIMIC, Nikolaj, MRAZ, Miha, LEBAR BAJEC, Iztok, JAZBEC, Andrej, PEČAR, Primož, MOŠKON, Miha, JANEŽ, Miha, ČEHOVIN, Vitomir, MEDEOT, Marino. Uporaba mehke logike na področju obrambe in vojaških veščin : novo znanje za starešine. Ljubljana: [Fakulteta za računalništvo in informatiko], 2008. VI, 234 str., ilustr. [COBISS.SI-ID 6500948]

2.14 Project documentation (preliminary design, working design)

141. ZIMIC, Nikolaj, MRAZ, Miha, LEBAR BAJEC, Iztok, DEMŠAR, Jure, BORDON, Jure, PETRONI, Mattia, MOŠKON, Miha, MEDEN, Blaž, PANGERŠIČ, Dominik, PUZIGAČA, Mitja. TMG Cloud : dokumentacija. Ljubljana: Fakulteta za računalništvo in informatiko, 2016. 1 zv. (loč. pag.), ilustr. [COBISS.SI-ID 1536808387]

142. ZIMIC, Nikolaj, MRAZ, Miha, LEBAR BAJEC, Iztok, DEMŠAR, Jure, BORDON, Jure, PETRONI, Mattia, MOŠKON, Miha, ŠOBERL, Domen. TMG Cloud : dokumentacija prototipa. Ljubljana: Fakulteta za računalništvo in informatiko, 2013. 44 str., ilustr. [COBISS.SI-ID 10376788]

143. ZIMIC, Nikolaj, MRAZ, Miha, LEBAR BAJEC, Iztok, ŠOBERL, Domen, PEČAR, Primož, MOŠKON, Miha. xSTP : dizajn dokument. [Ljubljana: Fakulteta za računalništvo in informatiko], 2013. 40 str., ilustr. [COBISS.SI-ID 10385748]

144. ZIMIC, Nikolaj, MRAZ, Miha, LEBAR BAJEC, Iztok, ŠOBERL, Domen, PEČAR, Primož, MOŠKON, Miha. xSTP : funkcijska specifikacija. [Ljubljana: Fakulteta za računalništvo in informatiko], 2013. 21 str., ilustr. [COBISS.SI-ID 10386004]

145. ZIMIC, Nikolaj, MRAZ, Miha, LEBAR BAJEC, Iztok, ŠOBERL, Domen, PEČAR, Primož, MOŠKON, Miha. xSTP : testni scenariji. [Ljubljana: Fakulteta za računalništvo in informatiko], 2013. 22 str., ilustr. [COBISS.SI-ID 10385492]

146. ŠOBERL, Domen, ZIMIC, Nikolaj, LEBAR BAJEC, Iztok, PEČAR, Primož, MOŠKON, Miha. Architecture of distributed intelligence in access network : providing high availability : detailed protocol specification on the level of network element. [Ljubljana: Fakulteta za računalništvo in informatiko], 2012. 62 str., ilustr. [COBISS.SI-ID 10387796]

147. ŠOBERL, Domen, ZIMIC, Nikolaj, LEBAR BAJEC, Iztok, PEČAR, Primož, MOŠKON, Miha. Remote mirroring : dizajn specifikacija. [Ljubljana: Fakulteta za računalništvo in informatiko], 2012. 28 str., ilustr. [COBISS.SI-ID 10387028]

148. ŠOBERL, Domen, ZIMIC, Nikolaj, LEBAR BAJEC, Iztok, PEČAR, Primož, MOŠKON, Miha. Remote mirroring : študija izvedljivosti. [Ljubljana: Fakulteta za računalništvo in informatiko], 2012. 20 str., ilustr. [COBISS.SI-ID 10386516]

149. ZIMIC, Nikolaj, MRAZ, Miha, LEBAR BAJEC, Iztok, ŠOBERL, Domen, PEČAR, Primož, MOŠKON, Miha. Uvedba licenc in licenčne politike na segment dostopa : predlog licenčne arhitekture. [Ljubljana: Fakulteta za računalništvo in informatiko], 2012. 61 str., ilustr. [COBISS.SI-ID 10387540]

150. ZIMIC, Nikolaj, LEBAR BAJEC, Iztok, ŠOBERL, Domen, PEČAR, Primož, MOŠKON, Miha. Arhitektura distribuirane inteligence v dostopovnem omrežju : zagotavljanje visoke razpoložljivosti : izbira redundančnega protokola na različnih nivojih omrežja. [Ljubljana: Fakulteta za računalništvo in informatiko], 2011. 56 str., ilustr. [COBISS.SI-ID 10388052]

151. ZIMIC, Nikolaj, LEBAR BAJEC, Iztok, ŠOBERL, Domen, PEČAR, Primož, MOŠKON, Miha. Arhitektura distribuirane inteligence v dostopovnem omrežju : zagotavljanje visoke razpoložljivosti : rezultati študije visoko/redundančnih protokolov. [Ljubljana: Fakulteta za računalništvo in informatiko], 2011. 60 str., ilustr. [COBISS.SI-ID 10388308]

152. ZIMIC, Nikolaj, LEBAR BAJEC, Iztok, ŠOBERL, Domen, PEČAR, Primož, MOŠKON, Miha. Remote mirroring : funkcijska specifikacija. [Ljubljana: Fakulteta za računalništvo in informatiko], 2011. 20 str., ilustr. [COBISS.SI-ID 10387284]

153. ZIMIC, Nikolaj, MRAZ, Miha, LEBAR BAJEC, Iztok, PEČAR, Primož, MOŠKON, Miha. Analiza standarda G.8302 Ethernet Ring Protection Switching : funkcijska specifikacija. Ljubljana: [Fakulteta za računalništvo in informatiko], 2010. 6 f., ilustr. [COBISS.SI-ID 7734356]

154. ZIMIC, Nikolaj, MRAZ, Miha, LEBAR BAJEC, Iztok, PEČAR, Primož, MOŠKON, Miha. Redundantna priključitev perifernih plošč : design specifikacija. Ljubljana: [Fakulteta za računalništvo in informatiko], 2010. 22 f., ilustr. [COBISS.SI-ID 7734100]

155. ZIMIC, Nikolaj, MRAZ, Miha, LEBAR BAJEC, Iztok, PEČAR, Primož, MOŠKON, Miha. Selective Q-in-Q : design specifikacija. Ljubljana: [Fakulteta za računalništvo in informatiko], 2010. 7 f., ilustr. [COBISS.SI-ID 7733844]

156. ZIMIC, Nikolaj, MRAZ, Miha, LEBAR BAJEC, Iztok, PEČAR, Primož, MOŠKON, Miha. EAPS protokol : funkcijska specifikacija. Ljubljana: [Fakulteta za računalništvo in informatiko], 2009. 19 f., ilustr. [COBISS.SI-ID 7733588]

157. ZIMIC, Nikolaj, MRAZ, Miha, LEBAR BAJEC, Iztok, PEČAR, Primož, MOŠKON, Miha, ČEHOVIN, Vitomir. Redundančna priključitev EAPS obroča proti centralnemu obroču : design specifikacija. Ljubljana: [Fakulteta za računalništvo in informatiko], 2009. 5 f. [COBISS.SI-ID 7733076]

158. ZIMIC, Nikolaj, MRAZ, Miha, LEBAR BAJEC, Iztok, JAZBEC, Andrej, PEČAR, Primož, MOŠKON, Miha, JANEŽ, Miha, ČEHOVIN, Vitomir. Quick-linkdown funkcionalnost : funkcijska specifikacija. Ljubljana: [Fakulteta za računalništvo in informatiko], 2008. 13 f., ilustr. [COBISS.SI-ID 7732820]

159. ZIMIC, Nikolaj, MRAZ, Miha, LEBAR BAJEC, Iztok, PEČAR, Primož, MOŠKON, Miha, ČEHOVIN, Vitomir. Sobivanje protokolov v redundančnih omrežjih : analiza delovanja. Ljubljana: [Fakulteta za računalništvo in informatiko], 2008. 7 f., ilustr. [COBISS.SI-ID 7733332]

2.21 Software

160. ZIMIC, Nikolaj, MRAZ, Miha, LEBAR BAJEC, Iztok, JAZBEC, Andrej, PEČAR, Primož, JANEŽ, Miha, MOŠKON, Miha, ČEHOVIN, Vitomir, VIRANT, Jernej. Programska oprema "Ujma" za reševanje logističnih problemov z mehko logiko v slovenski vojski. Ljubljana: Fakulteta za računalništvo in informatiko, 2008. 1 optični disk (CD-ROM). [COBISS.SI-ID 6507348]

2.25 Other monographs and other completed works

161. MOŠKON, Miha. Mehki nagon hranjenja pri simulaciji letenja ptic v jati : delo je prirpravljeno v skladu s Pravilnikom o podeljevanju Prešernovih nagrad študentom, pod mentorstvom prof. dr. Nikolaja Zimica in somentorstvom as. dr. Iztoka Lebarja Bajca. Ljubljana: [M. Moškon], 2006. VIII, 42 str., ilustr. http://eprints.fri.uni-lj.si/3715/. [COBISS.SI-ID 5629780]
award: Fakultetna Prešernova nagrada

PERFORMED WORKS (EVENTS)

3.12 Exhibition

162. KRIVIC, Jaka, JOGAN, Matjaž, LEONARDIS, Aleš, MOŠKON, Miha, ŠOBERL, Domen, ZIMIC, Nikolaj. Avtobusna postaja : demonstracija uporabe računalniškega vida v sistemu za mobilno interakcijo z urbanimi objekti. Ljubljana: Fakulteta za računalništvo in informatiko, 1. 12. 2010. [COBISS.SI-ID 8098388]

3.14 Invited lecture at foreign university

163. MOŠKON, Miha. Analysis of fitness landscape investigation efficiency : predavanje na Institute of Systems and Synthetic Biology, University of Évry-Val-d'Essonne, 18. marec 2013. Évry, 2013. [COBISS.SI-ID 9786196]

164. MOŠKON, Miha. Extending the applicability of Phage-Assisted Continuous Evolution (PACE). Évry: Institute of Systems and Synthetic Biology, University of Évry-Val-d'Essonne, June 21th 2013. [COBISS.SI-ID 9935700]

165. MOŠKON, Miha. Hardware support for mobile vision. Varna: Technical University, 22-26 September 2010. [COBISS.SI-ID 8179284]

166. MOŠKON, Miha. Fuzzy logic applied to modelling of bird flock foraging behavior. Kharkiv: Polytechnic Institute, 23. 4. 2008. [COBISS.SI-ID 6459220]

3.15 Unpublished conference contribution

167. MAGDEVSKA, Lidija, MOŠKON, Miha. Application of fuzzy temporal logic to biological systems modelling : lecture at 4th International Synthetic & Systems Biology Summer School - SSBSS 2017, Robinson College, University of Cambridge, UK, 17-21 July 2017. [COBISS.SI-ID 1537477059]

168. CVITANOVIĆ TOMAŠ, Tanja, BELIČ, Aleš, MRAZ, Miha, MOŠKON, Miha, ROZMAN, Damjana. Application of SteatoNet to predict network disorder in cholesterol metabolism : Advanced Lecture Course on Computational Systems Biology, COMPSYSBIO, Aussois, France, April, 6-11 2015. [COBISS.SI-ID 1536283331]

169. BIZJAK, Manca, MRAZ, Miha, ZIMIC, Nikolaj, MOŠKON, Miha. Computational approaches for quantitative modeling of gene regulatory networks with multiple transcription factor DNA binding site repeats : Biology meets engineering and computer science, International Synthetic & Systems Biology Summer School, SSBSS'15, Taormina, Sicily, Italy, July 5-9, 2015. [COBISS.SI-ID 1536361411]

170. MOŠKON, Miha. Computational modelling, analysis and design of biological systems : lecture at Machine learning and systems biosciences, International workshop from 22 to 24 June 2015, Ljubljana. [COBISS.SI-ID 1536348099]

171. PETRONI, Mattia, MOŠKON, Miha. A nested stochastic simulation algorithm for the gene regulatory network of the Epstein-Barr virus : 14th Workshop on Algorithms in Bioinformatics, September 9, 2014, Wroclaw, Poland. [COBISS.SI-ID 10763604]

3.25 Other performed works

172. MOŠKON, Miha, ROZMAN, Damjana, CVITANOVIĆ TOMAŠ, Tanja. Tackling liver disease : an object oriented modelling approach : hands-on tutorial at CASyM Winter School, 3rd SySBioMED, March 29th - April 1st 2017, Ljubljana, Slovenia. [COBISS.SI-ID 1537399235]

173. ROZMAN, Damjana, CVITANOVIĆ TOMAŠ, Tanja, MOŠKON, Miha. Tackling liver disease : an object modelling approach : hands-on tutorial at Modelling and bioinformatics for personalised medicine, 2nd SysBioMed, 1st Conference of the European Association of Systems Medicine, 26th October 2016. [COBISS.SI-ID 1537255363]

174. MOŠKON, Miha, CVITANOVIĆ TOMAŠ, Tanja, MRAZ, Miha. Understanding complex diseases with object oriented modelling : hands-on tutorial at EIT Health Summer School on Big Data for Healthy Living, 27 June - 06 July 2016, Archamps, France. [COBISS.SI-ID 1537019587]

SECONDARY AUTHORSHIP

Editor

175. Neural computing & applications. MOŠKON, Miha (member of editorial board 2020-). Berlin: Springer.; New York: Springer.; Godalming: Springer. ISSN 1433-3058. http://link.springer.de/link/service/journals/00521/index.htm, http://link.springer-ny.com/link/service/journals/00521/index.htm. [COBISS.SI-ID 512029977]

Mentor for Doctoral Dissertations (Bologna study programme)

176. PETRONI, Mattia. Computational methodology for enhanced sensitivity analysis of gene regulatory networks. Ljubljana: [M. Petroni], 2018. XVI, 225 str., ilustr. http://eprints.fri.uni-lj.si/4129/. [COBISS.SI-ID 1537786307]

Mentor for Master's Theses (Bologna study programme)

177. ŠIRCELJ, Beno. Modeling of production processes with mathematical logic : master's thesis : the 2nd cycle master's study programme Computer and Information Science. Ljubljana: [B. Šircelj], 2021. XII, 39 str., ilustr. [COBISS.SI-ID 69237507]

178. KOMAC, Roman. Računalniško načrtovanje večceličnih sinhronskih procesnih struktur : magistrsko delo : magistrski študijski program druge stopnje Računalništvo in informatika. Ljubljana: [R. Komac], 2020. 82 str., ilustr. https://repozitorij.uni-lj.si/IzpisGradiva.php?id=122384&lang=slv. [COBISS.SI-ID 42006787]

179. VODOPIVEC, Nataša. Integration of standards and guidelines into the open source information management systems for biobanks : master of science in Informatics at Grenoble : specialization Artificial Intelligence and the Web. [S. l.: N. Vodopivec], 2019. IV, 54 str., ilustr. [COBISS.SI-ID 1538281923]

180. MAGDEVSKA, Lidija. Matematični model vpliva cirkadiane ure na biosintezo holesterola : magistrsko delo. Ljubljana: [L. Magdevska], 2019. VII, 87 str., ilustr. https://repozitorij.uni-lj.si/IzpisGradiva.php?id=109982. [COBISS.SI-ID 18717785]

181. PUŠNIK, Žiga. Analiza prostora dopustnih rešitev v visokodimenzionalnih dinamičnih modelih bioloških sistemov : magistrsko delo : magistrski program druge stopnje Računalništvo in informatika. Ljubljana: [Ž. Pušnik], 2018. VIII, 83 str., ilustr. http://eprints.fri.uni-lj.si/4220/. [COBISS.SI-ID 1537907395]

182. GAZVODA, Silvo. Pregled orodij za agentno modeliranje bioloških sistemov in njihova uporaba na modelu večceličnega biološkega oscilatorja : magistrsko delo : študijski program druge stopnje Računalništvo in informatika. Ljubljana: [S. Gazvoda], 2017. VIII, 85 str., ilustr. http://eprints.fri.uni-lj.si/3983/. [COBISS.SI-ID 1537592771]

Mentor for Undergraduate Theses (1st cycle Bologna study programme)

183. VELIKAJNE, Nina. Pregled in uporaba računskih metod za analizo ritmične pojavnosti dogodkov : diplomsko delo : univerzitetni študijski program prve stopnje Računalništvo in informatika. Ljubljana: [N. Velikajne], 2021. 45 str., ilustr. https://repozitorij.uni-lj.si/IzpisGradiva.php?id=124591&lang=slv. [COBISS.SI-ID 50587907]

184. VRANKAR, Matej. Razvoj aplikacije za izmenjavo sporočil na platformi Android : diplomsko delo : visokošolski strokovni študijski program prve stopnje Računalništvo in informatika. Ljubljana: [M. Vrankar], 2021. VIII, 38 str., ilustr. https://repozitorij.uni-lj.si/IzpisGradiva.php?id=124517&lang=slv. [COBISS.SI-ID 49218563]

185. MERHAR, Aleksander. Razvoj spletne aplikacije za analizo PCR podatkov : diplomsko delo : univerzitetni študijski program prve stopnje Računalništvo in informatika. Ljubljana: [A. Merhar], 2021. 54 str., ilustr. [COBISS.SI-ID 78909699]

186. NASTRAN, Jurij. Analiza uporabe hiperelipsoidov pri ocenjevanju robustnosti biološkega procesorja : diplomsko delo : univerzitetni študijski program prve stopnje Računalništvo in informatika. Ljubljana: [J. Nastran], 2020. 47 str., ilustr. https://repozitorij.uni-lj.si/IzpisGradiva.php?id=120063&lang=slv. [COBISS.SI-ID 31471363]

187. MIŠKIĆ, David. Pregled in primerjava računskih pristopov za analizo ritmičnega izražanja genov : diplomsko delo : univerzitetni študijski program prve stopnje Računalništvo in informatika. Ljubljana: [D. Miškić], 2020. 137 str., graf. prikazi. https://repozitorij.uni-lj.si/IzpisGradiva.php?id=114119&lang=slv. [COBISS.SI-ID 1538535619]

188. AJSTER, Matej. Spletna aplikacija za analizo in vizualizacijo cirkadianih podatkov s knjižnico CosinorPy : diplomsko delo : univerzitetni študijski program prve stopnje Računalništvo in informatika. Ljubljana: [M. Ajster], 2020. 44 str., ilustr. https://repozitorij.uni-lj.si/IzpisGradiva.php?id=120065&lang=slv. [COBISS.SI-ID 31681027]

189. PLOHL, Jaša. Spremljanje porabe preko spletnih orodij za vizualizacijo meritev : diplomsko delo : visokošolski strokovni študijski program prve stopnje Računalništvo in informatika. Ljubljana: [J. Plohl], 2020. 35 str., ilustr. https://repozitorij.uni-lj.si/IzpisGradiva.php?id=119303&lang=slv. [COBISS.SI-ID 28020995]

190. ŽNIDARŠIČ, Luka. Mobilna aplikacija za določanje lokacij z optimalnim vremenom : diplomsko delo : visokošolski strokovni študijski program prve stopnje Računalništvo in informatika. Ljubljana: [L. Žnidaršič], 2019. VIII, 29 str., ilustr. http://eprints.fri.uni-lj.si/4380/. [COBISS.SI-ID 1538154691]

191. BOLČIČ TAVČAR, Marko. Detekcija in preprečevanje napadov DDOS v okolju manjšega ponudnika internetnih storitev : diplomsko delo : univerzitetni študijski program prve stopnje Računalništvo in informatika. Ljubljana: [M. Bolčič Tavčar], 2018. VIII, 35 str., ilustr. http://eprints.fri.uni-lj.si/4049/. [COBISS.SI-ID 1537702851]

192. JUKAN, Nermin. Razvoj spletne platforme za vizualizacijo in deljenje medicinskih algoritmov : diplomsko delo : visokošolski strokovni študijski program prve stopnje Računalništvo in informatika. Ljubljana: [N. Jukan], 2018. 42 str., ilustr. http://eprints.fri.uni-lj.si/4181/. [COBISS.SI-ID 1537926339]

193. NADIŽAR, Nejc. Vzpostavitev informacijskega okolja za vodenje evidence bioloških vzorcev : diplomsko delo : univerzitetni študijski program prve stopnje Računalništvo in matematika. Ljubljana: [N. Nadižar], 2018. VIII, 41 str., ilustr. http://eprints.fri.uni-lj.si/4099/. [COBISS.SI-ID 1537763523]

194. MAGDEVSKA, Lidija. Uporaba mehke logike za modeliranje bioloških sistemov na primeru signalne poti MAPK : diplomsko delo : univerzitetni študijski program prve stopnje Računalništvo in matematika. Ljubljana: [L. Magdevska], 2017. IX, 61 str., ilustr. http://eprints.fri.uni-lj.si/3906/. [COBISS.SI-ID 1537530563]

195. STIPIČ, Matej. Razvoj modula za upravljanje delovnih obremenitev v sistemu AtlasWMS : diplomsko delo : visokošolski strokovni študijski program prve stopnje Računalništvo in informatika. Ljubljana: [M. Stipič], 2016. 39 str., ilustr. http://eprints.fri.uni-lj.si/3238/. [COBISS.SI-ID 1536770243]

196. OSOLIN, Timotej. Zasnova translacije bioloških modelov v SBML zapis : diplomsko delo : univerzitetni študijski program prve stopnje Računalništvo in informatika. Ljubljana: [T. Osolin], 2016. VIII, 36 str., ilustr. http://eprints.fri.uni-lj.si/3518/. [COBISS.SI-ID 1537197251]

197. GULJA, Matjaž. Analiza računalniškega omrežja na primeru Dijaškega doma Tabor : diplomsko delo. Ljubljana: [M. Gulja], 2014. 54 str., graf. prikazi. http://eprints.fri.uni-lj.si/2761/. [COBISS.SI-ID 1536041923]

198. JANŠA, Jure. Merjenje zmogljivosti in optimizacija navideznih naprav DataPower : diplomsko delo. Ljubljana: [J. Janša], 2014. 35 str., ilustr. http://eprints.fri.uni-lj.si/2762/. [COBISS.SI-ID 1536071875]

199. POLJANŠEK, Nejc. Vzpostavitev spletnega vmesnika za prikaz tenziomiografskih meritev : diplomsko delo. Ljubljana: [N. Poljanšek], 2014. 30 str., graf. prikazi. http://eprints.fri.uni-lj.si/2814/. [COBISS.SI-ID 1536038595]

Mentor for Undergraduate Theses

200. PUŠNIK, Žiga. Analiza prostora dopustnih rešitev v visokodimenzionalnih dinamičnih modelih bioloških sistemov : delo je pripravljeno v skladu s Pravilnikom o podeljevanju Prešernovih nagrad študentom, pod mentorstvom doc. dr. Mihe Moškona. Ljubljana: [Ž. Pušnik], 2018. VIII, 83 str., ilustr. http://eprints.fri.uni-lj.si/4328/. [COBISS.SI-ID 1538062019]
award: Fakultetna Prešernova nagrada

201. MAGDEVSKA, Lidija. Uporaba mehke logike za modeliranje bioloških sistemov na primeru signalne poti MAPK : delo je pripravljeno v skladu s Pravilnikom o podeljevanju Prešernovih nagrad študentom, pod mentorstvom doc. dr. Mihe Moškona. Ljubljana: [L. Magdevska], 2017. IX, 63 str., ilustr. http://eprints.fri.uni-lj.si/4023/. [COBISS.SI-ID 1537656259]
award: Fakultetna Prešernova nagrada

202. ILC, Tina, LEBAR, Tina, STOŠICKI, Tjaša, TOMŠIČ, Nejc, TURNŠEK, Jernej, ŽNIDARIČ, Matej, BORDON, Jure, ČEŠNOVAR, Rok, PETRONI, Mattia, PUSTOSLEMŠEK, Rok. Competition team members : DNA coding beyond triplets : [grand prize winners at the International Genetically Engineered Machine competition-iGEM project 2010, Cambridge, Massachussets Institute of Technolog, November 2010]. 2010. http://2010.igem.org/Team:Slovenia. [COBISS.SI-ID 4757018]

Co-Mentor for Doctoral Dissertations

203. CVITANOVIĆ TOMAŠ, Tanja. Analiza sistemskih motenj v metabolizmu jeter z modelom SteatoNet : doktorska disertacija = Analysis of system disorders in liver metabolism with the SteatoNet model : doctoral dissertation. Ljubljana: [T. Cvitanović Tomaš], 2018. XVII, 89 str., ilustr. https://repozitorij.uni-lj.si/IzpisGradiva.php?id=105555&lang=slv. [COBISS.SI-ID 298128128]

Co-Mentor for Master's Theses (Bologna study programme)

204. ARBAJTER, Simon. Analiza toka in načina hrambe podatkov o obravnavah pacientov v Urgentnem kirurškem bloku UKC Ljubljana : magistrsko delo = Analysis of patient data management process in the Surgical emergency unit of UMC Ljubljana : masterʹs thesis. Ljubljana: [S. Arbajter], 2017. 75 str., [1] f. pril., [2] f. zganj. pril., ilustr. https://repozitorij.uni-lj.si/IzpisGradiva.php?id=95307. [COBISS.SI-ID 5323371]

Co-Mentor for Undergraduate Theses (1st cycle Bologna study programme)

205. MUNDA, Sergej. Spletna aplikacija za samodejno izdelavo sedežnih redov : diplomsko delo : univerzitetni študijski program prve stopnje Računalništvo in informatika. Ljubljana: [S. Munda], 2021. 53 str., ilustr. [COBISS.SI-ID 78211587]

206. LEBEN, Urban. Programska rešitev avtomatizacije procesa sestave turističnega itinerarja : diplomsko delo : univerzitetni študijski program prve stopnje Računalništvo in informatika. Ljubljana: [U. Leben], 2017. 40 str., ilustr. http://eprints.fri.uni-lj.si/3868/. [COBISS.SI-ID 1537466307]

207. VODOPIVEC, Nataša. Prenos meritev pametne zapestnice v enovito podatkovno bazo : diplomsko delo : univerzitetni študijski program prve stopnje Računalništvo in informatika. Ljubljana: [N. Vodopivec], 2016. VIII, 38 str., ilustr. http://eprints.fri.uni-lj.si/3635/. [COBISS.SI-ID 1537244355]

208. GAZVODA, Silvo. Analiza delovanja računalniških omrežij s programskim orodjem CACTI : diplomsko delo. Ljubljana: [S. Gazvoda], 2014. 47 str., ilustr. http://eprints.fri.uni-lj.si/2750/. [COBISS.SI-ID 1536066243]

209. MENEGATTI, Ožbolt. Vzorčni primeri programskih rešitev za Raspberry Pi : diplomsko delo. Ljubljana: [O. Menegatti], 2014. 58 str., ilustr. http://eprints.fri.uni-lj.si/2751/. [COBISS.SI-ID 1536145603]

Co-Mentor for Undergraduate Theses

210. STRAŽAR, Martin. Odkrivanje znanja iz modela genskega regulatornega omrežja : delo je pripravljeno v skladu s Pravilnikom o podeljevanju Prešernovih nagrad študentom, pod mentorstvom prof. dr. Mihe Mraza in somentorstvom dr. Mihe Moškona. Ljubljana: [M. Stražar], 2013. IX, 77 str., ilustr. http://eprints.fri.uni-lj.si/3696/. [COBISS.SI-ID 10299476]

Consultant

211. LEBEN, Katja, KRESE, Rok, PLAPER, Tjaša, FRANKO, Nik, MAGDEVSKA, Lidija, GRADIŠEK, Miha, MERLJAK, Estera, ROŠKAR, Samo, JERALA, Nina, CEROVIĆ, Kosta, PRAZNIK, Arne, PUŠNIK, Žiga. IGEM 2016 : giant jamboree, October 27-31, Hynes Convention Center, Boston, MA. [COBISS.SI-ID 1537310915]